Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 0.0e+00 1258.4 693 100.0
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 9.8e-308 1059.7 710 85.1
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 9.8e-292 1006.5 693 83.7
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 6.6e-288 993.8 701 81.2
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.7e-273 945.3 697 78.6
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.3e-272 943.0 695 79.6
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.9e-267 925.2 697 77.2
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 5.1e-264 914.4 697 76.8
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 3.6e-254 881.7 727 72.5
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-247 860.1 703 72.4
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 7.4e-247 857.4 703 72.3
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.5e-244 849.7 699 71.0
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 4.4e-207 725.3 702 63.2
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 6.3e-206 721.5 703 57.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.1e-202 710.7 701 61.3
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 1.8e-200 703.4 704 62.1
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 2.8e-198 696.0 706 61.8
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-197 693.7 703 60.2
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.0e-196 689.9 701 59.3
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 3.5e-196 689.1 704 60.8
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 7.7e-196 688.0 703 60.5
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.2e-194 682.2 724 58.8
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.4e-192 677.2 704 59.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.8e-191 671.0 754 52.5
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.0e-188 663.3 709 55.7
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 3.5e-188 662.5 703 59.9
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.0e-187 661.0 703 57.0
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.5e-186 657.1 713 57.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 3.6e-185 652.5 703 58.9
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.4e-184 650.6 706 56.9
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.5e-183 647.1 700 57.1
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 2.4e-181 639.8 700 57.7
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 9.2e-181 637.9 710 56.3
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.2e-180 637.5 703 58.3
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 4.5e-180 635.6 702 57.4
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.8e-180 634.8 708 55.9
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.7e-179 633.6 706 56.8
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 6.6e-179 631.7 704 57.7
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.6e-179 631.3 703 57.6
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.1e-178 630.9 717 56.5
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.9e-178 630.2 707 57.0
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.3e-178 629.4 706 56.8
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.6e-177 627.1 706 57.1
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.6e-177 625.9 704 57.2
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.6e-177 625.9 706 56.1
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 8.0e-177 624.8 711 57.0
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.4e-176 624.0 704 57.0
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.7e-174 617.1 705 57.2
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.4e-173 613.2 705 56.6
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 7.0e-173 611.7 703 56.5
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.5e-172 609.4 770 45.7
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 5.6e-170 602.1 703 55.5
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 9.5e-170 601.3 705 48.2
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 6.2e-169 598.6 703 54.2
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.3e-166 590.9 704 55.3
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.9e-166 589.7 707 47.9
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 4.9e-166 589.0 703 53.3
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.4e-166 588.6 703 54.8
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.9e-165 587.0 741 53.3
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 3.2e-165 586.3 695 56.7
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.2e-164 584.3 703 54.8
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 3.5e-164 582.8 672 55.4
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 7.8e-164 581.6 691 55.1
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.3e-163 580.9 705 55.2
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 5.1e-163 578.9 696 55.2
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.1e-162 577.8 708 54.9
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.9e-162 577.0 693 54.7
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.9e-162 577.0 707 47.9
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.5e-162 576.6 694 54.5
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 2.5e-162 576.6 694 55.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 3.3e-162 576.2 694 54.3
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 4.3e-162 575.9 699 54.6
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 5.6e-162 575.5 707 53.6
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.2e-161 574.3 708 52.1
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.2e-161 574.3 733 51.6
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 6.2e-161 572.0 633 59.1
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 1.4e-160 570.9 694 54.3
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 3.1e-160 569.7 694 54.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 5.2e-160 568.9 701 51.8
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 4.4e-159 565.8 697 54.4
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.9e-157 560.5 703 54.2
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.4e-157 560.1 705 53.6
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 7.1e-157 558.5 632 58.1
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 7.1e-157 558.5 702 53.1
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.2e-156 557.8 703 48.6
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.0e-155 554.7 694 54.2
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.5e-154 550.8 694 52.2
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 9.6e-154 548.1 692 53.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.2e-153 547.7 694 53.5
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 4.7e-153 545.8 694 52.0
