Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 0.0e+00 1194.9 579 100.0
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 0.0e+00 1143.3 579 95.0
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 0.0e+00 1134.4 593 92.6
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 0.0e+00 1104.7 574 93.4
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 0.0e+00 1086.6 579 89.3
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 4.8e-311 1070.5 579 87.9
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 4.8e-311 1070.5 579 87.7
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.8e-308 1061.2 579 87.6
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 5.1e-294 1013.8 579 84.1
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 3.0e-286 988.0 561 83.1
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 3.9e-286 987.6 593 79.6
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 1.5e-285 985.7 569 83.1
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 5.7e-285 983.8 572 82.3
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 2.2e-284 981.9 570 81.9
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 4.8e-284 980.7 609 77.5
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 4.8e-284 980.7 578 80.1
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 6.3e-284 980.3 570 82.5
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 7.0e-283 976.9 579 81.2
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 6.5e-281 970.3 580 79.0
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 3.2e-280 968.0 570 79.8
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 6.1e-279 963.8 580 78.6
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.8e-278 962.2 558 81.2
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.3e-278 961.8 579 78.4
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 8.8e-278 959.9 579 78.2
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 8.8e-278 959.9 579 78.2
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.1e-277 959.5 548 83.4
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.7e-276 955.7 553 80.8
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.8e-276 954.9 567 79.0
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 6.3e-276 953.7 579 79.8
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 8.2e-276 953.4 561 79.5
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.1e-275 953.0 579 78.2
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 2.4e-275 951.8 579 77.9
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.4e-275 951.8 575 78.4
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 7.0e-275 950.3 566 79.7
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 7.7e-274 946.8 567 78.7
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 1.5e-272 942.6 563 79.8
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 3.2e-272 941.4 550 79.6
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 4.2e-272 941.0 567 77.2
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 5.5e-272 940.6 569 78.4
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 2.7e-271 938.3 553 79.0
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 6.8e-270 933.7 574 78.4
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 8.8e-270 933.3 567 76.7
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 2.6e-269 931.8 534 81.1
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 3.4e-269 931.4 550 80.7
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 7.5e-269 930.2 539 80.5
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 7.5e-269 930.2 574 76.8
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 9.7e-269 929.9 567 77.2
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 4.8e-268 927.5 559 79.1
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.1e-267 926.4 556 77.7
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 7.0e-267 923.7 599 73.6
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 5.9e-266 920.6 553 77.8
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 5.9e-266 920.6 559 77.1
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.9e-265 918.3 557 77.2
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.9e-265 918.3 558 77.6
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 6.5e-265 917.1 548 78.5
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 8.5e-265 916.8 557 77.2
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 1.9e-264 915.6 544 79.4
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 9.4e-264 913.3 563 76.4
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.2e-263 912.9 522 81.2
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 4.7e-263 911.0 553 77.9
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 4.0e-262 907.9 592 75.7
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 6.8e-262 907.1 566 74.6
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.2e-261 906.4 557 76.7
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 1.1e-259 899.8 553 76.7
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.1e-259 899.8 550 76.5
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.8e-259 899.0 544 77.6
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 7.0e-259 897.1 578 73.7
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.0e-258 895.6 562 75.4
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 5.0e-257 891.0 587 74.1
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 8.6e-257 890.2 551 74.0
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 1.5e-256 889.4 553 75.2
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.5e-256 889.4 560 75.5
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 9.5e-256 886.7 546 75.5
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.4e-254 882.9 550 75.1
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.3e-254 882.1 558 74.4
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 2.0e-253 879.0 551 73.3
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 3.4e-253 878.2 563 73.9
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 4.4e-253 877.9 546 74.9
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 7.5e-253 877.1 546 74.9
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.3e-252 876.3 552 73.7
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 4.9e-252 874.4 536 78.2
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.4e-251 872.8 556 73.6
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.8e-251 872.5 558 73.5
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.4e-251 872.1 545 74.9
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 5.4e-251 870.9 535 76.3
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.7e-250 868.6 555 73.7
