Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_22508_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 2.2e-227 792.0 400 100.0
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 2.1e-201 705.7 390 90.5
Lj4g0011234 Lotus japonicus HOM05D003438 ORTHO05D004235 1.3e-184 649.8 388 83.0
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 1.0e-179 633.6 390 80.5
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 2.1e-177 625.9 389 82.5
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 1.3e-174 616.7 390 77.4
arahy.Tifrunner.gnm1.ann1.KJ79M0 Arachis hypogaea HOM05D003438 ORTHO05D004235 9.0e-173 610.5 390 76.9
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 2.6e-172 609.0 389 76.6
arahy.Tifrunner.gnm1.ann1.2XHE7W Arachis hypogaea HOM05D003438 ORTHO05D004235 4.5e-172 608.2 390 76.7
Cfa008813 Carpinus fangiana HOM05D003438 ORTHO05D004235 4.7e-145 518.5 390 64.6
QL03p047145 Quercus lobata HOM05D003438 ORTHO05D004235 8.0e-145 517.7 390 63.8
Haze_11830 Corylus avellana HOM05D003438 ORTHO05D004235 1.4e-144 516.9 390 64.6
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 3.7e-142 508.8 393 63.1
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 1.4e-141 506.9 392 64.0
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 2.7e-140 502.7 399 61.7
GSVIVG01010139001 Vitis vinifera HOM05D003438 ORTHO05D004235 4.5e-140 501.9 392 64.5
CsaV3_5G033620 Cucumis sativus L. HOM05D003438 ORTHO05D004235 5.9e-140 501.5 399 61.9
ClCG05G023390 Citrullus lanatus HOM05D003438 ORTHO05D004235 1.3e-139 500.4 395 61.5
Atru.chr11.1518 Acer truncatum HOM05D003438 ORTHO05D004235 4.7e-137 491.9 392 62.8
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 4.0e-136 488.8 392 61.2
Ciclev10030492m.g Citrus clementina HOM05D003438 ORTHO05D004235 3.4e-135 485.7 393 61.6
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 4.4e-135 485.3 390 61.8
Hma1.2p1_0762F.1_g214450 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 4.4e-135 485.3 390 61.8
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 1.3e-134 483.8 392 61.2
MD16G1052600 Malus domestica HOM05D003438 ORTHO05D004235 2.2e-134 483.0 392 61.0
Prupe.1G298000 Prunus persica HOM05D003438 ORTHO05D004235 4.9e-134 481.9 390 60.5
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 1.1e-133 480.7 389 63.0
Manes.14G092500 Manihot esculenta HOM05D003438 ORTHO05D004235 7.0e-133 478.0 390 61.8
vmacro10455 Vaccinium macrocarpon HOM05D003438 ORTHO05D004235 7.0e-133 478.0 390 61.5
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 9.2e-133 477.6 392 60.7
Sabra10G0104100 Salix brachista HOM05D003438 ORTHO05D004235 1.2e-132 477.2 389 62.7
FvH4_4g28800 Fragaria vesca HOM05D003438 ORTHO05D004235 2.0e-132 476.5 390 60.3
RcHm_v2.0_Chr4g0436941 Rosa chinensis HOM05D003438 ORTHO05D004235 5.9e-132 474.9 390 60.8
FAN17G0827 Fragaria x ananassa HOM05D003438 ORTHO05D004235 1.3e-131 473.8 398 59.0
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 3.8e-131 472.2 398 58.8
Gohir.A03G107400 Gossypium hirsutum HOM05D003438 ORTHO05D004235 1.9e-130 469.9 396 60.1
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 2.5e-130 469.5 396 60.1
FAN12G2600 Fragaria x ananassa HOM05D003438 ORTHO05D004235 9.5e-130 467.6 398 58.8
MBI14_g11750_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D004235 1.4e-128 463.8 393 58.3
Hund25139 Selenicereus undatus HOM05D003438 ORTHO05D004235 6.8e-128 461.5 393 58.0
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 1.2e-127 460.7 392 58.4
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 6.4e-126 454.9 390 59.5
DCAR_023734 Daucus carota HOM05D003438 ORTHO05D004235 1.8e-125 453.4 392 58.7
Eucgr.G02402 Eucalyptus grandis HOM05D003438 ORTHO05D004235 1.8e-125 453.4 392 55.9
