Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 3.8e-158 562.8 312 100.0
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 3.8e-158 562.8 312 100.0
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 2.4e-136 490.3 316 89.2
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 3.7e-129 466.5 297 83.2
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 2.6e-122 443.7 298 82.2
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 2.9e-121 440.3 316 77.8
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 2.7e-119 433.7 315 74.6
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 2.3e-118 430.6 294 81.0
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.6e-116 424.5 293 80.2
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 2.1e-116 424.1 312 74.7
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.3e-110 404.8 303 73.3
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 8.6e-110 402.1 300 74.0
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 7.3e-109 399.1 300 73.7
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 1.3e-105 388.3 263 79.1
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 3.7e-105 386.7 261 79.3
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 4.6e-103 379.8 280 71.1
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 1.3e-102 378.3 270 74.4
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 2.3e-102 377.5 284 70.4
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 3.0e-102 377.1 312 65.7
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 3.0e-102 377.1 251 78.9
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 6.6e-102 375.9 252 74.6
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 1.5e-101 374.8 284 71.1
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.9e-101 374.4 256 76.2
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 3.3e-101 373.6 259 74.9
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 3.3e-101 373.6 259 74.9
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 1.2e-100 371.7 266 71.4
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 6.2e-100 369.4 257 74.7
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.8e-99 367.9 258 74.0
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 3.1e-99 367.1 258 73.3
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 4.0e-99 366.7 247 75.3
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 5.2e-99 366.3 258 73.6
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 2.6e-98 364.0 259 73.0
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 4.4e-98 363.2 257 74.3
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.2e-97 360.9 258 73.6
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 3.8e-97 360.1 263 74.1
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 3.8e-97 360.1 255 73.3
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.4e-96 358.2 259 73.4
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 7.1e-96 355.9 245 73.5
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 9.2e-96 355.5 259 71.4
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 1.3e-94 351.7 261 71.3
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 2.3e-94 350.9 251 72.9
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 3.0e-94 350.5 258 69.8
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 6.6e-94 349.4 256 70.7
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 6.6e-94 349.4 253 70.4
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 1.5e-93 348.2 259 68.0
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 1.5e-93 348.2 249 71.1
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 3.3e-93 347.1 240 75.4
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 5.6e-93 346.3 240 73.3
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 7.3e-93 345.9 247 74.9
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 7.3e-93 345.9 254 71.3
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 9.6e-93 345.5 256 69.1
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 9.6e-93 345.5 256 68.4
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 1.6e-92 344.7 259 69.5
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 2.8e-92 344.0 316 59.8
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 4.7e-92 343.2 258 69.0
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 4.7e-92 343.2 264 70.1
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 1.1e-91 342.0 258 69.4
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 1.4e-91 341.7 235 73.6
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 1.4e-91 341.7 256 67.6
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.8e-91 341.3 263 66.2
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 4.0e-91 340.1 263 66.2
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 5.2e-91 339.7 259 68.7
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 8.4e-89 332.4 258 65.1
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 1.9e-88 331.3 253 68.4
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 2.4e-88 330.9 312 56.7
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 3.2e-88 330.5 307 59.3
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 7.1e-88 329.3 256 66.4
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 9.3e-88 328.9 249 68.7
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 6.0e-87 326.2 256 65.6
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 7.8e-87 325.9 238 71.8
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 3.9e-86 323.6 259 64.5
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 1.9e-85 321.2 253 66.8
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 5.6e-85 319.7 242 69.0
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 7.3e-85 319.3 240 72.1
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 7.3e-85 319.3 242 69.0
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 1.6e-84 318.2 261 65.1
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 2.1e-84 317.8 247 66.4
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.1e-83 315.5 238 67.2
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 1.8e-83 314.7 246 67.5
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 1.2e-82 312.0 234 67.9
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 1.2e-82 312.0 243 66.3
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 4.5e-82 310.1 240 66.2
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 5.8e-82 309.7 254 62.6
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 2.2e-81 307.8 247 63.6
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 2.2e-81 307.8 247 63.6
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 4.9e-81 306.6 246 63.4
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 4.9e-81 306.6 246 63.4
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 4.9e-81 306.6 246 63.4
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 1.4e-80 305.1 237 66.2
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 1.9e-80 304.7 244 63.5
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 5.4e-80 303.1 299 56.2
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 3.5e-79 300.4 258 62.4
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 8.7e-78 295.8 260 61.9
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 1.9e-77 294.7 264 59.5
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 3.3e-77 293.9 261 60.5
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.1e-75 288.9 313 53.0
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 3.4e-74 283.9 244 63.1
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 9.3e-72 275.8 257 56.8
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 7.4e-69 266.2 171 78.9
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.2e-58 232.3 169 74.0
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 9.4e-56 222.6 166 65.1
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 8.5e-49 199.5 256 50.0
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 1.8e-43 181.8 259 41.3
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 2.1e-39 168.3 214 42.1
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 1.9e-32 145.2 185 44.9
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 2.5e-32 144.8 220 38.2
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 5.2e-30 137.1 257 36.6
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 5.0e-25 120.6 254 35.8
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 8.8e-22 109.8 172 35.5
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 2.0e-21 108.6 170 32.9
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 2.3e-17 95.1 75 62.7
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 1.1e-08 66.2 228 25.4
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.8e-07 61.6 35 80.0
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 2.8e-07 61.6 35 80.0
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 3.6e-07 61.2 88 34.1
AUR62038945 Chenopodium quinoa HOM05D002479 ORTHO05D002675 3.6e-07 61.2 88 34.1
CSS0050030 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 6.1e-07 60.5 191 22.0
CSS0032184 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 8.0e-07 60.1 191 22.0
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 8.0e-07 60.1 35 77.1
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 8.0e-07 60.1 35 77.1
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 1.0e-06 59.7 98 32.7
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.4e-06 59.3 35 77.1
Lj2A685T11 Lonicera japonica HOM05D005862 ORTHO05D007731 3.1e-06 58.2 173 26.6
Actinidia26891 Actinidia chinensis HOM05D000001 ORTHO05D009952 4.0e-06 57.8 111 29.7
Ca_23607_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 5.2e-06 57.4 165 26.7
Aa31LG11G14510 Aethionema arabicum HOM05D000424 ORTHO05D000355 8.9e-06 56.6 166 26.5
CBR_g20311 Chara braunii HOM05D007251 ORTHO05D009266 8.9e-06 56.6 208 25.5


User provided reference genes

Program Settings