Gene: Sopen12g010730

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g010730
  • Transcript Identifier Sopen12g010730.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 14862630-14867543 : positive

Gene Family Information

  • ID HOM05D002649
  • #Genes/#Species 259/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g010730.1

Descriptions

  • Description PENTATRICOPEPTIDE REPEAT 596 (PPR596) | FUNCTIONS IN: DNA binding | INVOLVED IN: biological_process unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080156
ISO
PLAZA Integrative Orthologymitochondrial mRNA modification AT1G15480

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G80270

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G80270
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT1G80270

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033443 Pentacotripeptide-repeat region of PRORP
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
16.11.3.3.4.20 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (POCO)