Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 0.0e+00 1550.0 789 100.0
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 0.0e+00 1234.2 810 76.2
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 0.0e+00 1229.2 798 76.7
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 0.0e+00 1176.8 814 74.2
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 0.0e+00 1078.5 792 66.7
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 0.0e+00 1075.5 797 66.5
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 5.3e-310 1067.4 798 65.7
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 6.5e-308 1060.4 796 66.3
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 8.0e-306 1053.5 800 65.1
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 1.5e-291 1006.1 814 62.2
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.6e-285 986.1 818 59.9
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 2.7e-285 985.3 823 61.6
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 1.3e-276 956.4 856 57.0
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.3e-276 956.4 820 58.7
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 1.3e-276 956.4 815 59.4
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.7e-276 956.1 818 58.1
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 2.3e-276 955.7 821 59.7
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 2.5e-275 952.2 821 59.2
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 4.3e-275 951.4 817 59.7
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 2.1e-274 949.1 830 57.3
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 4.7e-274 948.0 830 57.2
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 8.0e-274 947.2 833 58.2
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 6.8e-273 944.1 818 58.4
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.0e-272 942.6 819 58.7
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 5.8e-272 941.0 821 58.2
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.2e-271 939.1 818 57.6
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.2e-271 939.1 819 58.0
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 7.3e-267 924.1 793 61.5
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.7e-266 921.4 806 55.6
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 8.1e-266 920.6 825 57.7
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 5.2e-265 917.9 817 57.0
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 5.2e-265 917.9 825 57.0
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.5e-264 916.4 795 60.8
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 5.8e-264 914.4 819 56.7
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 5.8e-264 914.4 811 57.1
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 6.4e-263 911.0 819 57.0
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.1e-262 910.2 811 56.2
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.4e-262 909.8 822 57.1
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 2.1e-261 906.0 823 56.0
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 6.0e-261 904.4 816 55.1
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 1.7e-260 902.9 827 55.5
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.9e-260 901.7 820 56.7
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 2.1e-258 896.0 824 55.9
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 7.6e-256 887.5 826 55.7
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 7.6e-256 887.5 826 55.6
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 9.9e-256 887.1 811 54.9
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.2e-255 885.9 826 55.7
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 1.4e-254 883.2 819 55.1
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 2.4e-254 882.5 827 55.4
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.4e-254 881.3 832 55.2
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 7.1e-254 880.9 806 54.2
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 3.5e-253 878.6 826 55.4
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.1e-251 873.6 799 54.4
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.9e-251 872.8 817 55.2
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 2.5e-251 872.5 810 54.8
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 5.6e-251 871.3 820 53.8
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.6e-250 869.8 817 53.6
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.1e-249 867.1 819 54.0
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.4e-249 865.9 826 55.1
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 9.0e-249 864.0 818 53.8
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.2e-248 863.6 825 53.3
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 5.8e-248 861.3 795 54.5
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 3.8e-247 858.6 834 54.3
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.9e-247 858.2 811 53.6
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 4.9e-247 858.2 753 58.0
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.4e-246 856.7 817 54.0
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 9.3e-246 854.0 818 53.4
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 6.0e-245 851.3 821 54.0
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.0e-244 850.5 821 53.1
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.3e-244 850.1 822 54.0
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 1.7e-244 849.7 804 54.0
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 2.3e-244 849.4 832 54.8
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.3e-244 849.4 833 53.8
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.3e-244 849.4 832 53.8
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.9e-244 848.6 824 53.8
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 5.1e-244 848.2 800 54.0
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.9e-243 846.3 819 53.7
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 9.6e-243 844.0 807 53.9
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 2.8e-242 842.4 822 53.3
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.4e-241 840.1 822 52.8
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 2.4e-241 839.3 828 52.3
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 3.1e-241 839.0 742 57.0
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 4.0e-241 838.6 824 52.9
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.0e-241 838.6 831 52.9
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 4.0e-241 838.6 796 54.5
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.0e-241 837.4 824 53.3
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.0e-240 836.3 857 51.7
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.2e-239 832.8 813 53.5
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 2.2e-239 832.8 717 57.6
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 4.9e-239 831.6 816 52.7
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 8.4e-239 830.9 766 54.8
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.1e-238 830.5 826 52.7
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.4e-238 830.1 817 51.9