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.7e-250 868.6 543 74.6
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 1.0e-249 866.7 517 78.1
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 2.9e-249 865.1 549 72.3
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 8.6e-249 863.6 534 75.8
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.5e-248 862.8 555 72.6
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 7.3e-248 860.5 533 75.8
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 9.5e-248 860.1 545 75.2
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 3.6e-247 858.2 564 72.5
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 4.7e-247 857.8 545 74.9
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 4.7e-247 857.8 545 75.0
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 4.7e-247 857.8 545 74.9
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 8.0e-247 857.1 564 72.3
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 8.0e-247 857.1 564 72.3
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 1.4e-246 856.3 564 72.2
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 1.8e-246 855.9 564 72.3
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 4.0e-246 854.7 552 73.4
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 5.2e-246 854.4 551 74.2
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 5.2e-246 854.4 549 72.7
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.9e-244 847.8 511 78.5
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 4.9e-244 847.8 567 71.1
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.7e-242 842.0 555 71.9
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 4.3e-240 834.7 572 70.1
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 7.3e-240 833.9 562 71.4
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.1e-238 828.6 518 75.5
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 5.2e-238 827.8 521 76.4
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 6.8e-238 827.4 544 73.3
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.7e-236 822.8 524 74.4
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 4.3e-232 808.1 495 77.0
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.1e-230 803.5 551 70.2
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.2e-229 800.0 560 69.1
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 9.9e-229 797.0 513 72.7
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 9.6e-224 780.4 537 70.9
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 3.8e-220 768.5 542 68.8
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 2.7e-218 762.3 568 65.5
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.0e-218 761.1 519 70.5
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.7e-217 759.6 558 65.9
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 9.3e-211 737.3 558 64.0
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.7e-202 709.1 482 71.0
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 3.2e-195 685.6 589 59.9
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 7.9e-194 681.0 564 61.7
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 5.7e-192 674.9 559 60.8
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 7.6e-189 664.5 583 57.6
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.4e-187 660.2 416 75.7
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.4e-144 516.2 331 72.8
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 9.8e-136 488.0 278 81.7
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 4.0e-129 466.1 266 84.6
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.2e-127 460.3 320 68.4
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 6.6e-124 448.7 347 62.8
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 5.2e-121 439.1 561 47.2
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 2.0e-120 437.2 336 65.8
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.1e-110 404.8 294 67.7
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.1e-102 378.3 217 73.7
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 1.3e-98 364.8 307 60.3
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.3e-97 359.4 205 82.0
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 3.6e-90 336.7 279 61.3
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.3e-79 301.6 251 61.0
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 2.5e-78 297.4 575 33.4
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 8.2e-74 282.3 198 69.2
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.1e-70 271.9 201 67.2
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.7e-63 248.1 145 72.4
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 8.8e-60 235.7 439 31.4
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 1.9e-54 218.0 138 77.5
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 1.2e-53 215.3 229 48.5
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.6e-48 198.4 130 70.8
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 6.1e-37 159.8 100 73.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.4e-33 148.7 177 49.2
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 5.0e-31 140.2 124 53.2
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.5e-30 138.7 103 58.3
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 4.0e-28 130.6 106 56.6
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 5.0e-23 113.6 121 50.4
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 9.5e-22 109.4 54 83.3
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 5.7e-19 100.1 79 58.2
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 6.6e-15 86.7 55 74.5
Psat3g196120 Pisum sativum HOM05D050106 ORTHO05D330155 1.8e-12 78.6 55 72.7
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 9.8e-11 72.8 43 76.7
Psat3g196080 Pisum sativum HOM05D050106 ORTHO05D328917 9.8e-11 72.8 55 69.1
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 3.9e-07 60.8 65 35.4
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 5.0e-07 60.5 70 35.7
Migut.D01577 Erythranthe guttata HOM05D000082 ORTHO05D000038 4.3e-06 57.4 67 34.3
Sopen03g041460 Solanum pennellii HOM05D000086 ORTHO05D008998 5.6e-06 57.0 71 36.6
COL.COLO4_10976 Corchorus olitorius HOM05D000082 ORTHO05D008126 7.3e-06 56.6 75 38.7
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 7.3e-06 56.6 56 37.5
Peaxi162Scf00038g02344 Petunia axillaris HOM05D000440 ORTHO05D008998 7.3e-06 56.6 91 33.0
unitig_748.g7202 Utricularia gibba HOM05D000086 ORTHO05D001065 7.3e-06 56.6 106 35.8
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 9.5e-06 56.2 62 40.3


User provided reference genes

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