Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18983_v3 Cicer arietinum L. HOM05D001312 ORTHO05D001832 1.7e-134 482.6 241 100.0
TPR.G22567 Trifolium pratense HOM05D001312 ORTHO05D001832 5.0e-94 348.2 221 79.2
Glyma.11G095800 Glycine max HOM05D001312 ORTHO05D001832 5.6e-85 318.2 223 73.1
Glyma.12G021900 Glycine max HOM05D001312 ORTHO05D001832 7.8e-79 297.7 221 69.7
Phvul.011G023900 Phaseolus vulgaris HOM05D001312 ORTHO05D001832 6.2e-76 288.1 221 68.8
VMungo1127G2034 Vigna mungo HOM05D001312 ORTHO05D001832 2.4e-75 286.2 221 67.9
Medtr4g076180 Medicago truncatula HOM05D001312 ORTHO05D001832 1.4e-72 276.9 212 70.3
Lalb_Chr03g0024551 Lupinus albus HOM05D001312 ORTHO05D001832 4.2e-72 275.4 221 64.7
Psat7g179760 Pisum sativum HOM05D001312 ORTHO05D001832 2.7e-71 272.7 221 66.5
Lj3g0017534 Lotus japonicus HOM05D001312 ORTHO05D001832 2.3e-70 269.6 219 67.1
Lalb_Chr19g0139691 Lupinus albus HOM05D001312 ORTHO05D001832 1.3e-68 263.8 221 62.4
arahy.Tifrunner.gnm1.ann1.BS1MHB Arachis hypogaea HOM05D001312 ORTHO05D001832 7.9e-63 244.6 222 58.1
arahy.Tifrunner.gnm1.ann1.9N20R9 Arachis hypogaea HOM05D001312 ORTHO05D001832 3.0e-62 242.7 222 58.1
RcHm_v2.0_Chr5g0051171 Rosa chinensis HOM05D001312 ORTHO05D001832 2.8e-44 183.0 230 48.3
Haze_23185 Corylus avellana HOM05D001312 ORTHO05D001832 6.3e-44 181.8 230 50.4
MD03G1169900 Malus domestica HOM05D001312 ORTHO05D001832 2.4e-43 179.9 228 48.2
Potri.001G254300 Populus trichocarpa HOM05D001312 ORTHO05D001832 2.0e-42 176.8 228 44.3
MD11G1187100 Malus domestica HOM05D001312 ORTHO05D001832 7.6e-42 174.9 228 46.9
CiPaw.14G115800 Carya illinoinensis HOM05D001312 ORTHO05D001832 1.0e-41 174.5 209 51.7
Dinv22150 Davidia involucrata HOM05D001312 ORTHO05D001832 5.0e-41 172.2 220 48.2
Sabra16G0155000 Salix brachista HOM05D001312 ORTHO05D001832 1.9e-40 170.2 212 47.6
Prupe.4G257200 Prunus persica HOM05D001312 ORTHO05D001832 2.5e-40 169.9 230 45.7
CiPaw.13G153400 Carya illinoinensis HOM05D001312 ORTHO05D001832 3.6e-39 166.0 200 47.5
Potri.009G049100 Populus trichocarpa HOM05D001312 ORTHO05D001832 3.6e-39 166.0 216 47.2
Manes.06G161100 Manihot esculenta HOM05D001312 ORTHO05D001832 4.6e-39 165.6 204 48.5
Sabra09G0035800 Salix brachista HOM05D001312 ORTHO05D001832 4.6e-39 165.6 216 45.4
Manes.14G005800 Manihot esculenta HOM05D001312 ORTHO05D001832 5.1e-38 162.2 227 44.9
Cfa009825 Carpinus fangiana HOM05D001312 ORTHO05D001832 6.7e-38 161.8 201 50.2
FAN25G1359 Fragaria x ananassa HOM05D001312 ORTHO05D001832 6.7e-38 161.8 230 42.6
Hma1.2p1_1920F.1_g307540 Hydrangea macrophylla HOM05D001312 ORTHO05D001832 1.5e-37 160.6 205 47.3
Rhsim13G0217000 Rhododendron simsii HOM05D001312 ORTHO05D001832 1.5e-37 160.6 229 43.7
FAN16G2548 Fragaria x ananassa HOM05D001312 ORTHO05D001832 3.7e-36 156.0 230 41.3
Solyc11g065160.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 4.8e-36 155.6 204 46.6
CAN.G633.5 Capsicum annuum HOM05D001312 ORTHO05D001832 6.3e-36 155.2 204 45.6
Sopen11g024890 Solanum pennellii HOM05D001312 ORTHO05D001832 6.3e-36 155.2 204 46.1