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-238 830.1 820 52.7
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.4e-238 830.1 820 52.7
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.4e-238 830.1 818 51.6
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.2e-238 828.6 807 53.5
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.4e-238 828.2 814 52.5
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 7.1e-238 827.8 826 52.1
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.0e-237 824.7 695 58.8
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.0e-236 823.9 805 52.3
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 3.0e-236 822.4 816 51.3
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 3.0e-236 822.4 816 51.7
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 5.1e-236 821.6 820 51.6
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 5.1e-236 821.6 820 52.1
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 5.1e-236 821.6 875 49.8
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 6.7e-236 821.2 818 52.2
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.1e-235 820.5 809 51.8
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.9e-235 819.7 816 50.7
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 9.6e-235 817.4 825 52.1
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 2.8e-234 815.8 728 56.6
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.8e-234 815.1 824 52.8
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.4e-233 812.8 852 51.4
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 3.4e-232 808.9 858 51.4
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.7e-231 806.6 808 54.1
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-230 803.9 814 50.7
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.9e-230 803.1 810 51.4
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 1.6e-229 800.0 814 51.5
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 3.5e-229 798.9 810 50.6
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.5e-229 798.9 827 50.7
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 6.0e-229 798.1 799 51.4
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.0e-228 795.8 801 51.2
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.0e-228 795.8 795 51.7
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 5.1e-228 795.0 811 50.4
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 1.5e-227 793.5 818 50.2
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.5e-227 793.5 811 51.9
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 3.1e-225 785.8 796 51.3
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 5.3e-225 785.0 811 50.3
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 5.8e-224 781.6 725 56.0
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 4.9e-223 778.5 755 52.7
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.7e-219 765.0 831 50.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 8.2e-218 761.1 797 49.6
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.4e-217 760.4 820 50.5
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 4.1e-217 758.8 824 48.8
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.3e-215 753.8 779 50.6
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 5.5e-214 748.4 824 49.9
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.0e-212 742.7 626 58.9
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.5e-211 740.3 822 47.3
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 7.4e-211 738.0 808 50.1
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 5.7e-203 711.8 813 48.0
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.7e-202 710.3 813 47.4
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 3.7e-194 682.6 707 53.5
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.0e-183 647.9 694 49.6
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 2.3e-148 530.4 590 49.2
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.2e-147 528.1 879 36.3
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 6.6e-143 512.3 423 60.3
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.1e-134 485.0 907 33.6
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 3.6e-133 479.9 846 34.6
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 7.3e-126 455.7 908 33.0
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 3.5e-120 436.8 886 33.6
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.8e-109 399.8 403 52.1
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.2e-104 385.2 481 43.5
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 6.1e-104 382.9 458 47.2
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 1.3e-90 338.6 635 35.0
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.1e-84 317.0 249 62.7
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 4.5e-83 313.5 320 51.2
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 7.0e-76 289.7 294 51.4
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 1.2e-72 278.9 262 55.0
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 8.3e-69 266.2 210 59.5
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.6e-64 250.8 253 52.2
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 8.3e-61 239.6 319 41.4
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.1e-57 229.2 682 27.3
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 5.5e-57 226.9 913 23.1
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 2.1e-40 171.8 261 42.9
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.8e-39 168.7 188 48.4
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.4e-38 164.1 104 72.1
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 1.4e-36 159.1 157 52.9
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.1e-31 142.9 204 41.7
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 4.4e-30 137.5 448 27.5
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.4e-30 137.5 99 64.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 9.9e-30 136.3 199 40.7
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 1.2e-27 129.4 98 62.2
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 5.1e-26 124.0 122 54.1
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.9e-25 122.1 419 26.0
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 2.4e-23 115.2 199 37.2
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 7.6e-22 110.2 105 52.4
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 6.0e-19 100.5 100 56.0
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.4e-15 89.4 105 44.8
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.4e-15 88.6 105 44.8
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.9e-15 87.0 105 43.8
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.8e-14 84.0 105 42.9
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.3e-12 76.6 90 43.3
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 4.8e-08 64.3 109 36.7
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.4e-07 62.8 92 41.3
Psat6g134640 Pisum sativum HOM05D001175 ORTHO05D002146 1.5e-06 59.3 37 73.0


User provided reference genes

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