Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14436_v3 Cicer arietinum L. HOM05D002649 ORTHO05D002838 1.5e-107 392.9 204 100.0
Ca_11758_v3 Cicer arietinum L. HOM05D002649 ORTHO05D002838 2.1e-77 292.7 200 81.0
Ca_11756_v3 Cicer arietinum L. HOM05D002649 ORTHO05D002838 1.5e-75 286.6 200 77.5
Psat6g093520 Pisum sativum HOM05D002649 ORTHO05D002838 6.0e-48 194.9 204 61.3
TPR.G7614 Trifolium pratense HOM05D002649 ORTHO05D002838 1.9e-46 189.9 209 59.8
Lj1g0021341 Lotus japonicus HOM05D002649 ORTHO05D002838 2.5e-38 162.9 207 53.6
arahy.Tifrunner.gnm1.ann1.65M2C6 Arachis hypogaea HOM05D002649 ORTHO05D002838 5.9e-35 151.8 204 50.5
Glyma.10G000600 Glycine max HOM05D002649 ORTHO05D002838 4.2e-33 145.6 206 49.0
Lalb_Chr22g0357481 Lupinus albus HOM05D002649 ORTHO05D002838 9.4e-33 144.4 208 48.6
arahy.Tifrunner.gnm1.ann1.8RBA5F Arachis hypogaea HOM05D002649 ORTHO05D002838 2.1e-32 143.3 209 49.8
VMungo0720G0528 Vigna mungo HOM05D002649 ORTHO05D002838 7.9e-32 141.4 206 48.1
Phvul.007G280400 Phaseolus vulgaris HOM05D002649 ORTHO05D002838 1.0e-31 141.0 206 51.0
arahy.Tifrunner.gnm1.ann1.B4V8RG Arachis hypogaea HOM05D002649 ORTHO05D002838 1.7e-29 133.7 191 48.7
arahy.Tifrunner.gnm1.ann1.WN7Z3X Arachis hypogaea HOM05D002649 ORTHO05D002838 6.3e-29 131.7 203 45.8
Glyma.02G000600 Glycine max HOM05D002649 ORTHO05D002838 6.9e-28 128.3 206 46.6
Lalb_Chr14g0365771 Lupinus albus HOM05D002649 ORTHO05D002838 1.5e-27 127.1 211 46.0
VMungo0720G1113 Vigna mungo HOM05D002649 ORTHO05D002838 4.5e-27 125.6 206 47.1
arahy.Tifrunner.gnm1.ann1.01ACP3 Arachis hypogaea HOM05D002649 ORTHO05D002838 1.4e-25 120.6 185 46.5
Lalb_Chr18g0060251 Lupinus albus HOM05D002649 ORTHO05D002838 1.8e-23 113.6 208 43.8
Dinv12024 Davidia involucrata HOM05D002649 ORTHO05D002838 3.0e-23 112.8 223 40.8
Psat3g079200 Pisum sativum HOM05D002649 ORTHO05D002838 3.0e-23 112.8 212 42.5
QL07p011045 Quercus lobata HOM05D002649 ORTHO05D002838 2.0e-22 110.2 217 41.9
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 5.7e-22 108.6 223 39.9
Medtr7g089770 Medicago truncatula HOM05D002649 ORTHO05D002838 2.2e-21 106.7 214 40.7
Hma1.2p1_0866F.1_g230110 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 2.8e-21 106.3 215 38.1
Dinv05299 Davidia involucrata HOM05D002649 ORTHO05D002838 1.1e-20 104.4 219 39.7
CSS0023965 Camellia sinensis var. sinensis HOM05D002649 ORTHO05D002838 3.1e-20 102.8 220 38.2
TPR.G34635 Trifolium pratense HOM05D002649 ORTHO05D002838 4.1e-20 102.4 215 42.3
CiPaw.09G048400 Carya illinoinensis HOM05D002649 ORTHO05D002838 1.2e-19 100.9 214 40.7
Ca_08387_v3 Cicer arietinum L. HOM05D002649 ORTHO05D002838 1.2e-19 100.9 205 42.4