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 3.2e-125 452.6 394 56.6
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 2.7e-124 449.5 392 58.4
PGR119G1138 Punica granatum HOM05D003438 ORTHO05D004235 4.6e-124 448.7 390 56.9
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 7.8e-124 448.0 390 56.7
AUR62007840 Chenopodium quinoa HOM05D003438 ORTHO05D004235 1.7e-123 446.8 391 57.3
A02p15460 Brassica napus HOM05D003438 ORTHO05D004235 6.6e-123 444.9 391 56.8
BraA02t06607Z Brassica rapa HOM05D003438 ORTHO05D004235 6.6e-123 444.9 391 56.8
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 6.6e-123 444.9 394 56.6
Nn4g23588 Nelumbo nucifera HOM05D003438 ORTHO05D004235 1.5e-122 443.7 392 57.1
HanXRQChr16g0528311 Helianthus annuus HOM05D003438 ORTHO05D004235 3.3e-122 442.6 391 56.5
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 3.3e-122 442.6 394 56.6
AT1G68890 Arabidopsis thaliana HOM05D003438 ORTHO05D004235 3.6e-121 439.1 391 56.3
BolC2t08622H Brassica oleracea HOM05D003438 ORTHO05D004235 3.6e-121 439.1 391 55.5
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 3.6e-121 439.1 389 56.0
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 8.0e-121 438.0 375 60.3
CAN.G263.2 Capsicum annuum HOM05D003438 ORTHO05D004235 1.0e-120 437.6 390 56.2
Sopen04g001190 Solanum pennellii HOM05D003438 ORTHO05D004235 1.0e-120 437.6 390 56.7
Sp5g24020 Schrenkiella parvula HOM05D003438 ORTHO05D004235 3.1e-120 436.0 391 54.7
C02p25570 Brassica napus HOM05D003438 ORTHO05D004235 5.2e-120 435.3 392 55.4
Carub.0002s1552 Capsella rubella HOM05D003438 ORTHO05D004235 8.9e-120 434.5 390 55.6
Thhalv10017999m.g Eutrema salsugineum HOM05D003438 ORTHO05D004235 2.6e-119 433.0 400 54.8
Nitab4.5_0000591g0100 Nicotiana tabacum HOM05D003438 ORTHO05D004235 2.6e-119 433.0 390 55.1
Sc04g0007220 Simmondsia chinensis HOM05D003438 ORTHO05D004235 7.5e-119 431.4 390 55.6
Cc11_g11330 Coffea canephora HOM05D003438 ORTHO05D004235 2.9e-118 429.5 390 55.6
Aa31sc12G150 Aethionema arabicum HOM05D003438 ORTHO05D004235 6.4e-118 428.3 393 53.9
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 8.3e-118 427.9 392 54.1
CARHR061750 Cardamine hirsuta HOM05D003438 ORTHO05D004235 8.3e-118 427.9 390 55.6
EL10Ac6g14628 Beta vulgaris HOM05D003438 ORTHO05D004235 1.9e-117 426.8 392 56.1
Psat7g028040 Pisum sativum HOM05D003438 ORTHO05D004235 1.9e-117 426.8 269 79.6
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 7.0e-117 424.9 393 55.7
Nitab4.5_0000149g0230 Nicotiana tabacum HOM05D003438 ORTHO05D004235 1.6e-116 423.7 391 55.2
THA.LOC104821983 Tarenaya hassleriana HOM05D003438 ORTHO05D004235 2.3e-115 419.9 394 54.6
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 3.9e-115 419.1 390 53.8
Ah.12g061010 Amaranthus hybridus HOM05D003438 ORTHO05D004235 1.5e-114 417.2 392 54.6
CDE02G1987 Ceratophyllum demersum HOM05D003438 ORTHO05D004235 2.5e-114 416.4 392 53.6
ECA234G3211 Erigeron canadensis HOM05D003438 ORTHO05D004235 4.3e-114 415.6 390 53.3
Lsat_1_v5_gn_4_21341 Lactuca sativa HOM05D003438 ORTHO05D004235 1.2e-113 414.1 390 52.8
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 6.8e-112 408.3 421 50.1
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 1.7e-110 403.7 392 50.8
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 4.1e-109 399.1 389 51.4
CSS0014289 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 2.1e-108 396.7 339 61.4
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 3.3e-106 389.4 394 52.5
Rhsim13G0143500 Rhododendron simsii HOM05D003438 ORTHO05D004235 2.9e-102 376.3 383 52.2
Oeu027415.2 Olea europaea HOM05D003438 ORTHO05D004235 6.4e-102 375.2 388 49.7
