Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 0.0e+00 1150.6 668 100.0
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 5.4e-247 857.8 674 76.4
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 5.1e-245 851.3 677 75.8
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.1e-226 790.4 671 68.1
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 2.0e-217 759.6 679 67.2
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.4e-215 753.4 679 67.5
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 4.2e-207 725.3 685 63.5
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 4.2e-199 698.7 690 61.4
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 5.3e-194 681.8 668 61.5
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 4.8e-179 632.1 674 58.8
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 9.5e-167 591.3 686 55.4
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.6e-166 589.3 683 53.1
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.4e-165 587.4 680 54.7
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.2e-164 584.3 706 53.3
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 7.5e-164 581.6 700 51.1
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 2.2e-163 580.1 686 51.2
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 2.2e-163 580.1 680 54.3
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 2.9e-163 579.7 690 52.9
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 2.9e-163 579.7 669 55.8
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 3.7e-163 579.3 683 52.1
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 8.3e-163 578.2 679 53.6
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 8.3e-163 578.2 677 54.8
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 2.4e-162 576.6 682 53.5
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 7.0e-162 575.1 680 52.4
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 2.7e-161 573.2 689 54.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 6.0e-161 572.0 683 53.1
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 7.8e-161 571.6 683 53.7
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.0e-160 571.2 680 54.4
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.3e-160 570.9 684 53.1
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.7e-160 570.5 677 52.7
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 2.3e-160 570.1 698 51.0
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 3.9e-160 569.3 682 53.4
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.1e-159 567.8 679 53.9
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.5e-159 567.4 682 51.5
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.5e-159 567.4 684 52.2
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.5e-159 567.4 678 51.9
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-159 567.0 697 52.4
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.5e-159 566.6 679 53.0
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 2.5e-159 566.6 682 54.3
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 4.3e-159 565.8 679 53.0
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 7.3e-159 565.1 682 52.8
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-158 564.3 684 52.8
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.6e-158 563.9 686 50.1
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-158 563.5 684 52.6
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 3.6e-158 562.8 684 53.9
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 8.0e-158 561.6 677 52.6
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.1e-157 561.2 691 52.7
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.4e-157 560.8 681 53.2
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.8e-157 560.5 701 50.9
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 4.0e-157 559.3 688 49.6
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 6.8e-157 558.5 676 52.8
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 8.9e-157 558.1 682 50.9
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 8.9e-157 558.1 682 50.9
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.2e-156 557.8 702 50.1
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.5e-156 557.4 685 49.8
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 2.6e-156 556.6 680 52.8
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 5.8e-156 555.4 683 52.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 9.8e-156 554.7 686 49.7
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-155 554.3 685 49.6
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.7e-155 553.9 679 53.2
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.7e-155 553.9 692 51.3
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.2e-155 553.5 685 49.6
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.2e-155 553.5 681 51.4
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.9e-155 553.1 678 51.9
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 8.3e-155 551.6 676 51.8
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.3e-155 551.6 690 49.1
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 8.3e-155 551.6 685 50.1
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-154 551.2 684 52.0
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 3.2e-154 549.7 678 50.0
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 4.1e-154 549.3 683 52.7
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 5.4e-154 548.9 683 52.7
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 6.0e-153 545.4 701 50.9
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 6.0e-153 545.4 701 50.9
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.3e-152 543.5 685 51.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 8.6e-152 541.6 678 53.2
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.5e-151 540.8 674 53.3
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 7.3e-151 538.5 689 51.8
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.6e-150 537.3 687 48.8
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.6e-150 537.3 692 53.2
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 6.2e-150 535.4 680 51.2
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 8.9e-149 531.6 687 52.7
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.0e-148 530.4 692 52.7
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.0e-148 530.4 695 50.6
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.7e-147 527.3 673 51.4
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 6.4e-147 525.4 688 48.3
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 6.4e-147 525.4 617 51.4
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 6.4e-147 525.4 687 52.8
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 8.3e-147 525.0 687 48.2
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.4e-146 524.2 680 48.4
