Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 0.0e+00 1335.9 664 100.0
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.6e-275 952.6 720 70.6
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 3.3e-268 928.3 715 69.5
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 6.4e-240 834.3 713 64.1
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 3.3e-236 822.0 716 63.0
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 1.2e-222 776.9 713 60.2
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 5.4e-215 751.5 712 58.8
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 5.4e-215 751.5 711 57.9
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 3.7e-211 738.8 718 56.4
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 4.6e-206 721.8 721 56.4
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 8.7e-205 717.6 720 54.3
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 2.5e-204 716.1 718 56.3
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 1.2e-201 707.2 722 55.4
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.2e-200 703.0 713 53.7
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 4.2e-199 698.7 711 54.6
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 3.0e-197 692.6 758 51.5
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 5.1e-197 691.8 715 53.8
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.1e-196 690.6 715 53.7
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.5e-196 689.5 714 53.9
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.2e-195 686.4 713 53.2
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 3.7e-195 685.6 711 53.6
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.8e-195 685.3 712 53.5
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 1.1e-194 684.1 706 54.2
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 7.7e-193 677.9 711 54.6
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.3e-192 677.2 718 53.3
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.3e-192 677.2 727 52.1
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.7e-192 676.8 707 53.5
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.9e-191 673.3 714 52.7
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.5e-191 672.9 713 52.3
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.6e-190 668.7 721 51.0
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 1.8e-189 666.8 715 52.6
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 3.0e-189 666.0 712 51.4
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 8.8e-189 664.5 713 51.8
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 7.4e-188 661.4 708 52.8
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 6.3e-187 658.3 726 51.9
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 6.3e-187 658.3 715 51.5
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.1e-186 657.5 713 51.6
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 2.4e-186 656.4 713 51.5
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 2.4e-186 656.4 712 52.4
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 6.9e-186 654.8 702 51.6
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 3.4e-185 652.5 711 53.0
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-184 650.6 690 52.2
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 2.9e-184 649.4 730 50.1
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 6.5e-184 648.3 728 50.4
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 8.5e-184 647.9 722 50.0
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 5.5e-183 645.2 714 50.3
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.8e-181 640.2 721 52.8
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 2.3e-181 639.8 722 50.7
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 5.1e-181 638.6 726 50.3
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 6.7e-181 638.3 715 50.3
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 6.7e-181 638.3 717 50.3
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 8.8e-181 637.9 710 51.4
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 8.8e-181 637.9 713 49.8
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.5e-180 637.1 715 49.8
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.0e-180 636.7 712 50.8
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 3.3e-180 636.0 699 51.5
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 4.4e-180 635.6 714 50.0
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.2e-179 633.3 732 50.0
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 6.3e-179 631.7 713 49.8
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 1.4e-178 630.6 720 49.7
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 3.1e-178 629.4 722 51.1
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 4.1e-178 629.0 725 49.9
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.1e-178 629.0 725 49.9
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.3e-178 628.6 725 49.9
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.6e-177 626.3 706 50.1
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 3.5e-177 625.9 713 49.1
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.5e-177 625.5 720 49.9
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 5.0e-176 622.1 724 50.8
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 8.5e-176 621.3 712 50.6
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.5e-175 620.5 713 48.8
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 1.2e-174 617.5 704 48.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.7e-174 616.3 725 50.2
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 6.1e-174 615.1 724 49.9
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 8.0e-174 614.8 718 48.5
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 8.0e-174 614.8 713 48.5
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 3.0e-173 612.8 750 47.1
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.5e-172 610.5 716 49.0
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 3.3e-172 609.4 714 48.0
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 3.7e-171 605.9 727 49.5
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 4.8e-171 605.5 700 49.0
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 6.3e-171 605.1 705 49.2
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 8.2e-171 604.7 707 48.7
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.4e-170 604.0 704 48.4
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.8e-170 603.6 725 48.8
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.8e-170 603.6 725 48.4
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 3.1e-170 602.8 706 48.7
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 7.0e-170 601.7 741 47.8
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 7.0e-170 601.7 704 48.6
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.6e-169 600.5 728 47.3
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.5e-169 599.4 701 48.2
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.5e-169 599.0 719 47.6
