Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 5.7e-289 996.9 506 100.0
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.3e-221 772.3 444 91.2
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 2.2e-163 579.7 359 84.4
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 2.8e-163 579.3 358 84.9
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 4.1e-154 548.9 358 81.3
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 7.0e-154 548.1 358 81.3
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.0e-152 544.3 358 79.9
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 2.2e-152 543.1 358 79.6
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 2.9e-152 542.7 358 81.0
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.5e-151 539.7 358 77.7
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.6e-150 537.0 359 79.4
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 6.1e-150 535.0 358 79.6
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 4.0e-149 532.3 359 78.0
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 3.1e-146 522.7 358 75.7
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 5.0e-128 462.2 358 71.8
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 2.6e-124 449.9 369 64.5
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.0e-121 440.3 359 64.9
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.0e-121 440.3 365 65.5
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 4.6e-121 439.1 358 65.1
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 6.0e-121 438.7 365 65.2
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 7.8e-121 438.3 361 64.3
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 8.6e-120 434.9 359 63.5
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 8.6e-120 434.9 358 64.8
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.9e-119 433.7 358 64.2
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 4.3e-119 432.6 358 63.7
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 4.3e-119 432.6 358 64.2
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 1.6e-118 430.6 359 64.3
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.6e-118 430.6 361 64.0
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 2.8e-118 429.9 358 64.2
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.8e-118 429.9 356 63.2
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 6.2e-118 428.7 358 63.4
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 6.8e-117 425.2 359 63.5
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 8.9e-117 424.9 358 62.8
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 2.6e-116 423.3 357 63.0
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 3.4e-116 422.9 358 64.0
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 4.4e-116 422.5 358 62.3
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 7.5e-116 421.8 357 62.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.3e-115 421.0 358 62.3
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 2.2e-115 420.2 358 61.2
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 2.9e-115 419.9 363 61.4
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 3.7e-115 419.5 361 62.9
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 3.7e-115 419.5 356 61.5
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 8.3e-115 418.3 358 62.3
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.1e-114 417.9 363 61.2
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.9e-114 417.2 363 62.3
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 7.1e-114 415.2 356 61.2
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.6e-113 414.1 359 62.4
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.1e-113 413.7 358 61.7
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 1.0e-112 411.4 358 62.3
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.0e-112 411.4 359 62.4
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.3e-112 411.0 358 62.0
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.3e-112 411.0 362 60.8
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.3e-112 411.0 369 58.3
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 2.3e-112 410.2 358 62.0
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 6.6e-112 408.7 358 61.5
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 8.6e-112 408.3 358 60.1
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.1e-111 407.9 358 60.1
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.5e-111 407.5 359 61.3
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 5.6e-111 405.6 374 58.3
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 5.6e-111 405.6 358 59.5
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 9.5e-111 404.8 358 60.6
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 9.5e-111 404.8 366 61.7
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 9.5e-111 404.8 358 60.9
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.1e-110 403.7 356 61.5
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.1e-110 403.7 356 61.5
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 3.6e-110 402.9 358 60.1
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 6.2e-110 402.1 374 60.4
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.1e-109 401.4 358 60.3
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.8e-109 400.6 358 59.2
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 2.3e-109 400.2 358 59.5
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 5.2e-109 399.1 358 60.1
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 5.2e-109 399.1 358 60.1
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.9e-109 398.3 356 60.1
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.2e-108 397.9 358 58.9
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 1.2e-108 397.9 358 59.2
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.2e-108 397.9 356 61.0
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.2e-108 397.9 358 60.1
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.5e-108 397.5 356 60.4
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 1.5e-108 397.5 356 60.1
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.5e-108 397.5 356 60.1
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.5e-108 397.5 378 58.7
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 1.5e-108 397.5 358 60.3
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.5e-108 397.5 356 60.7
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 2.0e-108 397.1 372 58.1
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 2.0e-108 397.1 358 58.9
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 3.4e-108 396.4 358 58.9
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 5.8e-108 395.6 358 58.4
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 9.9e-108 394.8 358 58.1