Peaxi162Scf00004g03919 Petunia axillaris HOM05D001312 ORTHO05D001832 8.2e-36 154.8 204 46.1
FAN21G0684 Fragaria x ananassa HOM05D001312 ORTHO05D008204 9.0e-35 151.4 230 40.9
FvH4_3g28290 Fragaria vesca HOM05D001312 ORTHO05D001832 1.2e-34 151.0 230 40.4
MELO3C015157.2 Cucumis melo HOM05D001312 ORTHO05D001832 1.5e-34 150.6 205 43.9
TWI23G1095 Tripterygium wilfordii HOM05D001312 ORTHO05D001832 1.5e-34 150.6 206 44.7
Actinidia06935 Actinidia chinensis HOM05D001312 ORTHO05D001832 2.0e-34 150.2 228 40.8
FAN11G1475 Fragaria x ananassa HOM05D001312 ORTHO05D001832 2.6e-34 149.8 230 40.9
Nitab4.5_0006878g0030 Nicotiana tabacum HOM05D001312 ORTHO05D001832 3.4e-34 149.4 202 45.5
Nitab4.5_0002726g0060 Nicotiana tabacum HOM05D001312 ORTHO05D001832 5.9e-34 148.7 197 46.2
Atru.chr3.2620 Acer truncatum HOM05D001312 ORTHO05D001832 7.7e-34 148.3 210 43.3
ClCG03G012960 Citrullus lanatus HOM05D001312 ORTHO05D001832 1.7e-33 147.1 230 41.3
CsaV3_1G043090 Cucumis sativus L. HOM05D001312 ORTHO05D001832 2.9e-33 146.4 206 44.2
Gohir.D07G126400 Gossypium hirsutum HOM05D001312 ORTHO05D001832 6.5e-33 145.2 209 45.9
Gohir.D07G126500 Gossypium hirsutum HOM05D001312 ORTHO05D001832 6.5e-33 145.2 200 44.5
Gohir.A07G122300 Gossypium hirsutum HOM05D001312 ORTHO05D001832 8.5e-33 144.8 208 45.2
Gorai.001G136300 Gossypium raimondii HOM05D001312 ORTHO05D001832 1.4e-32 144.1 208 44.7
QL01p018031 Quercus lobata HOM05D001312 ORTHO05D001832 3.2e-32 142.9 153 48.4
Thecc.09G241500 Theobroma cacao HOM05D001312 ORTHO05D001832 3.2e-32 142.9 206 42.2
Gorai.001G136400 Gossypium raimondii HOM05D001312 ORTHO05D001832 5.5e-32 142.1 200 44.0
AUR62000168 Chenopodium quinoa HOM05D001312 ORTHO05D001832 7.2e-32 141.7 226 42.9
Ah.06g194370 Amaranthus hybridus HOM05D001312 ORTHO05D001832 2.1e-31 140.2 229 42.4
EL10Ac4g10179 Beta vulgaris HOM05D001312 ORTHO05D001832 2.7e-31 139.8 262 38.2
AUR62039843 Chenopodium quinoa HOM05D001312 ORTHO05D001832 3.6e-31 139.4 207 44.0
Sed0027883 Sechium edule HOM05D001312 ORTHO05D001832 6.1e-31 138.7 206 41.3
COL.COLO4_36486 Corchorus olitorius HOM05D001312 ORTHO05D008204 7.9e-31 138.3 215 40.0
TWI39G0267 Tripterygium wilfordii HOM05D001312 ORTHO05D001832 1.0e-30 137.9 209 39.2
Gohir.A07G122400 Gossypium hirsutum HOM05D001312 ORTHO05D001832 1.4e-30 137.5 199 43.7
ECA233G2461 Erigeron canadensis HOM05D001312 ORTHO05D001832 2.3e-30 136.7 195 41.0
Hund21993 Selenicereus undatus HOM05D001312 ORTHO05D001832 3.9e-30 136.0 200 41.5
TAR623G0760 Trochodendron aralioides HOM05D001312 ORTHO05D001832 1.1e-29 134.4 148 48.0
Cc01_g05990 Coffea canephora HOM05D001312 ORTHO05D001832 1.5e-29 134.0 210 41.0
Lsat_1_v5_gn_6_71181 Lactuca sativa HOM05D001312 ORTHO05D001832 2.0e-29 133.7 203 42.4
GSVIVG01037231001 Vitis vinifera HOM05D001312 ORTHO05D001832 2.0e-29 133.7 202 41.1
Ciclev10014020m.g Citrus clementina HOM05D001312 ORTHO05D001832 2.6e-29 133.3 172 47.1
Oeu038110.1 Olea europaea HOM05D001312 ORTHO05D001832 4.4e-29 132.5 201 42.8
