Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 0.0e+00 1172.5 604 100.0
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 0.0e+00 1128.6 604 95.7
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 0.0e+00 1128.2 604 95.7
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 0.0e+00 1127.9 604 95.7
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 0.0e+00 1091.3 604 91.4
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 4.1e-312 1073.9 604 90.7
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 2.4e-310 1068.1 604 89.6
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.5e-309 1064.3 604 89.2
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.5e-307 1058.1 595 90.1
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 7.5e-288 993.4 601 84.5
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 6.3e-287 990.3 598 84.6
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 2.4e-286 988.4 562 89.7
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 7.3e-275 950.3 603 80.1
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 8.0e-274 946.8 604 78.8
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.8e-273 945.7 595 79.7
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.2e-272 943.0 594 79.3
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.5e-272 942.6 603 78.3
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 2.2e-271 938.7 603 79.1
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 4.9e-271 937.6 611 78.2
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 4.9e-271 937.6 584 81.2
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 4.9e-271 937.6 603 78.4
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.1e-270 936.4 605 78.3
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.4e-270 936.0 627 76.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.0e-269 932.2 622 76.8
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.7e-268 929.1 603 77.4
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 3.0e-268 928.3 606 77.9
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.1e-267 926.4 603 76.9
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.9e-267 925.6 604 77.2
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.5e-267 925.2 604 77.6
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-266 922.9 595 77.6
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 2.1e-266 922.2 603 76.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 2.1e-266 922.2 606 77.4
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 4.7e-266 921.0 603 77.1
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 8.9e-265 916.8 603 76.9
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.5e-264 916.0 601 76.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 4.4e-264 914.4 603 76.5
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 5.8e-264 914.1 603 75.8
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 9.9e-264 913.3 603 76.9
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.7e-263 912.5 603 75.5
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.9e-263 911.8 603 77.8
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.4e-262 909.4 604 75.7
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.4e-262 909.4 604 76.2
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.9e-262 909.1 570 80.0
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 9.2e-262 906.7 601 75.7
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 7.8e-261 903.7 604 76.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 3.0e-260 901.7 603 74.6
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 2.5e-259 898.7 603 74.0
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 4.3e-259 897.9 599 75.8
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 4.3e-259 897.9 602 75.6
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 4.3e-259 897.9 651 71.0
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 5.6e-259 897.5 599 75.3
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 5.6e-259 897.5 601 74.7
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 7.3e-259 897.1 604 75.3
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.2e-258 896.3 604 74.5
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.2e-258 896.3 601 74.9
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.2e-258 896.3 616 73.7
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.2e-258 896.3 599 75.6
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 2.8e-258 895.2 606 75.1
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 4.7e-258 894.4 597 74.5
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 6.2e-258 894.0 599 75.5
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.4e-257 892.9 607 74.6
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.1e-257 891.7 607 75.0
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.1e-257 891.7 592 75.0
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 6.8e-257 890.6 603 73.8
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 6.8e-257 890.6 603 73.8
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.8e-257 890.6 606 74.9
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 8.9e-257 890.2 603 74.1
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 8.9e-257 890.2 607 74.5
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 2.6e-256 888.6 606 74.9
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 2.6e-256 888.6 593 75.0
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 2.6e-256 888.6 599 75.6
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.6e-256 888.6 606 74.9
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 4.4e-256 887.9 606 74.6
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 9.9e-256 886.7 603 73.6
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 9.9e-256 886.7 603 73.6
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 9.9e-256 886.7 603 73.6
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 4.9e-255 884.4 592 74.8
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.1e-254 883.2 602 74.1
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.1e-254 883.2 601 75.4
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.9e-254 882.5 598 74.9
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 5.4e-254 880.9 603 74.3
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 7.1e-254 880.6 604 74.0
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.6e-253 879.4 619 73.5
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 6.0e-253 877.5 599 74.0
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.7e-252 875.9 599 75.1
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 3.9e-252 874.8 603 73.6
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 6.6e-252 874.0 604 73.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-251 872.8 684 67.3
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.5e-251 872.8 622 71.5
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 7.3e-251 870.5 609 73.1
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 5.2e-249 864.4 660 68.2
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.2e-248 863.2 601 73.2
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 4.9e-247 857.8 624 70.7
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 4.9e-247 857.8 560 77.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.2e-246 855.1 603 73.6
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.9e-243 845.9 605 71.2
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 3.6e-242 841.6 603 69.7
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 3.6e-242 841.6 605 70.9
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.7e-239 832.8 544 76.7
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.3e-238 827.0 566 74.9
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.6e-237 826.2 600 72.2
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.6e-237 826.2 592 72.3
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 3.5e-237 825.1 550 75.1
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.3e-235 818.5 592 71.5
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 6.2e-234 814.3 605 70.6
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 2.9e-231 805.4 614 68.4
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.5e-222 775.8 605 67.4
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.9e-219 766.1 645 63.4
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.0e-216 756.1 469 79.3
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 5.0e-215 751.5 478 78.9
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 8.5e-215 750.7 604 64.2
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 2.5e-214 749.2 601 62.9
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 4.6e-213 745.0 658 59.7
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.9e-211 739.6 602 63.6
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.8e-210 734.9 496 74.0
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.8e-210 734.9 499 75.2
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.5e-199 697.6 551 67.2
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 3.1e-193 679.1 427 78.2
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 2.8e-178 629.4 443 73.4
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.5e-176 622.5 496 65.5
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.4e-171 605.9 584 53.3
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 5.0e-167 592.0 595 51.3
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 8.6e-167 591.3 582 52.1
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 2.7e-152 543.1 441 63.0
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 3.6e-149 532.7 336 81.0
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.6e-141 506.1 369 71.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.4e-137 493.4 603 45.6
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 3.0e-135 486.5 418 60.8
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 4.3e-134 482.6 573 45.5
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.3e-127 460.3 288 80.9
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.3e-125 454.5 532 50.4
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.6e-117 427.6 337 66.8
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.1e-113 414.8 248 80.6
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.4e-105 387.9 439 49.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.1e-104 384.0 279 71.3
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.2e-91 341.7 318 57.9
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.1e-84 317.0 276 59.8
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 2.2e-77 294.3 671 32.6
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 8.0e-72 275.8 556 35.4
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.5e-70 271.6 181 75.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 7.7e-67 259.2 153 81.7
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.7e-58 231.5 155 74.8
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 4.2e-57 226.9 154 74.7
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.9e-44 184.9 102 87.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.1e-44 183.7 107 84.1
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.0e-43 181.4 633 26.7
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.3e-31 141.4 96 70.8
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.2e-30 139.0 120 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 5.4e-28 130.2 187 40.1
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.7e-26 125.2 100 65.0
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.9e-25 121.7 100 62.0
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.2e-21 108.2 66 75.8
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 1.1e-20 105.9 75 70.7
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 4.2e-20 104.0 641 24.0
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 7.8e-19 99.8 79 57.0
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.9e-17 95.1 72 59.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 6.9e-15 86.7 49 83.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 3.4e-14 84.3 48 83.3
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 3.4e-14 84.3 72 51.4
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.1e-12 79.3 53 77.4
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 3.2e-12 77.8 53 75.5
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 1.2e-11 75.9 61 65.6
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.6e-11 75.5 99 45.5
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 5.1e-10 70.5 194 26.8
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 3.6e-08 64.3 54 61.1
Os08g0323266 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D026010 4.5e-06 57.4 46 63.0


User provided reference genes

Program Settings