Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 8.4e-171 603.6 303 100.0
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 9.4e-130 467.2 317 80.1
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 7.7e-124 447.6 306 79.4
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 1.6e-113 413.3 304 74.3
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 2.1e-113 412.9 307 73.6
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 8.0e-113 411.0 307 73.6
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 6.7e-112 407.9 304 74.3
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 4.1e-109 398.7 303 71.9
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 5.3e-109 398.3 303 71.9
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 2.7e-105 386.0 305 70.5
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 6.3e-102 374.8 304 67.1
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 8.3e-102 374.4 279 72.8
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.5e-98 363.6 338 59.2
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.2e-97 360.5 248 75.0
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 4.7e-97 358.6 254 72.8
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.0e-96 357.5 307 64.8
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.8e-96 356.7 280 68.6
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 3.0e-96 355.9 242 74.8
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.0e-96 355.9 298 65.1
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 4.0e-96 355.5 270 68.9
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 5.2e-96 355.1 259 72.2
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 1.5e-95 353.6 252 72.6
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.0e-95 353.2 298 64.1
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 4.4e-95 352.1 243 73.3
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 4.4e-95 352.1 241 73.4
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 5.7e-95 351.7 273 68.1
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 5.7e-95 351.7 243 72.8
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.3e-94 350.5 305 61.6
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 2.2e-94 349.7 265 69.8
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.4e-93 347.1 263 68.1
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 1.4e-93 347.1 279 67.7
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.2e-92 344.0 303 61.4
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 1.6e-92 343.6 242 71.1
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.7e-92 342.8 237 73.0
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 3.5e-92 342.4 281 66.2
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 4.5e-92 342.0 243 71.2
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 4.5e-92 342.0 268 67.2
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 7.8e-92 341.3 238 71.0
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 2.9e-91 339.3 259 68.0
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 3.3e-90 335.9 247 69.6
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 5.6e-90 335.1 257 66.5
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 5.6e-90 335.1 244 70.1
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 7.3e-90 334.7 294 61.9
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 9.5e-90 334.3 243 70.4
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 2.8e-89 332.8 297 60.6
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.8e-89 332.8 239 72.4
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 6.1e-89 331.6 297 60.3
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 6.1e-89 331.6 250 67.6
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.0e-88 330.9 249 66.7
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.4e-88 330.5 306 57.8
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.8e-88 330.1 235 71.1
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.8e-88 330.1 242 70.2
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 2.3e-88 329.7 229 71.2
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 2.3e-88 329.7 239 71.1
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.3e-88 329.7 239 70.7
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 3.0e-88 329.3 243 69.5
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 3.0e-88 329.3 239 70.3
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.0e-88 329.3 239 70.7
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 4.0e-88 328.9 296 62.5
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 4.0e-88 328.9 239 72.0
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 5.2e-88 328.6 307 58.6
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.8e-88 328.2 231 71.9
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 1.2e-87 327.4 250 67.6
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 2.0e-87 326.6 279 62.4
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 2.6e-87 326.2 280 63.2
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 2.6e-87 326.2 251 67.3
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 4.4e-87 325.5 289 60.2
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 5.7e-87 325.1 268 62.3
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 1.3e-86 323.9 236 69.9
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 2.2e-86 323.2 268 62.3
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 2.4e-85 319.7 243 68.3
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 3.2e-85 319.3 238 72.3
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 9.2e-85 317.8 290 60.7
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 9.2e-85 317.8 232 69.0
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 9.2e-85 317.8 245 67.8
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.2e-84 317.4 243 67.5
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.6e-84 317.0 246 67.9
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 5.9e-84 315.1 299 59.2
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 7.8e-84 314.7 250 67.6
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 7.8e-84 314.7 273 60.4
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.3e-83 313.9 292 57.5
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.7e-83 313.5 229 67.2
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 3.0e-83 312.8 238 66.4
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.9e-83 312.4 235 68.1
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 3.9e-83 312.4 238 65.1
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.9e-82 310.1 233 67.4
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 7.3e-82 308.1 306 56.5
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 1.2e-81 307.4 290 58.3
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 8.9e-80 301.2 232 66.4
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 8.9e-80 301.2 275 59.3
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 2.0e-79 300.1 242 64.9
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.3e-78 297.4 236 62.3
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 8.3e-78 294.7 281 58.0
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.1e-77 294.3 281 58.0
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.2e-77 292.7 230 66.5
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 5.4e-77 292.0 217 71.0
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 9.5e-74 281.2 309 53.4
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 2.3e-72 276.6 234 62.0
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 3.1e-72 276.2 258 60.5
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 3.1e-72 276.2 258 57.4
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 4.1e-69 265.8 267 54.7
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.7e-68 263.1 212 64.2
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 6.8e-64 248.4 231 58.4
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 8.9e-64 248.1 231 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 6.4e-62 241.9 223 57.0
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 1.9e-61 240.4 198 62.6
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 2.4e-61 240.0 234 52.6
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 9.2e-61 238.0 204 62.3
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 9.2e-61 238.0 204 62.3
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.5e-60 236.1 221 55.7
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.0e-59 234.6 221 53.8
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 6.6e-59 231.9 228 55.3
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 5.6e-58 228.8 169 69.8
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.6e-57 227.3 217 53.5
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 8.1e-57 224.9 196 63.3
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.1e-53 214.5 219 54.8
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.9e-53 213.8 207 56.0
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 7.8e-52 208.4 163 68.7
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 1.9e-50 203.8 185 60.5
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.8e-49 199.9 151 68.2
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.4e-46 188.7 173 60.1
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 7.4e-34 148.7 249 41.0
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 8.2e-33 145.2 227 38.8
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.0e-32 141.7 123 64.2
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-27 127.9 106 60.4
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.9e-26 124.0 192 44.3
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 7.4e-26 122.1 240 29.6
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 8.5e-22 108.6 65 81.5
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 3.0e-19 100.1 66 68.2
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.2e-14 84.0 87 51.7
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 3.6e-12 76.6 48 75.0
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 3.6e-12 76.6 46 78.3
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 1.7e-09 67.8 82 52.4
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 1.8e-08 64.3 78 51.3
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.2e-07 61.6 37 78.4
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.2e-07 61.6 50 56.0
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 1.7e-06 57.8 49 59.2
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 3.8e-06 56.6 71 50.7
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 8.5e-06 55.5 46 63.0


User provided reference genes

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