Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 4.4e-115 417.9 205 100.0
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.1e-25 120.9 116 57.8
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.1e-25 120.9 114 57.9
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.1e-25 120.9 114 57.9
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 3.0e-23 112.8 106 53.8
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 2.6e-22 109.8 128 49.2
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 2.6e-22 109.8 128 49.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 7.5e-22 108.2 128 47.7
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 9.8e-22 107.8 128 47.7
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.3e-21 107.5 128 46.9
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.3e-21 107.5 128 46.9
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.3e-21 107.5 128 46.9
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 2.2e-21 106.7 128 46.9
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 2.2e-21 106.7 128 46.9
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.2e-21 106.7 128 46.1
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 2.2e-21 106.7 128 46.9
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 2.2e-21 106.7 128 47.7
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.2e-21 106.7 128 46.9
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.2e-21 106.7 128 46.9
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 2.8e-21 106.3 128 46.1
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.8e-21 106.3 128 46.1
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 3.7e-21 105.9 128 46.1
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 3.7e-21 105.9 82 63.4
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 4.8e-21 105.5 128 45.3
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 4.8e-21 105.5 128 46.1
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 4.8e-21 105.5 128 46.1
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 4.8e-21 105.5 128 46.1
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 6.3e-21 105.1 128 46.9
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 6.3e-21 105.1 128 46.9
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 8.3e-21 104.8 128 47.7
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 1.1e-20 104.4 128 45.3
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 1.1e-20 104.4 128 45.3
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.1e-20 104.4 128 46.1
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.8e-20 103.6 133 42.9
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 2.4e-20 103.2 128 44.5
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 2.4e-20 103.2 128 47.7
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 3.1e-20 102.8 128 46.1
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 3.1e-20 102.8 128 46.1
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 3.1e-20 102.8 129 47.3
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 4.1e-20 102.4 128 44.5
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 5.4e-20 102.1 128 46.1
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 5.4e-20 102.1 128 46.1
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.4e-20 102.1 128 45.3
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 5.4e-20 102.1 128 46.1
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 5.4e-20 102.1 128 43.8
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 5.4e-20 102.1 130 46.9
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 5.4e-20 102.1 128 46.9
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 7.0e-20 101.7 128 46.9
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 9.1e-20 101.3 128 46.9
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 9.1e-20 101.3 128 44.5
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 9.1e-20 101.3 128 45.3
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 9.1e-20 101.3 128 44.5
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 9.1e-20 101.3 128 46.1
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 9.1e-20 101.3 133 43.6
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.6e-19 100.5 132 43.9
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.6e-19 100.5 128 45.3
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.0e-19 100.1 128 45.3
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.0e-19 100.1 128 45.3
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.0e-19 100.1 128 45.3
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 2.0e-19 100.1 130 45.4
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.7e-19 99.8 128 46.1
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 2.7e-19 99.8 81 61.7
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 2.7e-19 99.8 128 43.0
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.7e-19 99.8 128 43.8
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 2.7e-19 99.8 128 46.1
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.5e-19 99.0 128 44.5
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 4.5e-19 99.0 128 44.5
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 5.9e-19 98.6 128 46.9
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 5.9e-19 98.6 132 40.9
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 5.9e-19 98.6 128 45.3
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.9e-19 98.6 81 60.5
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 5.9e-19 98.6 128 44.5
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 7.7e-19 98.2 142 41.5
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.0e-18 97.8 128 45.3
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.0e-18 97.8 128 45.3
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.0e-18 97.8 128 44.5
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.0e-18 97.8 132 40.9
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.3e-18 97.4 128 43.8
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.3e-18 97.4 128 45.3
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.3e-18 97.4 128 44.5
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.3e-18 97.4 128 44.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.3e-18 97.4 128 45.3
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.3e-18 97.4 132 43.9
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-18 97.1 128 44.5
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.7e-18 97.1 128 45.3
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 1.7e-18 97.1 128 45.3
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.7e-18 97.1 128 42.2
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.3e-18 96.7 137 40.9
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.3e-18 96.7 128 43.8
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 2.3e-18 96.7 128 44.5
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 2.3e-18 96.7 128 44.5
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 2.3e-18 96.7 128 44.5
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.9e-18 96.3 132 41.7
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 2.9e-18 96.3 128 46.1
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 2.9e-18 96.3 81 59.3
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.9e-18 96.3 132 40.9
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.8e-18 95.9 132 41.7
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.8e-18 95.9 132 41.7
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 3.8e-18 95.9 132 41.7
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 3.8e-18 95.9 128 45.3
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 3.8e-18 95.9 128 44.5
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 5.0e-18 95.5 162 37.7
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.5e-18 95.1 146 39.7
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 6.5e-18 95.1 128 45.3
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 6.5e-18 95.1 128 43.8
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 6.5e-18 95.1 132 38.6
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 6.5e-18 95.1 128 43.8
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.5e-17 94.0 128 43.8
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 1.5e-17 94.0 128 43.8
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.5e-17 94.0 119 46.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.9e-17 93.6 120 43.3
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.9e-17 93.6 128 40.6
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.9e-17 93.6 81 59.3
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.9e-17 93.6 148 38.5
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.9e-17 93.6 128 41.4
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.9e-17 93.6 81 58.0
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.9e-17 93.6 133 38.3
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.9e-17 93.6 128 41.4
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 2.5e-17 93.2 128 43.8
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.2e-17 92.4 128 45.3
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 5.5e-17 92.0 128 42.2
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 5.5e-17 92.0 128 44.5
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 7.2e-17 91.7 81 58.0
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 9.5e-17 91.3 128 40.6
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.6e-16 90.5 128 42.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 3.6e-16 89.4 167 37.1
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 8.0e-16 88.2 81 55.6
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.4e-15 87.4 81 55.6
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 6.8e-15 85.1 80 56.2
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.5e-14 84.0 81 51.9
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 4.4e-14 82.4 80 50.0
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.8e-13 79.7 94 48.9
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 6.3e-13 78.6 80 48.8
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 3.1e-12 76.3 81 45.7
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 5.0e-10 68.9 86 50.0
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 8.6e-10 68.2 92 40.2
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-09 67.8 44 68.2
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 4.3e-09 65.9 80 46.2
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.6e-08 63.9 56 55.4
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.6e-08 62.8 47 61.7
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 4.7e-08 62.4 47 61.7
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 4.7e-08 62.4 47 61.7
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 4.7e-08 62.4 47 61.7
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 4.7e-08 62.4 44 61.4
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 8.0e-08 61.6 43 62.8
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 8.0e-08 61.6 43 62.8
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 8.0e-08 61.6 43 62.8
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 8.0e-08 61.6 43 62.8
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.0e-07 61.2 44 63.6
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.3e-07 60.1 47 59.6
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 4.0e-07 59.3 102 39.2
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 8.9e-07 58.2 79 44.3


User provided reference genes

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