Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_19754_v3 Cicer arietinum L. HOM05D001296 ORTHO05D003826 3.1e-53 211.5 102 100.0
Ca_27102_v3 Cicer arietinum L. HOM05D001296 ORTHO05D003826 6.3e-38 160.6 81 93.8
Psat5g217600 Pisum sativum HOM05D001296 ORTHO05D003826 1.8e-21 105.9 76 67.1
Medtr3g018620 Medicago truncatula HOM05D001296 ORTHO05D003826 7.8e-20 100.5 76 63.2
Lj3g0017099 Lotus japonicus HOM05D001296 ORTHO05D003826 1.2e-15 86.7 64 62.5
arahy.Tifrunner.gnm1.ann1.40ITVF Arachis hypogaea HOM05D001296 ORTHO05D003826 8.3e-14 80.5 87 50.6
arahy.Tifrunner.gnm1.ann1.2M3JSP Arachis hypogaea HOM05D001296 ORTHO05D003826 1.1e-13 80.1 87 50.6
Glyma.11G154500 Glycine max HOM05D001296 ORTHO05D003826 3.2e-13 78.6 75 54.7
Lalb_Chr04g0264031 Lupinus albus HOM05D001296 ORTHO05D003826 6.0e-12 74.3 80 50.0
MD07G1036700 Malus domestica HOM05D001296 ORTHO05D003826 7.8e-12 73.9 68 52.9
GSVIVG01000665001 Vitis vinifera HOM05D001296 ORTHO05D000008 7.8e-12 73.9 69 50.7
Thecc.10G166600 Theobroma cacao HOM05D001296 ORTHO05D003826 1.3e-11 73.2 69 53.6
Actinidia02193 Actinidia chinensis HOM05D001296 ORTHO05D003826 2.3e-11 72.4 70 50.0
VMungo1080G0211 Vigna mungo HOM05D001296 ORTHO05D003826 2.3e-11 72.4 75 52.0
COL.COLO4_21454 Corchorus olitorius HOM05D001296 ORTHO05D003826 3.0e-11 72.0 79 49.4
Phvul.005G029700 Phaseolus vulgaris HOM05D001296 ORTHO05D003826 3.0e-11 72.0 75 53.3
RcHm_v2.0_Chr1g0321951 Rosa chinensis HOM05D001296 ORTHO05D003826 5.0e-11 71.2 74 45.9
Atru.chr12.1363 Acer truncatum HOM05D001296 ORTHO05D003826 8.6e-11 70.5 79 50.6
CANSAT64G2108 Cannabis sativa HOM05D001296 ORTHO05D003826 8.6e-11 70.5 70 48.6
TAR633G1527 Trochodendron aralioides HOM05D001296 ORTHO05D003826 8.6e-11 70.5 74 51.4
BolC4t25376H Brassica oleracea HOM05D001296 ORTHO05D003826 1.1e-10 70.1 76 47.4
AUR62037204 Chenopodium quinoa HOM05D001296 ORTHO05D003826 1.1e-10 70.1 98 44.9
MBI11_g32500_MAGBIO Magnolia biondii HOM05D001296 ORTHO05D003826 1.1e-10 70.1 70 50.0
vmacro07932 Vaccinium macrocarpon HOM05D001296 ORTHO05D003826 1.1e-10 70.1 66 51.5
Ciclev10005821m.g Citrus clementina HOM05D001296 ORTHO05D003826 1.5e-10 69.7 79 46.8
HanXRQChr17g0563991 Helianthus annuus HOM05D001296 ORTHO05D003826 1.5e-10 69.7 80 48.8
Prupe.2G032100 Prunus persica HOM05D001296 ORTHO05D003826 1.5e-10 69.7 74 47.3
BcaB02g08445 Brassica carinata HOM05D001296 ORTHO05D003826 2.5e-10 68.9 78 47.4
Carub.0005s2111 Capsella rubella HOM05D001296 ORTHO05D003826 2.5e-10 68.9 76 47.4
Duzib114G0332 Durio zibethinus HOM05D001296 ORTHO05D003826 2.5e-10 68.9 69 50.7
Duzib114G1000 Durio zibethinus HOM05D001296 ORTHO05D003826 2.5e-10 68.9 69 50.7
Dinv08499 Davidia involucrata HOM05D001296 ORTHO05D003826 3.3e-10 68.6 70 48.6
Lj2A395G23 Lonicera japonica HOM05D001296 ORTHO05D003826 3.3e-10 68.6 70 47.1