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 3.2e-146 523.1 692 51.0
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 3.2e-146 523.1 690 48.4
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 5.4e-146 522.3 614 51.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.2e-145 521.2 664 49.1
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.6e-145 520.8 693 48.2
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.1e-145 520.4 689 47.6
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 2.7e-145 520.0 675 52.0
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.6e-145 519.2 668 50.9
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.0e-144 518.1 687 49.6
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.9e-144 516.2 672 52.2
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.9e-144 516.2 685 47.6
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.5e-143 513.5 689 47.3
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 3.3e-143 513.1 698 47.1
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 9.5e-143 511.5 684 48.2
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.1e-141 508.1 617 49.9
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 1.8e-141 507.3 692 47.7
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.5e-140 504.2 682 50.4
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.4e-140 502.7 672 49.0
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.6e-140 501.9 553 54.8
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.6e-140 501.9 553 54.8
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 7.6e-140 501.9 681 48.9
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 4.9e-139 499.2 689 49.9
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 6.4e-139 498.8 689 47.3
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 8.4e-139 498.4 671 50.1
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.1e-138 498.0 681 50.1
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.1e-138 498.0 555 54.4
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.1e-138 498.0 679 47.6
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 3.5e-137 493.0 633 49.3
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 4.6e-137 492.7 684 46.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.7e-136 490.7 625 49.0
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 1.7e-136 490.7 677 46.8
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 2.3e-136 490.3 677 46.8
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.1e-136 489.2 685 45.1
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 8.7e-136 488.4 686 49.1
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 8.7e-136 488.4 678 46.3
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 4.3e-135 486.1 685 47.2
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.3e-135 486.1 673 49.9
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 7.3e-135 485.3 686 47.5
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 2.4e-133 480.3 675 45.2
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 3.1e-133 479.9 678 46.9
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 3.4e-132 476.5 686 44.2
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 3.2e-130 469.9 568 51.4
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-129 468.0 635 49.4
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 2.1e-129 467.2 685 44.4
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 3.0e-128 463.4 685 45.0
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 6.6e-128 462.2 680 48.4
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.5e-127 461.1 671 45.6
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.9e-127 460.7 675 45.6
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.6e-126 456.4 543 52.9
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.3e-123 448.0 689 45.1
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.4e-122 442.6 682 44.3
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.3e-117 426.0 676 43.6
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.5e-116 424.5 635 46.3
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.4e-116 423.3 686 44.0
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 9.3e-114 415.2 549 47.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 2.1e-113 414.1 685 43.8
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.1e-110 404.1 677 43.7
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.0e-104 383.6 659 44.8
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 2.1e-97 360.9 685 37.5
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 8.8e-96 355.5 611 45.2
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 4.3e-95 353.2 583 41.0
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 8.5e-91 339.0 457 47.5
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.2e-81 308.5 676 37.0
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 8.8e-80 302.4 420 50.0
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 3.1e-77 293.9 441 47.6
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.6e-73 281.6 429 44.5
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 8.0e-73 279.3 678 36.9
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 6.3e-70 269.6 544 42.1
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.8e-64 251.5 546 35.9
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 6.8e-64 249.6 222 61.7
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 9.1e-61 239.2 325 44.3
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.6e-57 228.4 415 37.1
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 8.6e-51 206.1 642 37.4
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 4.1e-45 187.2 269 40.9
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 5.6e-42 176.8 668 30.2
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 2.8e-25 121.3 112 50.0
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.1e-21 109.4 145 49.7
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.4e-21 108.2 109 48.6
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 2.7e-20 104.8 79 67.1
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.7e-19 102.1 213 44.1
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 5.3e-16 90.5 83 55.4
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 2.6e-15 88.2 132 37.1
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 9.3e-13 79.7 78 55.1
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.5e-10 72.4 284 24.6
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 5.6e-10 70.5 61 52.5
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 2.8e-09 68.2 136 39.7
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.2e-09 67.0 75 50.7
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 8.1e-09 66.6 44 65.9
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 8.1e-09 66.6 285 26.7


User provided reference genes

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