Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 3.3e-231 804.7 398 100.0
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 4.6e-177 624.8 359 85.5
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.4e-165 585.9 361 80.3
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 2.1e-161 572.8 359 78.0
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 6.3e-150 534.6 370 72.2
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 2.3e-144 516.2 357 71.1
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 2.2e-142 509.6 356 71.3
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 2.2e-142 509.6 354 72.3
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 8.8e-128 461.1 356 64.3
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.2e-126 456.4 356 64.0
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 1.6e-124 450.3 375 60.3
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 5.9e-124 448.4 261 84.7
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 4.2e-122 442.2 397 59.4
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 3.6e-121 439.1 373 61.9
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.3e-120 436.4 355 63.1
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 5.2e-120 435.3 372 59.7
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.2e-119 434.1 373 61.7
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 5.7e-119 431.8 376 59.6
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.8e-118 429.5 375 60.5
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 1.8e-117 426.8 371 59.3
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 5.9e-116 421.8 369 61.0
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.3e-115 419.9 356 59.8
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 3.8e-115 419.1 375 58.4
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.6e-115 417.9 355 62.0
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.5e-114 417.2 378 57.4
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.9e-114 416.8 261 79.7
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 7.2e-114 414.8 356 59.6
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 9.5e-114 414.5 356 59.6
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.1e-113 413.3 356 61.5
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 4.7e-113 412.1 379 58.6
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 2.3e-112 409.8 374 57.5
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 3.0e-112 409.5 227 88.1
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 9.8e-111 404.4 374 57.2
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 1.3e-110 404.1 369 57.7
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.3e-110 404.1 372 58.3
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 2.2e-110 403.3 359 59.3
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 2.2e-110 403.3 376 56.1
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.8e-109 400.2 341 62.2
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.6e-108 397.1 376 54.3
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 3.5e-108 396.0 357 58.3
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 4.5e-108 395.6 391 55.5
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 5.9e-108 395.2 358 58.7
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 1.0e-107 394.4 253 78.3
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 8.6e-107 391.3 332 59.9
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 8.6e-107 391.3 391 54.0
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.5e-106 390.6 372 55.1
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 2.5e-106 389.8 366 56.0
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 4.3e-106 389.0 366 57.7
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.6e-105 387.1 376 54.0
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.6e-105 387.1 369 56.6
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 4.7e-105 385.6 376 54.3
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 4.7e-105 385.6 381 53.8
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 1.0e-104 384.4 381 53.3
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.4e-104 384.0 373 53.9
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.8e-104 383.6 375 54.1
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 8.9e-104 381.3 369 54.7
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 2.0e-103 380.2 379 54.6
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 3.4e-103 379.4 373 53.6
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 3.4e-103 379.4 408 51.7
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 4.4e-103 379.0 373 52.8
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 5.8e-103 378.6 370 54.3
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 2.9e-102 376.3 420 50.0
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 8.3e-102 374.8 373 52.3
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.1e-101 374.4 392 51.3
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-100 370.9 374 53.5
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.6e-100 370.5 343 57.7
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 2.0e-100 370.2 370 53.8
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.7e-100 369.8 380 54.5
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.5e-100 369.4 374 53.2
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 6.0e-100 368.6 374 54.3
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.0e-99 367.9 405 50.9
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.0e-99 367.9 374 53.5
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 1.3e-99 367.5 370 54.3
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 3.0e-99 366.3 374 53.5
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.6e-97 360.5 313 59.1
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 2.8e-97 359.8 370 53.5
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 8.1e-97 358.2 383 52.2
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.3e-96 356.7 311 59.5
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.2e-95 354.4 297 60.9
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.5e-95 354.0 380 50.3
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 4.4e-95 352.4 316 59.5
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 5.8e-95 352.1 378 50.3
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 7.5e-95 351.7 397 51.1
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 9.8e-95 351.3 398 50.0
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.4e-93 347.4 363 52.1
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 6.0e-92 342.0 352 53.1
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.3e-91 340.9 368 51.1
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.7e-91 340.5 346 54.3
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.3e-91 340.1 261 69.7
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.3e-90 335.9 356 53.4
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 3.6e-89 332.8 295 59.3
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.0e-87 327.0 312 57.7
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 6.6e-83 312.0 311 54.3
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 8.6e-83 311.6 338 51.5
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 7.3e-82 308.5 358 48.6
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.5e-79 300.8 329 49.5
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.3e-78 297.7 355 47.6
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 2.3e-75 287.0 283 54.4
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 3.0e-75 286.6 362 44.8
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 4.3e-66 256.1 471 35.2
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.8e-64 250.8 307 46.3
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 9.0e-64 248.4 261 51.3
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.5e-63 247.7 225 58.2
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 2.9e-62 243.4 322 46.9
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 5.5e-61 239.2 476 35.3
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.3e-59 234.6 182 62.6
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.1e-58 231.5 190 60.0
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 4.3e-58 229.6 289 47.4
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.1e-57 225.3 228 56.1
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 8.1e-57 225.3 133 84.2
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.2e-55 221.5 352 41.8
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 4.8e-49 199.5 254 44.5
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 3.1e-48 196.8 203 53.2
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 6.9e-48 195.7 193 56.5
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 1.8e-43 181.0 192 52.6
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 2.5e-42 177.2 192 51.0
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 2.5e-42 177.2 295 41.0
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.5e-42 177.2 194 49.0
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 1.4e-37 161.4 365 35.9
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 3.3e-34 150.2 145 57.2
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 3.7e-33 146.7 127 56.7
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.1e-32 145.2 95 74.7
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.4e-29 134.8 377 30.0
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 4.2e-29 133.3 111 56.8
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 7.2e-29 132.5 420 28.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 7.9e-28 129.0 108 56.5
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 2.8e-25 120.6 140 49.3
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.5e-21 107.5 103 50.5
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 4.7e-20 103.2 131 45.0
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 8.8e-19 99.0 350 26.9
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 6.3e-17 92.8 236 29.7
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.1e-16 90.1 105 50.5
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 7.2e-13 79.3 44 84.1
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.6e-12 78.2 295 27.5
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 1.5e-10 71.6 62 54.8
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.0e-10 71.2 251 27.1
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 2.2e-09 67.8 65 55.4
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 6.3e-09 66.2 66 54.5
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 8.3e-09 65.9 49 61.2
Cfa026016 Carpinus fangiana HOM05D000280 ORTHO05D000632 5.4e-08 63.2 138 34.1
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 5.9e-07 59.7 41 70.7


User provided reference genes

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