Nn2g14902 Nelumbo nucifera HOM05D001296 ORTHO05D003826 3.3e-10 68.6 69 49.3
Potri.001G025500 Populus trichocarpa HOM05D001296 ORTHO05D003826 3.3e-10 68.6 70 47.1
Sp5g07930 Schrenkiella parvula HOM05D001296 ORTHO05D003826 3.3e-10 68.6 79 43.0
vmacro07817 Vaccinium macrocarpon HOM05D001296 ORTHO05D003826 3.3e-10 68.6 70 50.0
Actinidia09272 Actinidia chinensis HOM05D001296 ORTHO05D003826 4.3e-10 68.2 70 50.0
EL10Ac2g02825 Beta vulgaris HOM05D001296 ORTHO05D003826 4.3e-10 68.2 81 44.4
Actinidia32316 Actinidia chinensis HOM05D001296 ORTHO05D003826 5.6e-10 67.8 70 50.0
Thhalv10011060m.g Eutrema salsugineum HOM05D001296 ORTHO05D003826 5.6e-10 67.8 76 47.4
FAN03G2947 Fragaria x ananassa HOM05D001296 ORTHO05D003826 5.6e-10 67.8 65 52.3
RcHm_v2.0_Chr3g0472601 Rosa chinensis HOM05D001296 ORTHO05D003826 5.6e-10 67.8 63 50.8
Hund24630 Selenicereus undatus HOM05D001296 ORTHO05D003826 7.3e-10 67.4 70 44.3
CSS0011207 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D003826 9.5e-10 67.0 68 48.5
FvH4_7g02710 Fragaria vesca HOM05D001296 ORTHO05D003826 9.5e-10 67.0 65 50.8
FAN06G3594 Fragaria x ananassa HOM05D001296 ORTHO05D003826 9.5e-10 67.0 65 50.8
Lj2C395G5 Lonicera japonica HOM05D001296 ORTHO05D003826 9.5e-10 67.0 68 45.6
BcaC02g09065 Brassica carinata HOM05D001296 ORTHO05D003826 1.2e-09 66.6 78 46.2
C04p38030 Brassica napus HOM05D001296 ORTHO05D003826 1.6e-09 66.2 76 46.1
BraA04t16234Z Brassica rapa HOM05D001296 ORTHO05D003826 1.6e-09 66.2 76 46.1
CSS0028523 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D003826 1.6e-09 66.2 70 47.1
CSS0029488 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D003826 1.6e-09 66.2 70 47.1
CARHR164390 Cardamine hirsuta HOM05D001296 ORTHO05D003826 1.6e-09 66.2 76 46.1
AUR62026846 Chenopodium quinoa HOM05D001296 ORTHO05D003826 1.6e-09 66.2 84 45.2
Rhsim03G0008600 Rhododendron simsii HOM05D001296 ORTHO05D003826 1.6e-09 66.2 67 47.8
A04p05340 Brassica napus HOM05D001296 ORTHO05D003826 2.1e-09 65.9 90 44.4
Dinv09257 Davidia involucrata HOM05D001296 ORTHO05D003826 2.1e-09 65.9 70 47.1
Dinv09281 Davidia involucrata HOM05D001296 ORTHO05D003826 2.1e-09 65.9 70 47.1
ECA234G3519 Erigeron canadensis HOM05D001296 ORTHO05D003826 2.1e-09 65.9 66 51.5
THA.LOC104824188 Tarenaya hassleriana HOM05D001296 ORTHO05D003826 2.1e-09 65.9 79 40.5
AT3G54490 Arabidopsis thaliana HOM05D001296 ORTHO05D003826 2.8e-09 65.5 76 44.7
AUR62031991 Chenopodium quinoa HOM05D001296 ORTHO05D003826 2.8e-09 65.5 66 45.5
Cc06_g18820 Coffea canephora HOM05D001296 ORTHO05D003826 2.8e-09 65.5 75 46.7
Eucgr.K01636 Eucalyptus grandis HOM05D001296 ORTHO05D003826 2.8e-09 65.5 70 47.1
FAN01G3004 Fragaria x ananassa HOM05D001296 ORTHO05D003826 2.8e-09 65.5 65 50.8
Sc13g0001300 Simmondsia chinensis HOM05D001296 ORTHO05D003826 2.8e-09 65.5 70 45.7
