Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_17847_v3 Cicer arietinum L. HOM05D005410 ORTHO05D007394 2.9e-41 171.4 83 100.0
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 1.2e-23 112.8 68 76.5
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 1.6e-23 112.5 68 76.5
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 2.7e-23 111.7 68 76.5
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 3.6e-23 111.3 68 75.0
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 1.4e-22 109.4 69 69.6
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 1.4e-22 109.4 69 69.6
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 1.4e-22 109.4 69 69.6
Sc09g0000010 Simmondsia chinensis HOM05D005410 ORTHO05D007394 1.8e-22 109.0 68 70.6
arahy.Tifrunner.gnm1.ann1.63K8WX Arachis hypogaea HOM05D005410 ORTHO05D007394 2.3e-22 108.6 68 72.1
arahy.Tifrunner.gnm1.ann1.GYZC8Z Arachis hypogaea HOM05D005410 ORTHO05D007394 2.3e-22 108.6 68 72.1
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 2.3e-22 108.6 68 70.6
DCAR_023818 Daucus carota HOM05D005410 ORTHO05D007394 3.0e-22 108.2 75 68.0
Eucgr.J01758 Eucalyptus grandis HOM05D005410 ORTHO05D007394 3.0e-22 108.2 68 72.1
Hma1.2p1_0256F.1_g103360 Hydrangea macrophylla HOM05D005410 ORTHO05D007394 5.2e-22 107.5 68 70.6
Thecc.09G203200 Theobroma cacao HOM05D005410 ORTHO05D007394 5.2e-22 107.5 68 69.1
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 8.8e-22 106.7 68 72.1
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 1.1e-21 106.3 68 69.1
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 1.1e-21 106.3 68 70.6
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 1.5e-21 105.9 68 70.6
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 1.5e-21 105.9 68 70.6
Cpa.g.sc119.36 Carica papaya HOM05D005410 ORTHO05D007394 1.5e-21 105.9 68 67.6
Oeu060891.1 Olea europaea HOM05D005410 ORTHO05D007394 1.5e-21 105.9 68 67.6
GSVIVG01025488001 Vitis vinifera HOM05D005410 ORTHO05D007394 1.5e-21 105.9 68 69.1
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 2.0e-21 105.5 68 72.1
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 2.6e-21 105.1 68 67.6
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 2.6e-21 105.1 68 72.1
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 2.6e-21 105.1 68 69.1
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 2.6e-21 105.1 68 69.1
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 2.6e-21 105.1 69 71.0
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 2.6e-21 105.1 69 71.0
CiPaw.14G137400 Carya illinoinensis HOM05D005410 ORTHO05D007394 3.3e-21 104.8 68 70.6
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 3.3e-21 104.8 68 70.6
FvH4_3g45781 Fragaria vesca HOM05D005410 ORTHO05D007394 3.3e-21 104.8 68 69.1
FAN11G0543 Fragaria x ananassa HOM05D005410 ORTHO05D007394 3.3e-21 104.8 68 69.1
FAN11G0605 Fragaria x ananassa HOM05D005410 ORTHO05D007394 3.3e-21 104.8 68 69.1
FAN25G1403 Fragaria x ananassa HOM05D005410 ORTHO05D007394 3.3e-21 104.8 68 69.1
Potri.003G222200 Populus trichocarpa HOM05D005410 ORTHO05D007394 3.3e-21 104.8 68 69.1
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 3.3e-21 104.8 68 69.1
CANSAT11G0129 Cannabis sativa HOM05D005410 ORTHO05D007394 4.4e-21 104.4 68 72.1
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 4.4e-21 104.4 68 70.6
MELO3C014728.2 Cucumis melo HOM05D005410 ORTHO05D007394 4.4e-21 104.4 68 70.6
ECA233G0964 Erigeron canadensis HOM05D005410 ORTHO05D007394 4.4e-21 104.4 68 67.6
Manes.15G110100 Manihot esculenta HOM05D005410 ORTHO05D007394 4.4e-21 104.4 68 69.1
Oeu023974.1 Olea europaea HOM05D005410 ORTHO05D007394 4.4e-21 104.4 68 67.6
Oeu023977.1 Olea europaea HOM05D005410 ORTHO05D007394 4.4e-21 104.4 68 67.6
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 5.7e-21 104.0 68 69.1
CiPaw.13G177700 Carya illinoinensis HOM05D005410 ORTHO05D007394 7.5e-21 103.6 68 69.1
TAR623G0245 Trochodendron aralioides HOM05D005410 ORTHO05D007394 7.5e-21 103.6 75 65.3
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 9.7e-21 103.2 69 69.6
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 9.7e-21 103.2 69 69.6
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 9.7e-21 103.2 68 69.1
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 9.7e-21 103.2 68 69.1
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 1.3e-20 102.8 68 70.6
Dinv13479 Davidia involucrata HOM05D005410 ORTHO05D007394 1.3e-20 102.8 68 67.6
Nitab4.5_0000551g0050 Nicotiana tabacum HOM05D005410 ORTHO05D007394 1.3e-20 102.8 69 65.2
Nitab4.5_0006195g0040 Nicotiana tabacum HOM05D005410 ORTHO05D007394 1.3e-20 102.8 69 65.2
Sopen01g001540 Solanum pennellii HOM05D005410 ORTHO05D007394 1.3e-20 102.8 69 65.2
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 67.6
arahy.Tifrunner.gnm1.ann1.CQ6EI1 Arachis hypogaea HOM05D005410 ORTHO05D007394 1.7e-20 102.4 58 79.3
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 1.7e-20 102.4 67 70.1
