Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 0.0e+00 1145.6 590 100.0
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 4.1e-291 1004.2 616 85.2
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 3.6e-279 964.5 615 83.7
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 3.6e-279 964.5 625 81.6
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 2.2e-260 902.1 613 79.1
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 2.5e-259 898.7 613 78.6
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.6e-250 869.4 592 78.9
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 1.1e-246 856.7 623 75.4
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.0e-244 850.1 651 70.7
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.8e-241 839.3 628 73.1
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 5.2e-225 784.6 624 70.4
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.8e-222 776.2 497 80.9
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.2e-218 763.5 597 69.2
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 8.8e-217 757.3 617 68.2
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.5e-216 756.5 620 68.9
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 4.4e-216 755.0 616 67.0
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.7e-215 753.1 616 67.0
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 2.2e-215 752.7 617 68.1
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 4.5e-213 745.0 512 76.2
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 7.7e-213 744.2 627 66.5
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 1.7e-212 743.0 619 66.7
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 7.2e-211 737.6 627 65.9
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 7.2e-211 737.6 596 67.8
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 9.5e-211 737.3 625 65.6
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.6e-210 735.3 617 65.6
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 3.6e-210 735.3 621 66.5
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 4.0e-209 731.9 638 65.4
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 5.7e-208 728.0 627 64.9
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 2.2e-207 726.1 605 66.3
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 2.2e-207 726.1 630 64.4
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 2.8e-207 725.7 628 65.9
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 6.3e-207 724.5 627 64.8
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.6e-205 719.9 615 65.4
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 2.0e-205 719.5 616 63.8
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 3.5e-205 718.8 619 64.9
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-204 716.8 626 64.4
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 3.8e-204 715.3 617 65.6
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 4.0e-201 705.3 533 71.1
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 2.6e-200 702.6 615 62.6
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 5.7e-200 701.4 619 64.1
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.3e-199 700.3 637 64.2
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 8.3e-199 697.6 619 63.0
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-198 697.2 656 61.3
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 9.2e-198 694.1 616 63.8
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 5.0e-196 688.3 616 62.7
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.5e-195 686.8 626 62.1
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 2.5e-195 686.0 587 65.4
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.2e-194 683.7 602 64.1
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.2e-194 683.7 624 62.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 8.0e-194 681.0 613 62.2
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.8e-193 679.9 615 62.9
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 5.2e-193 678.3 607 63.3
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.5e-192 676.8 600 62.5
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.3e-191 673.7 657 59.4
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 6.4e-191 671.4 610 62.8
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 8.3e-191 671.0 618 62.5
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.1e-190 670.6 620 61.6
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 9.2e-190 667.5 639 60.4
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 9.2e-190 667.5 618 61.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 2.7e-189 666.0 612 61.6
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.3e-188 663.7 628 61.0
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.9e-188 662.1 622 60.8
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.1e-187 660.6 597 63.7
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 7.3e-187 657.9 618 60.7
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 7.3e-187 657.9 619 60.7
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.6e-186 656.8 619 60.3
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 4.7e-186 655.2 614 59.3
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.4e-185 653.7 613 59.5
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.8e-185 653.3 626 60.1
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.1e-185 652.5 622 60.1
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 3.4e-184 649.0 613 59.2
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 3.4e-184 649.0 613 59.1
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.4e-182 643.7 616 58.6
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.9e-182 643.3 530 66.8
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 6.0e-181 638.3 606 59.4
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-180 637.5 625 58.4
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-180 637.5 622 58.0
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.9e-180 635.6 625 58.2
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-179 634.0 625 57.9
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 2.5e-179 632.9 685 55.0
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 5.6e-179 631.7 619 59.1
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 5.2e-177 625.2 624 57.7
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 4.4e-176 622.1 629 58.2
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.4e-175 618.2 655 56.3
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 3.2e-174 615.9 615 57.2
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 3.2e-174 615.9 625 57.1
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.6e-173 613.6 549 62.5
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.5e-171 607.1 636 56.0
