Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 6.3e-110 401.0 230 100.0
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.8e-104 382.9 230 93.0
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 5.1e-104 381.3 230 90.4
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 9.1e-101 370.5 230 88.7
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 2.6e-100 369.0 230 88.3
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 1.3e-99 366.7 230 91.7
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.1e-98 363.6 230 90.4
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.2e-97 360.1 231 92.2
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 6.7e-96 354.4 231 89.6
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 6.7e-96 354.4 230 89.6
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.0e-95 352.8 230 85.7
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 2.0e-95 352.8 231 89.6
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.8e-94 349.0 230 83.5
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 8.2e-94 347.4 230 83.0
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 8.2e-94 347.4 230 86.5
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.1e-93 345.5 231 83.5
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.1e-93 345.5 231 83.5
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 1.5e-92 343.2 231 87.4
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 7.7e-92 340.9 230 83.0
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.7e-91 339.7 230 85.2
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.9e-91 339.0 235 82.6
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 5.0e-91 338.2 230 83.0
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.4e-90 336.7 230 81.3
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.9e-90 336.3 232 84.9
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 3.2e-90 335.5 230 83.9
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 4.2e-90 335.1 231 84.4
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 4.2e-90 335.1 230 81.3
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 5.5e-90 334.7 231 84.4
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 9.4e-90 334.0 233 81.1
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 2.1e-89 332.8 230 83.0
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 2.7e-89 332.4 231 84.0
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 4.7e-89 331.6 230 82.2
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 2.3e-88 329.3 231 80.5
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.3e-88 329.3 230 79.6
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 3.0e-88 328.9 230 82.2
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.1e-87 327.0 230 82.6
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 3.3e-87 325.5 246 74.4
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 9.7e-87 323.9 231 78.8
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 2.8e-86 322.4 231 78.4
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.8e-86 322.4 243 77.4
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.8e-86 322.4 233 79.0
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 3.7e-86 322.0 234 82.1
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 4.8e-86 321.6 231 77.9
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 4.8e-86 321.6 232 82.3
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.8e-86 321.6 231 79.2
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 6.3e-86 321.2 230 74.3
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 6.3e-86 321.2 231 82.3
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 8.2e-86 320.9 231 83.1
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 8.2e-86 320.9 231 83.5
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 8.2e-86 320.9 231 82.3
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 8.2e-86 320.9 231 79.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.8e-85 319.7 231 77.9
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.8e-85 319.7 233 81.1
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.8e-85 319.7 233 81.1
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 4.1e-85 318.5 232 78.4
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.1e-85 318.5 234 80.8
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 7.0e-85 317.8 232 78.4
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 7.0e-85 317.8 231 81.8
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 9.1e-85 317.4 232 80.2
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 9.1e-85 317.4 234 81.2
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 9.1e-85 317.4 232 81.9
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 9.1e-85 317.4 235 81.3
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.0e-84 316.2 231 81.0
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 78.0
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 77.6
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 78.0
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 2.6e-84 315.8 232 77.6
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.6e-84 315.8 230 78.7
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 3.5e-84 315.5 232 77.6
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 4.5e-84 315.1 233 77.7
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 4.5e-84 315.1 233 77.7
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 4.5e-84 315.1 235 77.9
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 5.9e-84 314.7 232 77.2
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 5.9e-84 314.7 232 78.0
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 7.7e-84 314.3 232 77.6
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.7e-83 313.2 230 76.1
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 2.9e-83 312.4 231 76.2
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 2.9e-83 312.4 231 80.1
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 5.0e-83 311.6 232 77.2
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 5.0e-83 311.6 232 77.2
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 5.0e-83 311.6 230 78.7
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.5e-82 309.3 230 76.5
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 5.5e-82 308.1 230 78.7
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 5.5e-82 308.1 232 75.0
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 7.2e-82 307.8 232 74.6
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 9.4e-82 307.4 234 77.8
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 9.4e-82 307.4 230 76.1
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.6e-81 306.6 232 74.1