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 2.2e-107 393.7 358 58.7
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.2e-107 393.7 356 59.6
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 3.7e-107 392.9 359 59.1
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 6.4e-107 392.1 362 60.2
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 8.4e-107 391.7 356 59.8
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.1e-106 391.3 358 58.1
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.4e-106 391.0 362 60.5
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 4.1e-106 389.4 362 59.7
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 5.4e-106 389.0 359 58.5
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 7.1e-106 388.7 362 59.9
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 7.1e-106 388.7 358 58.1
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.1e-105 387.1 356 58.7
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 2.1e-105 387.1 358 58.1
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 2.7e-105 386.7 358 58.4
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 6.0e-105 385.6 350 60.9
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 7.8e-105 385.2 358 60.1
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.0e-104 384.8 358 57.3
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 8.6e-104 381.7 359 59.1
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 8.1e-102 375.2 362 57.5
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 3.8e-99 366.3 339 58.1
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 8.4e-99 365.2 362 58.0
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 3.2e-98 363.2 339 57.5
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 2.5e-95 353.6 362 55.5
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 4.8e-94 349.4 349 57.0
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 3.4e-92 343.2 358 55.9
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.7e-91 340.9 360 53.6
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.7e-91 340.9 295 62.7
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 2.9e-91 340.1 374 52.9
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 4.9e-91 339.3 321 58.6
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 8.4e-91 338.6 353 53.5
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 5.6e-87 325.9 358 51.7
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.6e-86 324.3 358 53.4
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 9.0e-85 318.5 358 51.1
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.6e-84 317.0 344 52.9
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.5e-82 309.3 344 51.2
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 2.1e-81 307.4 366 47.3
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 7.9e-81 305.4 278 61.2
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.3e-80 304.7 224 74.1
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 2.3e-80 303.9 345 50.7
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 4.5e-76 289.7 254 59.8
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.3e-75 288.1 356 47.5
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 1.9e-71 274.2 356 45.2
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.1e-69 268.5 183 82.0
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 1.2e-68 265.0 270 58.9
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 3.4e-68 263.5 256 53.5
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 1.0e-64 251.9 349 44.4
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.6e-62 244.6 222 56.3
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.1e-61 241.9 260 52.3
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 5.7e-55 219.5 183 64.5
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 5.0e-51 206.5 161 63.4
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 1.8e-45 188.0 367 36.0
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.9e-42 177.9 169 58.6
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 1.2e-41 175.3 355 33.8
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 8.8e-40 169.1 167 62.3
Ca_15743_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.6e-39 167.5 83 97.6
Ca_02925_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.2e-38 164.5 83 95.2
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.1e-29 134.0 118 60.2
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 7.7e-28 129.4 136 55.1
Ca_09718_v3 Cicer arietinum L. HOM05D000334 ORTHO05D000200 1.1e-26 125.6 69 87.0
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 2.1e-25 121.3 120 53.3
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 8.8e-24 115.9 78 71.8
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.6e-23 114.4 113 55.8
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.4e-23 114.0 113 55.8
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 2.0e-20 104.8 82 63.4
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 1.3e-19 102.1 193 39.4
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.7e-19 101.7 56 85.7
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 2.6e-15 87.8 98 55.1
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 5.7e-15 86.7 114 46.5
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.2e-12 79.0 106 50.9
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 1.7e-11 75.1 296 28.0
Medtr1g070970 Medicago truncatula HOM05D000334 ORTHO05D000200 2.3e-11 74.7 73 60.3
TPR.G39111 Trifolium pratense HOM05D000334 ORTHO05D000200 3.0e-11 74.3 74 62.2
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 2.8e-09 67.8 65 56.9
Phvul.007G176100 Phaseolus vulgaris HOM05D000334 ORTHO05D000200 2.8e-09 67.8 75 49.3
VMungo0720G1624 Vigna mungo HOM05D000334 ORTHO05D000200 4.7e-09 67.0 67 55.2
Lj5g0011798 Lotus japonicus HOM05D000334 ORTHO05D000200 1.2e-07 62.4 69 53.6
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 1.5e-07 62.0 46 65.2
Glyma.02G143100 Glycine max HOM05D000334 ORTHO05D000200 3.4e-07 60.8 78 50.0
Psat3g060800 Pisum sativum HOM05D000334 ORTHO05D000200 3.4e-07 60.8 83 47.0
Ca_15744_v3 Cicer arietinum L. HOM05D001252 ORTHO05D148191 4.4e-07 60.5 32 90.6
Glyma.10G031300 Glycine max HOM05D000334 ORTHO05D000200 5.8e-07 60.1 70 48.6
Medtr7g095960 Medicago truncatula HOM05D000334 ORTHO05D000200 5.8e-07 60.1 81 48.1
Psat6g058080 Pisum sativum HOM05D000334 ORTHO05D000200 9.8e-07 59.3 72 48.6
Lalb_Chr06g0162711 Lupinus albus HOM05D000334 ORTHO05D000200 1.3e-06 58.9 73 47.9
TPR.G19107 Trifolium pratense HOM05D000334 ORTHO05D000200 2.9e-06 57.8 84 45.2
Ca_08639_v3 Cicer arietinum L. HOM05D000334 ORTHO05D000200 6.4e-06 56.6 79 43.0


User provided reference genes

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