BcaB02g10821 Brassica carinata HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 66.2
BcaC08g44199 Brassica carinata HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 66.2
A05p17460 Brassica napus HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 66.2
C06p16070 Brassica napus HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 66.2
BolC6t36806H Brassica oleracea HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 66.2
BraA05t20641Z Brassica rapa HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 66.2
Haze_22935 Corylus avellana HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 69.1
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 66.2
FAN16G2022 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 67.6
QL01p010651 Quercus lobata HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 66.2
Rhsim13G0233300 Rhododendron simsii HOM05D005410 ORTHO05D007394 1.7e-20 102.4 69 66.7
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 1.7e-20 102.4 68 67.6
CSS0020515 Camellia sinensis var. sinensis HOM05D005410 ORTHO05D007394 2.2e-20 102.1 68 67.6
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 2.2e-20 102.1 68 67.6
CAN.G1834.14 Capsicum annuum HOM05D005410 ORTHO05D007394 2.8e-20 101.7 69 65.2
AUR62032839 Chenopodium quinoa HOM05D005410 ORTHO05D007394 2.8e-20 101.7 69 62.3
Solyc01g005520.4 Solanum lycopersicum HOM05D005410 ORTHO05D007394 2.8e-20 101.7 69 65.2
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 2.8e-20 101.7 68 67.6
EL10Ac4g10389 Beta vulgaris HOM05D005410 ORTHO05D007394 3.7e-20 101.3 68 63.2
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 3.7e-20 101.3 69 65.2
vmacro17045 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 3.7e-20 101.3 69 65.2
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 6.3e-20 100.5 69 60.9
SGA_v2.0_scaffold3G01679 Striga asiatica HOM05D005410 ORTHO05D007394 8.2e-20 100.1 68 66.2
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 1.1e-19 99.8 68 64.7
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 1.4e-19 99.4 68 64.7
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 1.4e-19 99.4 68 69.1
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 1.4e-19 99.4 68 64.7
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 1.8e-19 99.0 68 64.7
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 1.8e-19 99.0 68 67.6
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 2.4e-19 98.6 68 64.7
AL1G63500 Arabidopsis lyrata HOM05D005410 ORTHO05D007394 2.4e-19 98.6 68 66.2
MBI05_g04454_MAGBIO Magnolia biondii HOM05D005410 ORTHO05D007394 2.4e-19 98.6 61 73.8
Peaxi162Scf00036g00221 Petunia axillaris HOM05D005410 ORTHO05D007394 2.4e-19 98.6 64 68.8
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 3.1e-19 98.2 69 63.8
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 3.1e-19 98.2 68 64.7
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 4.1e-19 97.8 68 66.2
PSO339G0242 Papaver somniferum HOM05D005410 ORTHO05D007394 4.1e-19 97.8 68 63.2
PSO384G0864 Papaver somniferum HOM05D005410 ORTHO05D007394 4.1e-19 97.8 68 63.2
Sp1g41090 Schrenkiella parvula HOM05D005410 ORTHO05D007394 5.3e-19 97.4 68 63.2
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 7.0e-19 97.1 68 64.7
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 1.6e-18 95.9 68 63.2
EL10Ac8g20065 Beta vulgaris HOM05D005410 ORTHO05D007394 2.0e-18 95.5 68 58.8
HPP92_001905 Vanilla planifolia HOM05D005410 ORTHO05D007394 2.7e-18 95.1 68 64.7
Ah.06g190610 Amaranthus hybridus HOM05D005410 ORTHO05D007394 3.5e-18 94.7 69 60.9
unitig_0.g1148 Utricularia gibba HOM05D005410 ORTHO05D007394 5.9e-18 94.0 69 63.8
SEGI_35670 Sequoiadendron giganteum HOM05D005410 ORTHO05D007394 1.0e-17 93.2 69 62.3
Hund13622 Selenicereus undatus HOM05D005410 ORTHO05D007394 2.2e-17 92.0 68 57.4
vmacro04262 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 2.2e-17 92.0 60 66.7
Os07g0171100 Oryza sativa ssp. japonica HOM05D005410 ORTHO05D007394 2.9e-17 91.7 68 60.3
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 5.0e-17 90.9 60 65.0
Zm00001eb300990 Zea mays HOM05D005410 ORTHO05D007394 5.0e-17 90.9 68 60.3
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 1.9e-16 89.0 69 60.9
Psat7g064520 Pisum sativum HOM05D005410 ORTHO05D007394 5.2e-14 80.9 44 86.4
Mapoly0020s0152 Marchantia polymorpha HOM05D005410 ORTHO05D007394 9.8e-13 76.6 69 52.2
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 9.8e-13 76.6 69 52.2
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 9.8e-13 76.6 69 52.2
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 3.1e-11 71.6 67 50.7
Pp3c22_13930 Physcomitrium patens HOM05D005410 ORTHO05D007394 5.4e-11 70.9 64 50.0
AagrBONN_evm.TU.Sc2ySwM_117.774 Anthoceros agrestis HOM05D005410 ORTHO05D007394 1.0e-09 66.6 67 50.7
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 2.7e-07 58.5 65 41.5
Potri.001G002700 Populus trichocarpa HOM05D005410 ORTHO05D007394 6.8e-06 53.9 55 49.1


User provided reference genes

Program Settings