AL5G35540 Arabidopsis lyrata HOM05D001296 ORTHO05D003826 3.6e-09 65.1 80 42.5
CSS0024715 Camellia sinensis var. sinensis HOM05D001296 ORTHO05D003826 3.6e-09 65.1 68 47.1
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 3.6e-09 65.1 70 47.1
EL10Ac3g07213 Beta vulgaris HOM05D001296 ORTHO05D003826 4.7e-09 64.7 70 44.3
GSVIVG01033595001 Vitis vinifera HOM05D001296 ORTHO05D003826 4.7e-09 64.7 70 41.4
TWI77G0613 Tripterygium wilfordii HOM05D001296 ORTHO05D003826 6.2e-09 64.3 68 47.1
Atru.chr1.1488 Acer truncatum HOM05D001296 ORTHO05D003826 8.0e-09 63.9 70 45.7
DCAR_020548 Daucus carota HOM05D001296 ORTHO05D003826 8.0e-09 63.9 70 45.7
HPP92_023101 Vanilla planifolia HOM05D001296 ORTHO05D003826 8.0e-09 63.9 70 42.9
AUR62030335 Chenopodium quinoa HOM05D001296 ORTHO05D003826 1.1e-08 63.5 66 43.9
TWI38G1653 Tripterygium wilfordii HOM05D001296 ORTHO05D003826 1.1e-08 63.5 77 44.2
Sed0018242 Sechium edule HOM05D001296 ORTHO05D003826 1.8e-08 62.8 70 41.4
HanXRQChr09g0259961 Helianthus annuus HOM05D001296 ORTHO05D003826 2.3e-08 62.4 70 44.3
Lsat_1_v5_gn_4_30101 Lactuca sativa HOM05D001296 ORTHO05D003826 2.3e-08 62.4 78 43.6
Lsat_1_v5_gn_5_159481 Lactuca sativa HOM05D001296 ORTHO05D003826 2.3e-08 62.4 70 42.9
CAN.G134.219 Capsicum annuum HOM05D001296 ORTHO05D003826 3.1e-08 62.0 70 41.4
CAN.G1563.11 Capsicum annuum HOM05D001296 ORTHO05D003826 3.1e-08 62.0 70 42.9
Migut.B01217 Erythranthe guttata HOM05D001296 ORTHO05D003826 3.1e-08 62.0 88 44.3
RhsimUnG0219900 Rhododendron simsii HOM05D000657 ORTHO05D002092 3.1e-08 62.0 70 45.7
RcHm_v2.0_Chr2g0125071 Rosa chinensis HOM05D001296 ORTHO05D003826 3.1e-08 62.0 70 44.3
Cpa.g.sc5.204 Carica papaya HOM05D001296 ORTHO05D003826 4.0e-08 61.6 70 47.1
FAN14G4429 Fragaria x ananassa HOM05D001296 ORTHO05D003826 4.0e-08 61.6 70 44.3
Hma1.2p1_1251F.1_g270430 Hydrangea macrophylla HOM05D001296 ORTHO05D003826 4.0e-08 61.6 78 44.9
Lalb_Chr22g0357351 Lupinus albus HOM05D001296 ORTHO05D003826 4.0e-08 61.6 82 40.2
PSO339G6570 Papaver somniferum HOM05D001296 ORTHO05D003826 4.0e-08 61.6 67 44.8
PSO384G3462 Papaver somniferum HOM05D001296 ORTHO05D003826 4.0e-08 61.6 67 44.8
Nitab4.5_0008307g0010 Nicotiana tabacum HOM05D001296 ORTHO05D003826 5.2e-08 61.2 82 39.0
Sed0005510 Sechium edule HOM05D001296 ORTHO05D003826 5.2e-08 61.2 70 40.0
ECA248G2693 Erigeron canadensis HOM05D001296 ORTHO05D003826 6.8e-08 60.8 72 40.3
FvH4_6g25210 Fragaria vesca HOM05D001296 ORTHO05D003826 6.8e-08 60.8 70 44.3
FAN09G0772 Fragaria x ananassa HOM05D002247 ORTHO05D002659 6.8e-08 60.8 70 44.3
Glyma.03G129500 Glycine max HOM05D001296 ORTHO05D003826 6.8e-08 60.8 76 39.5
Medtr3g058520 Medicago truncatula HOM05D001296 ORTHO05D003826 6.8e-08 60.8 59 54.2
Solyc01g098320.4 Solanum lycopersicum HOM05D001296 ORTHO05D003826 6.8e-08 60.8 80 37.5