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 3.6e-81 305.4 230 78.3
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 4.7e-81 305.1 233 74.7
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 8.0e-81 304.3 230 79.1
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.0e-80 303.9 233 79.4
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.0e-80 303.9 284 60.9
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 5.2e-80 301.6 230 70.9
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 6.7e-80 301.2 232 74.6
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 8.8e-80 300.8 237 78.1
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 2.0e-79 299.7 230 77.0
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 3.3e-79 298.9 233 75.5
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 7.5e-79 297.7 230 77.8
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 9.7e-79 297.4 230 69.6
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.3e-78 297.0 230 76.5
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.7e-78 296.6 235 77.9
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 1.7e-78 296.6 231 78.8
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.8e-78 295.8 233 76.4
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 3.7e-78 295.4 226 79.6
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 3.7e-78 295.4 230 74.8
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.4e-77 293.5 230 74.3
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 2.4e-77 292.7 232 77.2
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.4e-77 292.7 234 76.9
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 2.4e-77 292.7 234 76.9
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.1e-77 292.4 238 67.2
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 4.1e-77 292.0 231 77.1
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 7.0e-77 291.2 233 77.3
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 7.7e-76 287.7 251 64.1
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.7e-75 286.6 233 69.5
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.5e-74 282.7 230 69.1
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 5.5e-74 281.6 230 72.2
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 3.6e-73 278.9 231 74.9
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 8.0e-73 277.7 233 65.7
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.4e-72 276.9 232 72.0
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 1.4e-72 276.9 233 71.7
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.0e-72 275.4 218 79.4
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 4.0e-72 275.4 234 68.4
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 8.8e-72 274.2 232 73.3
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 4.4e-71 271.9 230 64.8
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.5e-71 271.2 230 73.5
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.8e-70 268.5 230 73.0
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.1e-69 267.3 232 72.8
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-69 266.2 230 72.6
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.1e-69 265.4 230 72.2
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.6e-68 263.5 271 62.4
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.5e-68 262.3 230 71.7
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.3e-67 259.6 233 72.1
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.5e-66 256.9 230 65.2
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 1.2e-65 253.8 230 70.9
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 2.1e-65 253.1 232 68.1
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 4.7e-65 251.9 230 70.0
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.0e-56 224.2 189 72.0
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 6.8e-56 221.5 120 93.3
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 8.9e-56 221.1 187 73.3
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.6e-52 210.3 154 81.2
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 6.0e-52 208.4 237 59.9
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.0e-51 206.1 231 60.6
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-50 204.1 187 70.6
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.6e-49 199.1 254 52.4
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 1.4e-48 197.2 154 78.6
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 9.8e-47 191.0 120 80.0
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 7.0e-45 184.9 235 55.7
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.1e-43 178.7 119 74.8
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.2e-41 174.1 242 50.8
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-41 174.1 113 78.8
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-41 173.7 113 77.9
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 8.1e-41 171.4 150 74.7
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-40 170.2 113 77.0
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 3.2e-37 159.5 93 86.0
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 9.2e-37 157.9 96 83.3
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 1.0e-35 154.5 121 69.4
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.5e-34 150.6 175 62.3
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 3.6e-33 146.0 97 77.3
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 2.4e-32 143.3 70 97.1
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.4e-29 134.0 70 91.4
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 5.6e-26 122.1 230 43.0
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 8.1e-25 118.2 89 69.7
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-24 117.1 159 50.3
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.4e-24 116.7 97 66.0
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 4.0e-24 115.9 179 52.0
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 4.0e-24 115.9 72 80.6
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-23 114.0 97 67.0
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 6.6e-19 98.6 227 34.8
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.9e-16 88.6 44 95.5
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 7.6e-15 85.1 73 65.8
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.3e-14 84.3 56 76.8
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 9.3e-13 78.2 69 58.0
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 2.3e-11 73.6 118 37.3
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.1e-08 63.2 88 46.6
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.8e-06 56.2 90 45.6


User provided reference genes

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