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.8e-152 543.9 705 52.1
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.3e-147 526.9 709 50.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 8.7e-147 525.0 648 56.5
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.3e-146 523.1 703 44.1
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.6e-145 520.8 700 47.9
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.6e-145 520.8 698 50.6
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.1e-145 520.4 711 50.2
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 9.9e-143 511.5 354 73.4
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.1e-141 508.1 707 51.6
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.3e-139 501.1 636 53.9
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.9e-133 480.7 710 50.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 4.2e-133 479.6 701 50.1
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.1e-132 477.2 535 50.5
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.0e-127 460.7 567 55.6
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.5e-127 459.5 710 40.3
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 5.8e-127 459.1 696 40.1
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 3.0e-123 446.8 520 57.1
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 9.6e-122 441.8 719 40.9
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 6.9e-120 435.6 485 62.5
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.2e-119 434.9 720 42.2
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.0e-119 434.1 709 39.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 5.0e-118 429.5 694 39.5
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 3.5e-116 423.3 717 37.5
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.8e-115 421.0 629 51.4
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.9e-115 419.9 527 43.8
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-106 391.0 517 52.6
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 8.5e-102 375.6 524 53.2
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.3e-97 361.7 529 43.1
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 4.8e-97 359.8 533 41.8
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 1.3e-86 325.1 462 47.0
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 9.8e-82 308.9 720 41.2
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 3.5e-79 300.4 425 54.4
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 5.5e-77 293.1 278 72.7
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.6e-74 284.3 428 43.0
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.3e-73 279.6 313 49.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.2e-66 258.8 255 75.3
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-66 257.7 468 36.1
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.3e-65 252.7 490 33.7
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.6e-60 238.4 252 51.6
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.8e-60 237.7 152 78.3
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 5.4e-56 223.4 710 33.4
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 9.2e-48 196.1 273 41.0
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 5.6e-45 186.8 124 74.2
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 9.2e-40 169.5 189 47.6
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-39 169.1 124 68.5
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.0e-38 166.0 197 52.3
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.7e-38 165.2 136 61.8
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 3.3e-37 161.0 567 26.5
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 3.6e-36 157.5 509 27.5
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.6e-34 151.4 123 63.4
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 2.4e-32 144.8 143 51.0
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 7.1e-32 143.3 75 92.0
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 6.0e-31 140.2 134 57.5
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 8.7e-30 136.3 124 55.6
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.6e-28 132.1 216 35.2
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 2.1e-28 131.7 141 48.9
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.2e-26 125.9 109 59.6
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.1e-24 119.4 124 50.0
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 2.4e-24 118.2 115 54.8
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.2e-23 115.9 144 49.3
Lalb_Chr04g0252791 Lupinus albus HOM05D003682 ORTHO05D004224 1.6e-23 115.5 76 65.8
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.1e-23 115.2 122 50.8
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 9.6e-21 106.3 142 48.6
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-20 104.8 110 49.1
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-20 104.8 110 49.1
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.1e-20 103.2 98 58.2
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-19 101.7 110 47.3
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.0e-19 100.9 107 47.7
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.8e-17 94.4 110 44.5
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.4e-17 93.6 110 44.5
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 6.4e-17 93.6 256 30.9
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.1e-16 90.1 110 44.5
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.3e-16 89.7 96 52.1
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 2.7e-15 88.2 71 59.2
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.9e-15 86.7 110 43.6
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 8.7e-14 83.2 52 65.4
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.3e-13 80.9 65 66.2
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 4.3e-13 80.9 286 27.6
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 9.6e-13 79.7 114 49.1
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.6e-13 79.7 65 66.2
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-12 79.3 65 63.1
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-12 78.6 65 64.6
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-12 78.6 65 64.6
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 4.8e-12 77.4 125 37.6
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-11 76.3 65 63.1
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 5.8e-10 70.5 76 55.3
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 7.6e-10 70.1 259 27.4
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 1.7e-09 68.9 62 53.2
arahy.Tifrunner.gnm1.ann1.FQ0JYV Arachis hypogaea HOM05D028796 ORTHO05D004224 9.3e-08 63.2 149 33.6
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 4.6e-07 60.8 29 86.2
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 1.8e-06 58.9 54 51.9


User provided reference genes

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