Solyc04g040170.3 Solanum lycopersicum HOM05D001296 ORTHO05D003826 6.8e-08 60.8 70 40.0
Sopen01g041880 Solanum pennellii HOM05D001296 ORTHO05D003826 6.8e-08 60.8 80 37.5
Sopen04g009960 Solanum pennellii HOM05D001296 ORTHO05D003826 6.8e-08 60.8 70 40.0
PGSC0003DMG400010646 Solanum tuberosum HOM05D001296 ORTHO05D003826 6.8e-08 60.8 70 40.0
Ciclev10021999m.g Citrus clementina HOM05D001296 ORTHO05D003826 8.9e-08 60.5 70 40.0
Potri.016G038500 Populus trichocarpa HOM05D001296 ORTHO05D003826 8.9e-08 60.5 70 42.9
PGSC0003DMG402022480 Solanum tuberosum HOM05D001296 ORTHO05D003826 8.9e-08 60.5 78 37.2
Lj1g0025299 Lotus japonicus HOM05D001296 ORTHO05D003826 1.2e-07 60.1 77 39.0
Medtr7g090220 Medicago truncatula HOM05D001296 ORTHO05D003826 1.2e-07 60.1 68 41.2
Nitab4.5_0003134g0160 Nicotiana tabacum HOM05D001296 ORTHO05D003826 1.2e-07 60.1 83 36.1
Ah.13g076980 Amaranthus hybridus HOM05D001296 ORTHO05D003826 1.5e-07 59.7 70 38.6
Cfa016691 Carpinus fangiana HOM05D001296 ORTHO05D003826 1.5e-07 59.7 70 42.9
Haze_19718 Corylus avellana HOM05D001296 ORTHO05D003826 1.5e-07 59.7 70 42.9
FAN02G0156 Fragaria x ananassa HOM05D001296 ORTHO05D003826 1.5e-07 59.7 69 44.9
Os11g0143400 Oryza sativa ssp. japonica HOM05D001296 ORTHO05D003826 1.5e-07 59.7 75 45.3
Os12g0139500 Oryza sativa ssp. japonica HOM05D001296 ORTHO05D003826 1.5e-07 59.7 75 45.3
Aqoxy2G00335 Aquilegia oxysepala HOM05D001296 ORTHO05D003826 2.0e-07 59.3 70 47.1
arahy.Tifrunner.gnm1.ann1.JAEG6E Arachis hypogaea HOM05D001296 ORTHO05D003826 2.0e-07 59.3 77 41.6
CARHR167280 Cardamine hirsuta HOM05D001296 ORTHO05D003826 2.0e-07 59.3 68 41.2
CiPaw.09G045400 Carya illinoinensis HOM05D001296 ORTHO05D003826 2.0e-07 59.3 70 44.3
MELO3C009776.2 Cucumis melo HOM05D001296 ORTHO05D003826 2.0e-07 59.3 70 40.0
Hma1.2p1_0521F.1_g171480 Hydrangea macrophylla HOM05D001296 ORTHO05D003826 2.0e-07 59.3 70 44.3
MD14G1084600 Malus domestica HOM05D001296 ORTHO05D003826 2.0e-07 59.3 70 42.9
Psat3g077800 Pisum sativum HOM05D001296 ORTHO05D003826 2.0e-07 59.3 68 42.6
Prupe.7G043600 Prunus persica HOM05D001296 ORTHO05D003826 2.0e-07 59.3 68 42.6
THA.LOC104803274 Tarenaya hassleriana HOM05D001296 ORTHO05D003826 2.0e-07 59.3 74 43.2
arahy.Tifrunner.gnm1.ann1.3QF1KH Arachis hypogaea HOM05D001296 ORTHO05D003826 2.6e-07 58.9 77 41.6
ClCG10G016030 Citrullus lanatus HOM05D001296 ORTHO05D003826 2.6e-07 58.9 70 40.0
CsaV3_3G040420 Cucumis sativus L. HOM05D001296 ORTHO05D003826 2.6e-07 58.9 70 38.6
Sabra16G0040300 Salix brachista HOM05D001296 ORTHO05D003826 2.6e-07 58.9 70 41.4
Sabra16G0045000 Salix brachista HOM05D001296 ORTHO05D003826 2.6e-07 58.9 70 41.4
Sabra16G0045100 Salix brachista HOM05D001296 ORTHO05D003826 2.6e-07 58.9 70 41.4
TPR.G9316 Trifolium pratense HOM05D001296 ORTHO05D003826 2.6e-07 58.9 77 39.0
ATR0075G025 Amborella trichopoda HOM05D001296 ORTHO05D003826 3.4e-07 58.5 74 36.5