Haze_20234 Corylus avellana HOM05D002649 ORTHO05D002838 3.5e-19 99.4 219 37.9
FAN09G3502 Fragaria x ananassa HOM05D002649 ORTHO05D002838 4.5e-19 99.0 210 41.0
FvH4_6g25350 Fragaria vesca HOM05D002649 ORTHO05D002838 5.9e-19 98.6 215 39.5
Manes.09G004200 Manihot esculenta HOM05D002649 ORTHO05D002838 7.7e-19 98.2 212 37.3
RcHm_v2.0_Chr2g0125771 Rosa chinensis HOM05D002649 ORTHO05D002838 7.7e-19 98.2 215 37.2
Medtr1g050750 Medicago truncatula HOM05D002649 ORTHO05D002838 1.0e-18 97.8 136 53.7
CSS0012260 Camellia sinensis var. sinensis HOM05D002649 ORTHO05D002838 1.7e-18 97.1 219 38.8
Thecc.05G129000 Theobroma cacao HOM05D002649 ORTHO05D002838 1.7e-18 97.1 218 39.0
Atru.chr1.1414 Acer truncatum HOM05D002649 ORTHO05D002838 5.0e-18 95.5 210 39.0
Glyma.19G129900 Glycine max HOM05D002649 ORTHO05D002838 5.0e-18 95.5 207 39.1
Cfa019999 Carpinus fangiana HOM05D002649 ORTHO05D002838 6.5e-18 95.1 217 38.7
Duzib128G1639 Durio zibethinus HOM05D002649 ORTHO05D002838 6.5e-18 95.1 222 39.2
Gorai.002G225900 Gossypium raimondii HOM05D002649 ORTHO05D002838 6.5e-18 95.1 218 39.4
FAN02G2210 Fragaria x ananassa HOM05D002649 ORTHO05D002838 1.1e-17 94.4 215 38.6
Prupe.7G034000 Prunus persica HOM05D002649 ORTHO05D002838 1.1e-17 94.4 209 39.2
COL.COLO4_37452 Corchorus olitorius HOM05D002649 ORTHO05D002838 1.5e-17 94.0 156 45.5
Hma1.2p1_0866F.1_g230120 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 3.2e-17 92.8 153 41.8
Hma1.2p1_2429F.1_g322005 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 3.2e-17 92.8 153 41.8
Gohir.A01G192550 Gossypium hirsutum HOM05D002649 ORTHO05D002838 4.2e-17 92.4 218 39.4
Sabra06G0026700 Salix brachista HOM05D002649 ORTHO05D002838 4.2e-17 92.4 210 37.6
MD12G1096000 Malus domestica HOM05D002649 ORTHO05D002838 9.4e-17 91.3 220 35.9
Atru.chr1.1431 Acer truncatum HOM05D002649 ORTHO05D002838 1.6e-16 90.5 207 36.2
Actinidia17956 Actinidia chinensis HOM05D002649 ORTHO05D002838 1.6e-16 90.5 214 37.9
Lj2C400G16 Lonicera japonica HOM05D002649 ORTHO05D002838 1.6e-16 90.5 221 35.3
COL.COLO4_21467 Corchorus olitorius HOM05D002649 ORTHO05D002838 2.1e-16 90.1 156 42.9
Potri.006G039600 Populus trichocarpa HOM05D002649 ORTHO05D002838 2.1e-16 90.1 218 34.9
TAR636G0690 Trochodendron aralioides HOM05D002649 ORTHO05D002838 2.1e-16 90.1 211 36.5
Lj1g0025196 Lotus japonicus HOM05D002649 ORTHO05D002838 6.1e-16 88.6 208 38.5
Gohir.D01G177300 Gossypium hirsutum HOM05D002649 ORTHO05D002838 8.0e-16 88.2 157 43.3
Duzib093G1638 Durio zibethinus HOM05D002649 ORTHO05D002838 3.0e-15 86.3 219 35.2
THA.LOC104808221 Tarenaya hassleriana HOM05D002649 ORTHO05D002838 4.0e-15 85.9 147 40.8
Ciclev10011296m.g Citrus clementina HOM05D002649 ORTHO05D002838 5.2e-15 85.5 221 36.2
