Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 5.3e-153 545.8 781 100.0
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 2.0e-123 447.6 768 87.0
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 4.1e-121 439.9 769 94.4
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 1.7e-119 434.5 768 86.7
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 8.1e-117 425.6 769 90.8
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 9.5e-110 402.1 770 90.5
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 4.1e-105 386.7 768 90.5
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 3.9e-87 327.0 769 77.9
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 1.1e-86 325.5 769 86.6
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 5.8e-83 313.2 752 85.4
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 7.6e-83 312.8 752 77.0
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 1.9e-81 308.1 752 83.2
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 2.4e-81 307.8 759 84.6
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 3.2e-81 307.4 768 67.3
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 5.5e-81 306.6 753 79.3
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 3.5e-80 303.9 758 84.0
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 3.5e-80 303.9 194 75.8
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 4.6e-80 303.5 744 83.3
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 4.6e-80 303.5 747 84.9
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 6.0e-80 303.1 744 83.3
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 1.0e-79 302.4 758 74.7
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 2.3e-79 301.2 757 85.3
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 3.9e-79 300.4 758 83.6
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 9.6e-78 295.8 756 83.3
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 1.1e-76 292.4 747 81.1
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 1.4e-76 292.0 742 82.2
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 2.4e-76 291.2 753 83.7
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 3.4e-75 287.3 748 83.7
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 2.5e-73 281.2 171 74.9
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 2.5e-73 281.2 763 83.6
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 4.2e-73 280.4 741 77.5
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.1e-72 278.1 337 79.5
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.6e-72 276.9 175 73.1
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 6.0e-72 276.6 748 84.0
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 5.1e-71 273.5 748 84.1
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 6.7e-71 273.1 727 83.2
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 1.5e-70 271.9 763 67.8
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 1.3e-69 268.9 747 82.7
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 1.3e-69 268.9 759 82.6
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 2.1e-69 268.1 338 78.7
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 3.7e-69 267.3 741 76.2
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 9.0e-68 262.7 341 76.0
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.5e-67 261.9 744 82.1
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 1.5e-67 261.9 354 74.9
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 3.4e-67 260.8 188 66.0
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 3.4e-67 260.8 342 71.3
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 3.4e-67 260.8 342 71.9
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 3.4e-67 260.8 742 73.7
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 7.6e-67 259.6 165 72.7
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.3e-66 258.8 328 78.4
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 1.7e-66 258.5 739 82.3
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 2.2e-66 258.1 182 67.0
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 2.2e-66 258.1 751 69.5
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 3.8e-66 257.3 740 82.4
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 6.5e-66 256.5 177 68.4
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 4.2e-65 253.8 754 80.0
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 4.2e-65 253.8 337 76.9
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 7.2e-65 253.1 333 74.5
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 7.9e-64 249.6 171 70.2
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 7.9e-64 249.6 172 68.0
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 3.9e-63 247.3 324 77.5
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 8.7e-63 246.1 152 71.7
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 5.7e-62 243.4 338 76.0
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 9.7e-62 242.7 742 81.0
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.1e-60 239.2 334 75.1
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 2.4e-60 238.0 734 81.3
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 4.1e-60 237.3 159 68.6
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 6.9e-60 236.5 155 69.7
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 6.9e-60 236.5 165 66.7
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 9.1e-60 236.1 174 66.1
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 1.2e-59 235.7 739 78.8
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 2.0e-59 235.0 187 63.6
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 5.9e-59 233.4 170 65.9
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 2.9e-58 231.1 152 69.7
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 3.8e-58 230.7 155 72.3
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 6.5e-58 229.9 185 62.7
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 8.5e-58 229.6 152 69.1
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 2.5e-57 228.0 170 65.9
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 3.6e-56 224.2 161 68.3
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 2.3e-55 221.5 171 62.6
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 2.3e-55 221.5 171 62.6
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 5.1e-55 220.3 171 62.0
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 5.1e-55 220.3 353 68.3
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 6.7e-55 219.9 764 77.0
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 1.1e-54 219.2 171 61.4
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 1.5e-54 218.8 700 59.0
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 4.5e-51 207.2 170 55.9
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 7.7e-51 206.5 333 71.5
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 5.5e-49 200.3 99 100.0
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 2.1e-48 198.4 317 72.9
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 3.2e-41 174.5 544 37.1
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 2.7e-40 171.4 322 69.9
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 3.3e-38 164.5 130 59.2
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.8e-36 158.7 99 74.7
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 4.1e-36 157.5 630 89.2
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 6.5e-34 150.2 96 71.9
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 1.1e-33 149.4 126 54.0
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.2e-33 147.5 99 68.7
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.2e-32 146.0 739 73.5
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.7e-32 144.8 99 67.7
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.2e-30 139.4 150 47.3
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 2.2e-29 135.2 122 52.5
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 8.3e-29 133.3 75 80.0
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 5.4e-28 130.6 178 41.0
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 5.4e-28 130.6 99 58.6
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.6e-27 129.0 239 65.7
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 7.7e-27 126.7 99 57.6
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 1.0e-26 126.3 98 55.1
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 2.9e-26 124.8 99 55.6
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 2.5e-25 121.7 99 52.5
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 2.5e-25 121.7 96 56.2
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 4.7e-24 117.5 102 53.9
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 4.0e-23 114.4 98 53.1
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 5.2e-23 114.0 108 52.8
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 6.3e-21 107.1 97 49.5
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 5.4e-20 104.0 76 59.2
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.6e-19 102.4 67 70.1
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 6.1e-16 90.5 71 62.0
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 8.0e-16 90.1 95 46.3
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 7.5e-14 83.6 70 52.9
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 6.0e-11 73.9 67 50.7
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 3.9e-10 71.2 46 67.4
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 6.2e-08 63.9 102 32.4
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 1.2e-06 59.7 148 29.1
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 1.2e-06 59.7 98 29.6
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 2.6e-06 58.5 49 53.1
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 3.4e-06 58.2 109 33.0
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 4.4e-06 57.8 101 30.7
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 5.8e-06 57.4 101 31.7
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 7.5e-06 57.0 102 30.4


User provided reference genes

Program Settings