Eucgr.J00728 Eucalyptus grandis HOM05D001312 ORTHO05D001832 9.7e-29 131.3 231 37.7
Aa31LG3G14830 Aethionema arabicum HOM05D001312 ORTHO05D001832 1.3e-28 131.0 209 40.2
CARHR200700 Cardamine hirsuta HOM05D001312 ORTHO05D001832 1.7e-28 130.6 189 41.8
PGR119G2014 Punica granatum HOM05D001312 ORTHO05D001832 2.8e-28 129.8 208 41.3
MSTRG.21358 Avicennia marina HOM05D001312 ORTHO05D001832 4.8e-28 129.0 239 37.2
AL6G23200 Arabidopsis lyrata HOM05D001312 ORTHO05D001832 6.3e-28 128.6 207 39.1
Carub.0006s1090 Capsella rubella HOM05D001312 ORTHO05D001832 4.1e-27 125.9 207 39.6
Oeu001484.2 Olea europaea HOM05D001312 ORTHO05D001832 6.9e-27 125.2 204 41.2
SGA_v2.0_scaffold29G12279 Striga asiatica HOM05D001312 ORTHO05D001832 1.2e-26 124.4 198 40.4
Nn7g36465 Nelumbo nucifera HOM05D001312 ORTHO05D001832 2.6e-26 123.2 148 46.6
BcaNung01192 Brassica carinata HOM05D001312 ORTHO05D001832 1.7e-25 120.6 214 38.3
BolC2t06519H Brassica oleracea HOM05D001312 ORTHO05D001832 1.7e-25 120.6 214 38.3
BcaNung03620 Brassica carinata HOM05D001312 ORTHO05D001832 2.2e-25 120.2 209 36.4
Migut.D00642 Erythranthe guttata HOM05D001312 ORTHO05D001832 2.2e-25 120.2 180 38.9
AT5G12400 Arabidopsis thaliana HOM05D001312 ORTHO05D001832 2.9e-25 119.8 214 36.0
BcaB01g05404 Brassica carinata HOM05D001312 ORTHO05D001832 3.8e-25 119.4 207 36.2
C02p05740 Brassica napus HOM05D001312 ORTHO05D001832 1.1e-24 117.9 214 37.9
THA.LOC104811188 Tarenaya hassleriana HOM05D001312 ORTHO05D001832 1.4e-24 117.5 199 39.2
Gohir.A07G122500 Gossypium hirsutum HOM05D001312 ORTHO05D001832 1.9e-24 117.1 185 42.2
BraA02t05132Z Brassica rapa HOM05D001312 ORTHO05D001832 3.2e-24 116.3 227 36.1
A02p01520 Brassica napus HOM05D001312 ORTHO05D001832 9.4e-24 114.8 227 36.1
Zm00001eb329910 Zea mays HOM05D001312 ORTHO05D001832 1.6e-23 114.0 115 49.6
Thhalv10012427m.g Eutrema salsugineum HOM05D001312 ORTHO05D001832 5.2e-22 109.0 210 37.6
A03p05600 Brassica napus HOM05D001312 ORTHO05D001832 1.1e-21 107.8 176 39.8
BraA03t09897Z Brassica rapa HOM05D001312 ORTHO05D001832 1.1e-21 107.8 176 39.8
C03p06550 Brassica napus HOM05D001312 ORTHO05D001832 2.6e-21 106.7 178 39.3
BolC3t13155H Brassica oleracea HOM05D001312 ORTHO05D001832 2.6e-21 106.7 178 39.3
Aqoxy2G00289 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 3.3e-21 106.3 234 31.6
Dinv36206 Davidia involucrata HOM05D001312 ORTHO05D001832 9.7e-21 104.8 71 69.0
CSS0034120 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D001832 2.2e-20 103.6 237 34.6
BcaB08g37000 Brassica carinata HOM05D001312 ORTHO05D001832 6.3e-20 102.1 211 33.2
SGA_v2.0_scaffold8G04558 Striga asiatica HOM05D001312 ORTHO05D001832 6.3e-20 102.1 183 37.2
HanXRQChr12g0378141 Helianthus annuus HOM05D001312 ORTHO05D001832 2.4e-19 100.1 190 35.8
HPP92_012111 Vanilla planifolia HOM05D001312 ORTHO05D001832 1.6e-18 97.4 173 39.3
BraA10t44606Z Brassica rapa HOM05D001312 ORTHO05D001832 2.6e-18 96.7 204 32.4
C09p64490 Brassica napus HOM05D001312 ORTHO05D001832 4.5e-18 95.9 221 32.6