PGR031G3173 Punica granatum HOM05D002649 ORTHO05D002838 1.5e-14 84.0 214 36.0
TWI77G0773 Tripterygium wilfordii HOM05D002649 ORTHO05D002838 1.5e-14 84.0 218 34.4
TAR633G1656 Trochodendron aralioides HOM05D002649 ORTHO05D002838 2.6e-14 83.2 220 34.5
Psat4g102080 Pisum sativum HOM05D002649 ORTHO05D325330 4.4e-14 82.4 143 43.4
MD14G1090300 Malus domestica HOM05D002649 ORTHO05D002838 5.7e-14 82.0 215 34.0
Potri.016G036100 Populus trichocarpa HOM05D002649 ORTHO05D002838 7.5e-14 81.6 207 33.8
CsaV3_3G040100 Cucumis sativus L. HOM05D002649 ORTHO05D002838 9.7e-14 81.3 212 39.6
TWI74G0896 Tripterygium wilfordii HOM05D002649 ORTHO05D002838 9.7e-14 81.3 149 39.6
Cc06_g19490 Coffea canephora HOM05D002649 ORTHO05D002838 1.3e-13 80.9 176 36.9
Sed0008307 Sechium edule HOM05D002649 ORTHO05D002838 2.2e-13 80.1 220 36.8
Sabra16G0038200 Salix brachista HOM05D002649 ORTHO05D002838 3.7e-13 79.3 207 33.3
SabraUnG0002300 Salix brachista HOM05D002649 ORTHO05D002838 6.3e-13 78.6 193 36.3
GSVIVG01033642001 Vitis vinifera HOM05D002649 ORTHO05D002838 1.1e-12 77.8 218 33.9
TWI53G0353 Tripterygium wilfordii HOM05D002649 ORTHO05D002838 1.4e-12 77.4 151 38.4
VMungo1383G1419 Vigna mungo HOM05D002649 ORTHO05D026545 2.4e-12 76.6 207 31.9
HPP92_002485 Vanilla planifolia HOM05D002649 ORTHO05D002838 3.1e-12 76.3 226 33.6
Peaxi162Scf00076g00413 Petunia axillaris HOM05D002649 ORTHO05D002838 7.0e-12 75.1 176 35.2
Migut.K00140 Erythranthe guttata HOM05D002649 ORTHO05D002838 1.2e-11 74.3 211 31.3
BcaC08g45302 Brassica carinata HOM05D002649 ORTHO05D002838 2.0e-11 73.6 170 41.2
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 3.5e-11 72.8 167 41.3
TAR369G0504 Trochodendron aralioides HOM05D002649 ORTHO05D002838 4.5e-11 72.4 144 39.6
AL2G41230 Arabidopsis lyrata HOM05D002649 ORTHO05D002838 7.7e-11 71.6 157 40.8
A06p11540 Brassica napus HOM05D003006 ORTHO05D002838 7.7e-11 71.6 170 37.6
Manes.08G060500 Manihot esculenta HOM05D002649 ORTHO05D002838 1.0e-10 71.2 215 32.1
Nn2g14676 Nelumbo nucifera HOM05D002649 ORTHO05D002838 1.3e-10 70.9 161 39.1
THA.LOC104812489 Tarenaya hassleriana HOM05D002649 ORTHO05D002838 1.3e-10 70.9 149 37.6
CAN.G960.61 Capsicum annuum HOM05D002649 ORTHO05D002838 1.7e-10 70.5 212 34.4
MBI19_g24367_MAGBIO Magnolia biondii HOM05D002649 ORTHO05D002838 2.2e-10 70.1 223 33.2
Sed0023036 Sechium edule HOM05D002649 ORTHO05D002838 2.2e-10 70.1 205 36.6
MELO3C009752.2 Cucumis melo HOM05D002649 ORTHO05D002838 2.9e-10 69.7 206 35.9
CAN.G448.3 Capsicum annuum HOM05D002649 ORTHO05D002838 3.8e-10 69.3 219 30.1
MSTRG.26162 Avicennia marina HOM05D002649 ORTHO05D002838 5.0e-10 68.9 211 31.8