PGR142G0705 Punica granatum HOM05D001296 ORTHO05D003826 4.4e-07 58.2 68 42.6
Peaxi162Scf00660g00117 Petunia axillaris HOM05D001296 ORTHO05D003826 5.8e-07 57.8 66 42.4
QL04p014286 Quercus lobata HOM05D001296 ORTHO05D003826 5.8e-07 57.8 75 44.0
Sp4g23630 Schrenkiella parvula HOM05D001296 ORTHO05D003826 5.8e-07 57.8 67 43.3
Thecc.05G140300 Theobroma cacao HOM05D001296 ORTHO05D003826 5.8e-07 57.8 69 43.5
Duzib128G1037 Durio zibethinus HOM05D001296 ORTHO05D003826 7.5e-07 57.4 70 41.4
Peaxi162Scf00502g00082 Petunia axillaris HOM05D001296 ORTHO05D003826 7.5e-07 57.4 70 38.6
SalBow6G2362 Salvia bowleyana HOM05D001296 ORTHO05D003826 7.5e-07 57.4 74 45.9
CDE05G1541 Ceratophyllum demersum HOM05D001296 ORTHO05D003826 9.8e-07 57.0 58 51.7
MD00G1170800 Malus domestica HOM05D001296 ORTHO05D003826 9.8e-07 57.0 70 41.4
Gorai.006G133300 Gossypium raimondii HOM05D001296 ORTHO05D003826 1.3e-06 56.6 74 39.2
MSTRG.6383 Avicennia marina HOM05D001296 ORTHO05D003826 1.7e-06 56.2 74 41.9
Ca_08405_v3 Cicer arietinum L. HOM05D001296 ORTHO05D003826 1.7e-06 56.2 59 45.8
Gohir.A09G118700 Gossypium hirsutum HOM05D001296 ORTHO05D003826 1.7e-06 56.2 69 43.5
Oeu057803.2 Olea europaea HOM05D001296 ORTHO05D003826 1.7e-06 56.2 68 39.7
VMungo1383G0914 Vigna mungo HOM05D001296 ORTHO05D003826 1.7e-06 56.2 76 38.2
Manes.08G057400 Manihot esculenta HOM05D001296 ORTHO05D003826 2.2e-06 55.8 70 42.9
SGA_v2.0_scaffold96G28930 Striga asiatica HOM05D001296 ORTHO05D003826 2.2e-06 55.8 93 33.3
Zm00001eb093130 Zea mays HOM05D001296 ORTHO05D003826 2.2e-06 55.8 64 46.9
CARHR136440 Cardamine hirsuta HOM05D001296 ORTHO05D003826 2.9e-06 55.5 67 40.3
Gohir.D09G115442 Gossypium hirsutum HOM05D001296 ORTHO05D003826 2.9e-06 55.5 69 42.0
Sp5g05500 Schrenkiella parvula HOM05D001296 ORTHO05D003826 2.9e-06 55.5 75 38.7
Lalb_Chr14g0365901 Lupinus albus HOM05D001296 ORTHO05D003826 3.7e-06 55.1 78 38.5
Carub.0005s2389 Capsella rubella HOM05D001296 ORTHO05D003826 4.9e-06 54.7 74 37.8
QL07p008420 Quercus lobata HOM05D001296 ORTHO05D003826 4.9e-06 54.7 70 38.6
QL07p008705 Quercus lobata HOM05D001296 ORTHO05D003826 4.9e-06 54.7 70 38.6
Aa31LG10G11320 Aethionema arabicum HOM05D001296 ORTHO05D003826 6.4e-06 54.3 68 41.2
Aa31LG10G12010 Aethionema arabicum HOM05D001296 ORTHO05D003826 6.4e-06 54.3 74 39.2
Manes.09G007600 Manihot esculenta HOM05D001296 ORTHO05D003826 6.4e-06 54.3 70 41.4
SGA_v2.0_scaffold105G30325 Striga asiatica HOM05D001296 ORTHO05D003826 6.4e-06 54.3 69 34.8
A09p50010 Brassica napus HOM05D001296 ORTHO05D003826 8.3e-06 53.9 80 37.5
BraA09t40451Z Brassica rapa HOM05D001296 ORTHO05D003826 8.3e-06 53.9 80 37.5
SHI28263 Sapria himalayana HOM05D001296 ORTHO05D003826 8.3e-06 53.9 70 40.0


User provided reference genes

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