ATR0721G002 Amborella trichopoda HOM05D001312 ORTHO05D001832 7.7e-18 95.1 144 39.6
A10p25420 Brassica napus HOM05D001312 ORTHO05D001832 7.7e-18 95.1 212 33.0
PSO339G2353 Papaver somniferum HOM05D001312 ORTHO05D001832 2.2e-17 93.6 112 44.6
SEGI_08770 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 8.0e-15 85.1 139 36.0
PSO384G1094 Papaver somniferum HOM05D001312 ORTHO05D001832 5.2e-14 82.4 241 31.1
SEGI_18852 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.3e-12 77.8 106 37.7
Mapoly0044s0125 Marchantia polymorpha HOM05D001312 ORTHO05D001832 2.7e-10 70.1 99 38.4
Zm00001eb406520 Zea mays HOM05D001312 ORTHO05D001832 4.5e-10 69.3 73 46.6
Zm00001eb092810 Zea mays HOM05D001312 ORTHO05D001832 2.9e-09 66.6 149 36.2
ATR0820G030 Amborella trichopoda HOM05D001312 ORTHO05D001832 4.2e-08 62.8 67 40.3
BolC9t59283H Brassica oleracea HOM05D001312 ORTHO05D001832 4.2e-08 62.8 193 30.6
CDE06G0794 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 4.2e-08 62.8 95 33.7
Os11g0148700 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D001832 5.5e-08 62.4 153 34.6
Sabra04G0128400 Salix brachista HOM05D001312 ORTHO05D001832 5.5e-08 62.4 92 33.7
CAN.G644.40 Capsicum annuum HOM05D001312 ORTHO05D001832 7.2e-08 62.0 118 30.5
Lj1A305G17 Lonicera japonica HOM05D001312 ORTHO05D001832 7.2e-08 62.0 201 28.4
Os11g0148800 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D001832 1.6e-07 60.8 140 33.6
Potri.004G189600 Populus trichocarpa HOM05D001312 ORTHO05D001832 2.7e-07 60.1 92 32.6
Solyc11g066780.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 3.6e-07 59.7 98 29.6
Sopen11g026500 Solanum pennellii HOM05D001312 ORTHO05D001832 3.6e-07 59.7 98 29.6
Migut.N02359 Erythranthe guttata HOM05D001312 ORTHO05D001832 4.7e-07 59.3 175 33.7
Nitab4.5_0000442g0240 Nicotiana tabacum HOM05D001312 ORTHO05D001832 6.1e-07 58.9 55 40.0
Peaxi162Scf00789g00216 Petunia axillaris HOM05D001312 ORTHO05D001832 6.1e-07 58.9 116 30.2
Nitab4.5_0002571g0030 Nicotiana tabacum HOM05D001312 ORTHO05D001832 8.0e-07 58.5 98 29.6
Lsat_1_v5_gn_1_61921 Lactuca sativa HOM05D001312 ORTHO05D001832 1.4e-06 57.8 137 28.5
CSS0005615 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D001832 2.3e-06 57.0 111 33.3
Cc01_g09930 Coffea canephora HOM05D001312 ORTHO05D001832 2.3e-06 57.0 121 30.6
MSTRG.21070 Avicennia marina HOM05D001312 ORTHO05D001832 4.0e-06 56.2 119 30.3
HanXRQChr11g0346711 Helianthus annuus HOM05D001312 ORTHO05D001832 4.0e-06 56.2 159 30.2
CAN.G919.4 Capsicum annuum HOM05D001312 ORTHO05D001832 5.2e-06 55.8 73 37.0
Cpa.g.sc84.8 Carica papaya HOM05D001312 ORTHO05D001832 5.2e-06 55.8 121 35.5
CDE02G3010 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 5.2e-06 55.8 59 42.4
Cfa010099 Carpinus fangiana HOM05D001312 ORTHO05D001832 6.8e-06 55.5 110 29.1
Nn6g35082 Nelumbo nucifera HOM05D001312 ORTHO05D001832 8.8e-06 55.1 45 46.7
TAR623G0291 Trochodendron aralioides HOM05D001312 ORTHO05D001832 8.8e-06 55.1 60 38.3


User provided reference genes

Program Settings