CARHR074220 Cardamine hirsuta HOM05D002649 ORTHO05D002838 5.0e-10 68.9 142 40.8
CsaV3_3G040120 Cucumis sativus L. HOM05D002649 ORTHO05D002838 5.0e-10 68.9 207 34.8
Eucgr.K01644 Eucalyptus grandis HOM05D002649 ORTHO05D002838 6.5e-10 68.6 215 32.6
Sed0005213 Sechium edule HOM05D002649 ORTHO05D002838 6.5e-10 68.6 162 37.0
Aqoxy2G00422 Aquilegia oxysepala HOM05D002649 ORTHO05D002838 8.5e-10 68.2 167 35.9
Dinv32006 Davidia involucrata HOM05D002649 ORTHO05D002838 8.5e-10 68.2 149 35.6
HPP92_012951 Vanilla planifolia HOM05D002649 ORTHO05D002838 8.5e-10 68.2 140 42.1
AT1G80270 Arabidopsis thaliana HOM05D002649 ORTHO05D002838 1.1e-09 67.8 144 41.0
CANSAT80G1279 Cannabis sativa HOM05D002649 ORTHO05D002838 1.1e-09 67.8 211 33.6
ECA247G0229 Erigeron canadensis HOM05D002649 ORTHO05D002838 1.1e-09 67.8 73 47.9
Migut.K00139 Erythranthe guttata HOM05D002649 ORTHO05D002838 1.1e-09 67.8 217 30.9
ClCG10G016260 Citrullus lanatus HOM05D002649 ORTHO05D002838 1.5e-09 67.4 149 38.9
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 1.9e-09 67.0 164 33.5
MBI13_g09220_MAGBIO Magnolia biondii HOM05D002649 ORTHO05D002838 4.2e-09 65.9 140 37.9
Sabra16G0038500 Salix brachista HOM05D002649 ORTHO05D002838 4.2e-09 65.9 120 40.8
SGA_v2.0_scaffold69G23159 Striga asiatica HOM05D002649 ORTHO05D002838 4.2e-09 65.9 205 29.8
C05p13640 Brassica napus HOM05D003006 ORTHO05D002838 5.5e-09 65.5 175 36.6
BolC5t30104H Brassica oleracea HOM05D002649 ORTHO05D002838 5.5e-09 65.5 139 40.3
BcaC05g25625 Brassica carinata HOM05D002649 ORTHO05D002838 7.2e-09 65.1 175 36.0
BraA06t24328Z Brassica rapa HOM05D003006 ORTHO05D003438 9.4e-09 64.7 175 34.3
CsaV3_3G040080 Cucumis sativus L. HOM05D002649 ORTHO05D002838 9.4e-09 64.7 205 35.1
Oeu063784.1 Olea europaea HOM05D002649 ORTHO05D002838 1.2e-08 64.3 157 35.0
Migut.J01647 Erythranthe guttata HOM05D002649 ORTHO05D002838 1.6e-08 63.9 221 30.8
Lsat_1_v5_gn_5_157421 Lactuca sativa HOM05D002649 ORTHO05D002838 1.6e-08 63.9 203 29.1
Carub.0001s1527 Capsella rubella HOM05D002649 ORTHO05D002838 2.1e-08 63.5 137 38.0
ClCG10G016270 Citrullus lanatus HOM05D002649 ORTHO05D002838 2.1e-08 63.5 214 33.6
SGA_v2.0_scaffold66G22261 Striga asiatica HOM05D002649 ORTHO05D002838 2.1e-08 63.5 209 29.7
CsaV3_3G040110 Cucumis sativus L. HOM05D002649 ORTHO05D002838 2.7e-08 63.2 216 35.2
HanXRQChr01g0008131 Helianthus annuus HOM05D002649 ORTHO05D002838 3.6e-08 62.8 208 30.8
Sc19g0008130 Simmondsia chinensis HOM05D002649 ORTHO05D002838 3.6e-08 62.8 219 32.0
PGSC0003DMG400008375 Solanum tuberosum HOM05D002649 ORTHO05D002838 3.6e-08 62.8 208 30.8
MSTRG.6365 Avicennia marina HOM05D002649 ORTHO05D002838 4.7e-08 62.4 221 31.2