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 5.9e-169 598.6 714 47.8
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.0e-168 597.8 706 48.3
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.3e-168 597.4 716 47.3
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.3e-168 597.4 712 48.2
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.3e-168 597.4 664 52.4
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.7e-168 597.0 706 48.3
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.8e-168 595.9 727 49.2
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 6.5e-168 595.1 702 48.4
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 6.5e-168 595.1 704 48.4
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 8.5e-168 594.7 706 48.3
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-167 594.3 704 48.0
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.5e-167 593.2 727 49.0
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 5.5e-167 592.0 763 45.9
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 5.5e-167 592.0 704 48.4
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 7.2e-167 591.7 712 47.2
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 9.4e-167 591.3 713 46.8
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 4.7e-166 589.0 728 46.4
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 6.1e-166 588.6 704 48.2
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 8.0e-166 588.2 695 48.6
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.8e-165 587.0 706 48.0
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.8e-165 587.0 716 46.6
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.8e-165 587.0 716 46.6
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 2.3e-165 586.6 705 48.2
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.0e-165 586.3 667 51.1
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 3.0e-165 586.3 775 45.9
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 5.2e-165 585.5 712 46.5
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.8e-165 585.1 759 45.5
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.2e-164 584.3 712 46.5
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.5e-164 583.9 746 46.5
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.0e-164 583.6 705 47.9
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.0e-164 583.6 746 46.4
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 4.4e-164 582.4 705 47.5
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 7.5e-164 581.6 709 47.8
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.7e-163 580.5 746 46.2
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.2e-163 580.1 705 47.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 8.3e-163 578.2 716 46.1
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.4e-162 577.4 755 46.9
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.4e-162 577.4 652 50.6
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.0e-161 573.5 697 48.1
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 4.5e-161 572.4 718 46.4
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 7.2e-159 565.1 704 46.4
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.2e-156 557.8 622 50.6
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 1.6e-153 547.4 705 45.4
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.0e-152 544.7 724 45.9
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.9e-151 540.4 671 46.9
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 2.5e-151 540.0 726 44.6
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 7.5e-148 528.5 721 45.1
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 6.4e-147 525.4 711 44.7
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 3.2e-146 523.1 712 43.8
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.5e-143 514.2 732 42.9
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 6.2e-142 508.8 691 43.4
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.7e-137 493.4 527 52.2
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 6.2e-126 455.7 527 51.2
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.9e-104 383.3 401 52.9
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.5e-103 380.6 444 49.3
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 2.1e-102 377.5 774 33.5
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 4.9e-99 366.3 792 33.5
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 1.5e-95 354.8 726 34.0
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.6e-94 351.3 313 58.1
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.5e-90 337.4 450 44.2
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.8e-86 323.9 472 41.5
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 7.6e-84 315.8 288 57.3
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 3.9e-80 303.5 796 30.8
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.6e-73 281.6 307 49.8
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 2.3e-72 277.7 261 55.6
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 3.8e-59 233.8 324 45.1
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 6.8e-48 196.4 155 64.5
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 5.7e-47 193.4 375 35.2
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 1.7e-43 181.8 262 46.2
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 1.7e-38 165.2 175 53.1
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.2e-36 159.1 143 58.0
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.8e-35 154.1 117 68.4
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 5.0e-35 153.7 436 27.3
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.0e-32 146.0 273 34.8
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.4e-32 145.6 197 43.1
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 5.2e-32 143.7 148 51.4
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 7.5e-31 139.8 197 42.1
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.7e-30 138.7 106 60.4
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 2.2e-30 138.3 530 25.3
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 6.4e-30 136.7 417 29.3
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.7e-28 131.3 435 25.1
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 5.9e-28 130.2 95 63.2
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 2.3e-27 128.3 112 58.0
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.5e-26 124.8 87 66.7
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.9e-19 100.9 80 61.2
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 5.6e-18 97.1 103 53.4
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 9.9e-15 86.3 79 57.0
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 6.8e-08 63.5 107 36.4
AagrBONN_evm.TU.Sc2ySwM_344.667 Anthoceros agrestis HOM05D021458 ORTHO05D023500 1.3e-06 59.3 130 28.5
Aa31LG1G13720 Aethionema arabicum HOM05D006479 ORTHO05D008310 1.7e-06 58.9 133 28.6
HPP92_021206 Vanilla planifolia HOM05D006479 ORTHO05D008310 2.2e-06 58.5 147 27.9


User provided reference genes

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