Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 6.3e-137 490.7 240 100.0
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 6.4e-81 304.7 283 61.1
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 1.4e-80 303.5 283 61.1
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 1.9e-80 303.1 314 56.7
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 1.3e-78 297.0 314 56.4
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 1.1e-77 293.9 283 59.0
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 1.9e-77 293.1 314 54.1
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 9.5e-77 290.8 283 58.3
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 1.6e-76 290.0 283 58.0
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 6.2e-76 288.1 283 57.6
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 1.1e-75 287.3 283 57.6
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 9.8e-74 280.8 283 55.5
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 1.1e-72 277.3 283 55.1
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 9.2e-72 274.2 284 54.2
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.2e-72 274.2 263 57.4
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 1.6e-71 273.5 283 54.4
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 2.7e-71 272.7 283 54.1
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 3.5e-71 272.3 283 53.7
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 7.8e-71 271.2 283 54.4
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 1.3e-70 270.4 284 52.8
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 1.3e-70 270.4 284 52.8
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 2.3e-70 269.6 282 53.9
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 5.1e-70 268.5 283 54.1
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 8.6e-70 267.7 297 52.9
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 1.1e-69 267.3 285 53.3
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 1.1e-69 267.3 283 53.0
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 1.5e-69 266.9 283 52.7
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 2.5e-69 266.2 283 52.7
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.3e-69 265.4 283 53.4
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 5.6e-69 265.0 284 51.8
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 9.5e-69 264.2 283 52.7
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.6e-68 263.5 283 52.3
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.1e-68 263.1 283 52.7
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 2.8e-68 262.7 284 52.1
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 6.2e-68 261.5 283 51.9
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.1e-67 260.8 283 51.9
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 1.4e-67 260.4 312 49.7
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 3.1e-67 259.2 283 53.4
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 5.2e-67 258.5 297 50.2
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 5.2e-67 258.5 291 52.9
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 6.8e-67 258.1 284 52.1
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 6.8e-67 258.1 283 50.9
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 8.9e-67 257.7 281 51.6
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.5e-66 256.9 283 50.9
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 2.0e-66 256.5 283 50.5
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 2.6e-66 256.1 284 52.5
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 5.8e-66 255.0 283 50.9
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 5.8e-66 255.0 300 51.3
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 7.6e-66 254.6 277 50.9
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 1.3e-65 253.8 297 48.8
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.2e-65 253.1 256 55.5
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 2.2e-65 253.1 283 50.2
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 2.9e-65 252.7 285 49.8
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 3.8e-65 252.3 283 49.5
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 4.9e-65 251.9 283 49.8
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 8.4e-65 251.1 284 51.8
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.4e-64 250.4 283 49.8
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 4.1e-64 248.8 297 48.8
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 9.2e-64 247.7 283 49.5
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 1.2e-63 247.3 283 48.4
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 2.7e-63 246.1 283 47.7
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 2.7e-63 246.1 283 47.7
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 4.6e-63 245.4 282 48.6
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 6.0e-63 245.0 283 47.3
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 6.0e-63 245.0 283 47.3
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 7.8e-63 244.6 283 47.3
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 1.0e-62 244.2 284 50.0
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 1.7e-62 243.4 283 47.3
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 2.3e-62 243.0 283 47.0
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 2.3e-62 243.0 283 47.0
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.3e-62 243.0 443 37.5
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 3.0e-62 242.7 283 47.3
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 3.0e-62 242.7 286 49.3
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 3.0e-62 242.7 283 47.0
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 3.9e-62 242.3 284 49.6
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 3.9e-62 242.3 240 57.1
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 8.6e-62 241.1 300 46.3
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 5.6e-61 238.4 283 47.7
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 9.6e-61 237.7 324 45.7
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 2.1e-60 236.5 234 56.0
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 8.1e-60 234.6 305 47.9
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 3.1e-59 232.6 283 51.2
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 5.2e-59 231.9 258 52.7
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 5.2e-59 231.9 378 41.3
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 6.9e-59 231.5 284 47.5
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 1.2e-55 220.7 275 47.6
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.5e-53 213.0 266 47.7
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 2.8e-52 209.5 279 45.5
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 3.1e-51 206.1 283 45.2
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.0e-51 205.7 229 50.7
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 5.3e-51 205.3 283 45.6
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 9.0e-51 204.5 236 45.8
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 1.2e-50 204.1 136 76.5
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 7.6e-50 201.4 259 44.4
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 2.4e-48 196.4 296 38.2
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 5.4e-48 195.3 318 41.8
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 3.5e-47 192.6 311 40.5
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 4.3e-45 185.7 227 47.6
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 2.4e-43 179.9 185 51.9
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 5.3e-43 178.7 315 34.0
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.5e-42 177.2 231 47.6
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 2.0e-42 176.8 230 44.3
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 5.8e-42 175.3 216 42.6
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 5.5e-40 168.7 227 45.4
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 9.3e-40 167.9 217 40.6
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 3.3e-37 159.5 227 43.6
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 3.1e-35 152.9 290 35.9
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 6.9e-35 151.8 112 62.5
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.2e-34 151.0 83 86.7
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 2.6e-34 149.8 112 65.2
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.2e-26 124.4 200 42.0
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 1.0e-25 121.3 201 39.8
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 3.2e-24 116.3 112 47.3
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.2e-23 114.4 132 45.5
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 3.6e-23 112.8 112 47.3
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.5e-21 107.5 127 40.9
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 4.3e-21 105.9 58 86.2
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 1.7e-20 104.0 185 39.5
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 1.1e-19 101.3 118 49.2
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.4e-19 100.1 214 36.4
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 3.1e-19 99.8 116 50.0
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 3.4e-18 96.3 118 45.8
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 7.7e-18 95.1 56 76.8
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 7.7e-18 95.1 56 76.8
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 2.9e-17 93.2 119 51.3
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.4e-16 90.9 118 42.4
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.9e-16 90.5 53 73.6
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 2.7e-15 86.7 168 40.5
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.7e-15 86.7 49 77.6
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.7e-15 85.9 119 39.5
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 5.0e-09 65.9 105 40.0
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 8.0e-07 58.5 38 65.8
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 1.8e-06 57.4 39 74.4


User provided reference genes

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