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 1.7e-99 367.1 388 48.7
AUR62003034 Chenopodium quinoa HOM05D003438 ORTHO05D004235 1.5e-98 364.0 342 55.3
Actinidia07752 Actinidia chinensis HOM05D003438 ORTHO05D004235 7.3e-98 361.7 341 56.3
Zm00001eb245370 Zea mays HOM05D003438 ORTHO05D004235 7.6e-95 351.7 388 45.4
HPP92_019404 Vanilla planifolia HOM05D003438 ORTHO05D004235 5.6e-90 335.5 354 49.4
SEGI_33974 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 8.4e-86 321.6 394 42.1
SEGI_27375 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 4.2e-77 292.7 376 41.0
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 3.0e-75 286.6 410 41.7
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 1.0e-70 271.6 415 41.0
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.1e-69 268.1 403 38.2
Psat2g052840 Pisum sativum HOM05D003438 ORTHO05D004235 3.2e-69 266.5 152 86.8
Gohir.D02G132466 Gossypium hirsutum HOM05D003438 ORTHO05D004235 1.1e-64 251.5 392 39.0
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 7.6e-63 245.4 401 39.7
Actinidia30182 Actinidia chinensis HOM05D003438 ORTHO05D004235 1.7e-62 244.2 198 63.6
Psat2g033000 Pisum sativum HOM05D003438 ORTHO05D004235 5.0e-62 242.7 148 81.1
PGSC0003DMG400001917 Solanum tuberosum HOM05D003438 ORTHO05D004235 8.7e-59 231.9 186 62.4
Peaxi162Scf00396g01316 Petunia axillaris HOM05D003438 ORTHO05D004235 6.9e-56 222.2 187 56.7
Peaxi162Scf00396g01321 Petunia axillaris HOM05D003438 ORTHO05D004235 3.4e-55 219.9 199 54.8
Cpa.g.sc53.1 Carica papaya HOM05D003438 ORTHO05D004235 4.5e-55 219.5 169 65.1
Solyc04g005190.2 Solanum lycopersicum HOM05D003438 ORTHO05D004235 2.2e-54 217.2 212 50.9
Solyc04g005200.4 Solanum lycopersicum HOM05D003438 ORTHO05D004235 1.8e-48 197.6 167 60.5
Os02g0581500 Oryza sativa ssp. japonica HOM05D003438 ORTHO05D004235 7.2e-45 185.7 192 46.9
Psat4g082840 Pisum sativum HOM05D003438 ORTHO05D004235 1.1e-42 178.3 104 87.5
Psat0s4200g0080 Pisum sativum HOM05D002807 ORTHO05D004235 1.1e-40 171.8 110 80.9
Psat0s5438g0040 Pisum sativum HOM05D003438 ORTHO05D014892 4.5e-39 166.4 104 81.7
Psat7g103520 Pisum sativum HOM05D003438 ORTHO05D014892 4.5e-39 166.4 104 81.7
Psat6g122800 Pisum sativum HOM05D002960 ORTHO05D014892 2.8e-33 147.1 93 82.8
Gohir.A13G089245 Gossypium hirsutum HOM05D003438 ORTHO05D004235 2.0e-31 141.0 97 67.0
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 5.5e-29 132.9 378 30.4
Psat2g135600 Pisum sativum HOM05D003438 ORTHO05D004235 7.2e-29 132.5 84 81.0
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 2.7e-28 130.6 77 81.8
CBR_g48056 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-28 129.8 528 24.6
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 6.1e-28 129.4 475 26.9
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 5.7e-26 122.9 83 78.3
Psat1g137120 Pisum sativum HOM05D003438 ORTHO05D014892 5.7e-26 122.9 83 78.3
Nitab4.5_0002491g0050 Nicotiana tabacum HOM05D003438 ORTHO05D004235 3.5e-23 113.6 127 52.0
MD13G1054300 Malus domestica HOM05D003438 ORTHO05D004235 2.2e-22 110.9 92 65.2
Cfa008818 Carpinus fangiana HOM05D003438 ORTHO05D004235 1.9e-21 107.8 103 47.6
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 2.3e-19 100.9 485 25.2
CSS0002113 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 2.3e-14 84.3 49 77.6
Psat7g028200 Pisum sativum HOM05D001083 ORTHO05D004235 2.5e-13 80.9 46 80.4
MBI04_g26975_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D014892 6.8e-11 72.8 48 68.8
Psat2g052880 Pisum sativum HOM05D003438 ORTHO05D004235 7.5e-10 69.3 40 80.0
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 8.6e-06 55.8 122 32.8


User provided reference genes

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