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.1e-170 603.2 542 61.8
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.5e-168 597.0 543 61.1
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.5e-168 597.0 629 56.8
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.3e-167 594.0 565 61.1
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 4.9e-167 592.0 540 61.9
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 5.4e-166 588.6 527 62.2
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 7.1e-166 588.2 632 55.9
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 7.1e-166 588.2 626 56.2
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.7e-164 583.6 588 57.8
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.2e-160 570.9 623 54.6
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 7.1e-158 561.6 617 53.8
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 9.6e-155 551.2 618 54.7
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 1.1e-153 547.7 539 56.8
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 2.6e-152 543.1 628 53.2
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 1.2e-149 534.3 586 54.4
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 3.7e-146 522.7 626 51.6
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 5.7e-139 498.8 381 68.2
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.8e-138 496.5 413 63.9
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.2e-134 483.0 617 49.9
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.9e-132 476.1 339 73.2
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 1.3e-127 461.1 506 53.6
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 1.9e-126 457.2 519 52.4
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 4.2e-126 456.1 340 71.2
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.5e-126 455.7 504 55.0
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.5e-123 447.6 337 69.4
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.9e-121 438.7 319 70.8
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.9e-119 433.3 611 45.3
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 5.5e-110 402.5 401 58.9
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 4.1e-97 359.8 373 53.6
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 5.9e-88 329.3 662 37.0
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 5.9e-88 329.3 367 54.2
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.0e-80 304.3 274 61.3
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.6e-80 303.1 294 62.2
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 2.5e-78 297.4 229 66.4
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 8.0e-77 292.4 269 61.3
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 4.0e-76 290.0 342 49.1
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 1.5e-70 271.6 535 36.8
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.9e-70 271.2 196 73.0
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.4e-67 260.4 325 50.8
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 7.8e-64 249.2 686 32.7
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 1.2e-61 241.9 274 55.8
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.2e-61 239.6 241 56.0
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.9e-57 228.0 274 52.6
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 1.0e-55 222.2 226 51.8
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 1.3e-55 221.9 720 29.9
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.7e-55 221.5 279 49.8
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.6e-55 219.5 251 55.0
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 6.2e-53 213.0 274 49.6
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 5.2e-52 209.9 126 84.1
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 4.9e-50 203.4 271 48.0
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-49 202.2 232 50.0
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.2e-48 198.7 339 42.2
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.2e-40 172.2 287 41.8
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 6.0e-40 169.9 121 77.7
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 6.7e-39 166.4 297 38.4
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.4e-35 154.1 372 33.6
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 7.6e-35 152.9 98 74.5
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.2e-33 147.5 207 51.2
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.1e-33 146.4 194 47.9
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 2.7e-32 144.4 103 72.8
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.0e-31 141.0 214 41.1
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 3.9e-31 140.6 277 39.4
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 8.7e-31 139.4 265 37.0
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.5e-30 138.7 110 69.1
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.3e-30 137.5 166 53.0
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 1.9e-25 121.7 114 59.6
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.0e-23 115.9 151 51.7
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 1.8e-23 115.2 379 30.1
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.8e-23 115.2 146 45.9
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 3.0e-23 114.4 153 41.8
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 8.7e-23 112.8 110 56.4
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.8e-21 107.1 145 50.3
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 3.4e-19 100.9 128 48.4
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 5.9e-19 100.1 77 64.9
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 5.9e-19 100.1 52 98.1
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.7e-18 98.6 51 98.0
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 1.4e-17 95.5 52 94.2
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 7.2e-17 93.2 122 54.1
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.2e-16 92.4 158 44.9
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 2.8e-13 81.3 252 28.6
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 8.5e-10 69.7 50 66.0
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 2.1e-08 65.1 122 34.4
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 1.0e-07 62.8 47 66.0
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.4e-07 62.4 39 69.2
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 3.9e-07 60.8 38 89.5
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 1.1e-06 59.3 38 86.8
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 3.3e-06 57.8 93 41.9


User provided reference genes

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