Thhalv10007131m.g Eutrema salsugineum HOM05D002649 ORTHO05D002838 4.7e-08 62.4 167 37.7
Nn7g36807 Nelumbo nucifera HOM05D002649 ORTHO05D002838 4.7e-08 62.4 214 30.8
Sed0013320 Sechium edule HOM05D002649 ORTHO05D002838 4.7e-08 62.4 207 32.9
PGSC0003DMG400008773 Solanum tuberosum HOM05D002649 ORTHO05D002838 4.7e-08 62.4 215 30.2
Sp1g13840 Schrenkiella parvula HOM05D002649 ORTHO05D002838 6.1e-08 62.0 162 31.5
Solyc12g020050.2 Solanum lycopersicum HOM05D002649 ORTHO05D002838 6.1e-08 62.0 214 28.5
Cfa010953 Carpinus fangiana HOM05D002649 ORTHO05D002838 8.0e-08 61.6 148 34.5
CsaV3_3G040090 Cucumis sativus L. HOM05D002649 ORTHO05D002838 1.0e-07 61.2 210 34.3
Oeu022971.1 Olea europaea HOM05D002649 ORTHO05D002838 1.0e-07 61.2 154 35.7
Carub.0002s2729 Capsella rubella HOM05D002649 ORTHO05D002838 1.8e-07 60.5 136 40.4
MELO3C009748.2 Cucumis melo HOM05D002649 ORTHO05D002838 1.8e-07 60.5 155 34.8
Hma1.2p1_1342F.1_g276940 Hydrangea macrophylla HOM05D002649 ORTHO05D002838 2.3e-07 60.1 124 37.9
Nitab4.5_0010685g0010 Nicotiana tabacum HOM05D002649 ORTHO05D002838 2.3e-07 60.1 215 29.8
BcaB02g07283 Brassica carinata HOM05D002649 ORTHO05D002838 3.0e-07 59.7 171 37.4
Aa31LG7G220 Aethionema arabicum HOM05D002649 ORTHO05D002838 4.0e-07 59.3 135 34.8
Sp5g35540 Schrenkiella parvula HOM05D002649 ORTHO05D002838 4.0e-07 59.3 135 34.1
AL1G27600 Arabidopsis lyrata HOM05D002649 ORTHO05D002838 5.2e-07 58.9 157 36.3
AUR62030308 Chenopodium quinoa HOM05D002649 ORTHO05D002838 5.2e-07 58.9 212 30.2
MELO3C030717.2 Cucumis melo HOM05D002649 ORTHO05D002838 1.5e-06 57.4 75 48.0
HanXRQChr10g0289391 Helianthus annuus HOM05D002649 ORTHO05D002838 2.0e-06 57.0 85 43.5
ATR1096G047 Amborella trichopoda HOM05D002649 ORTHO05D002838 2.6e-06 56.6 166 31.9
AUR62018354 Chenopodium quinoa HOM05D002649 ORTHO05D002838 2.6e-06 56.6 208 30.8
Sopen12g010730 Solanum pennellii HOM05D002649 ORTHO05D002838 2.6e-06 56.6 216 29.2
AT1G15480 Arabidopsis thaliana HOM05D002649 ORTHO05D002838 3.4e-06 56.2 164 34.1
Haze_02991 Corylus avellana HOM05D002649 ORTHO05D002838 4.4e-06 55.8 150 33.3
Migut.G01251 Erythranthe guttata HOM05D002649 ORTHO05D002838 4.4e-06 55.8 137 33.6
TWI38G1060 Tripterygium wilfordii HOM05D002649 ORTHO05D002838 4.4e-06 55.8 208 27.9
SHI24525 Sapria himalayana HOM05D002649 ORTHO05D002838 5.7e-06 55.5 217 30.4
AT3G15590 Arabidopsis thaliana HOM05D002649 ORTHO05D002838 7.5e-06 55.1 129 38.0
BcaC05g25497 Brassica carinata HOM05D002649 ORTHO05D002838 7.5e-06 55.1 163 31.9
Haze_02978 Corylus avellana HOM05D002649 ORTHO05D002838 7.5e-06 55.1 150 32.7
ECA248G3593 Erigeron canadensis HOM05D002649 ORTHO05D002838 7.5e-06 55.1 206 31.1


User provided reference genes

Program Settings