Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.0e-240 836.3 398 100.0
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.8e-89 333.2 275 61.1
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 9.6e-66 255.0 272 49.6
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 5.3e-64 249.2 272 49.3
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 2.6e-63 246.9 273 48.4
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 3.4e-63 246.5 272 48.5
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 4.5e-63 246.1 272 48.2
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 7.6e-63 245.4 272 48.2
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.3e-62 244.6 271 48.0
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 2.9e-62 243.4 272 47.8
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 6.4e-62 242.3 273 48.0
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.9e-61 240.7 272 47.4
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 4.2e-61 239.6 280 45.7
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 4.2e-61 239.6 272 47.8
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 1.2e-60 238.0 279 46.2
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 2.7e-60 236.9 272 47.4
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 2.7e-60 236.9 272 47.4
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 3.5e-60 236.5 272 46.7
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.6e-60 236.1 272 46.7
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.6e-60 236.1 272 47.1
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 4.6e-60 236.1 342 40.9
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.0e-60 235.7 272 47.1
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 6.0e-60 235.7 274 46.4
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 6.0e-60 235.7 276 46.4
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 7.9e-60 235.3 272 46.0
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 7.9e-60 235.3 293 44.4
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 7.9e-60 235.3 280 45.7
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 7.9e-60 235.3 275 46.9
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 7.9e-60 235.3 273 47.6
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.0e-59 235.0 275 45.5
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 1.0e-59 235.0 323 42.4
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.0e-59 235.0 277 46.6
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.0e-59 235.0 271 46.1
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 1.0e-59 235.0 275 46.2
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.0e-59 235.0 273 46.5
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 1.0e-59 235.0 272 47.1
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 1.3e-59 234.6 272 46.0
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.3e-59 234.6 271 46.1
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 1.3e-59 234.6 304 43.4
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.8e-59 234.2 289 45.0
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.8e-59 234.2 272 46.0
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 1.8e-59 234.2 276 47.1
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 2.3e-59 233.8 272 47.1
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 2.3e-59 233.8 277 45.5
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.3e-59 233.8 270 46.7
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 3.0e-59 233.4 272 45.6
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 3.0e-59 233.4 272 46.3
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 3.0e-59 233.4 272 46.0
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 3.0e-59 233.4 276 46.7
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 6.7e-59 232.3 272 46.0
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 8.7e-59 231.9 273 46.5
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 8.7e-59 231.9 275 46.5
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 8.7e-59 231.9 270 46.3
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 8.7e-59 231.9 273 45.1
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.1e-58 231.5 276 47.5
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 1.1e-58 231.5 294 46.6
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 1.5e-58 231.1 295 46.4
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.9e-58 230.7 283 43.5
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.9e-58 230.7 273 46.5
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 2.5e-58 230.3 272 45.6
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 2.5e-58 230.3 272 45.6
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.5e-58 230.3 272 45.2
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.5e-58 230.3 342 40.4
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.5e-58 230.3 276 45.7
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 3.3e-58 229.9 276 45.7
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 3.3e-58 229.9 278 46.4
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 4.3e-58 229.6 273 46.2
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 4.3e-58 229.6 270 45.9
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 4.3e-58 229.6 276 46.4
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 5.6e-58 229.2 285 44.9
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 5.6e-58 229.2 283 45.2
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 5.6e-58 229.2 273 46.9
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 9.6e-58 228.4 259 47.5
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 9.6e-58 228.4 274 46.0
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.3e-57 228.0 272 46.7
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.3e-57 228.0 274 44.2
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.3e-57 228.0 277 46.2
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.3e-57 228.0 289 44.6
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 2.1e-57 227.3 263 47.1
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.8e-57 226.9 274 44.2
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 2.8e-57 226.9 263 47.5
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.4e-56 223.8 318 42.8
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 5.3e-56 222.6 307 42.3
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 5.3e-56 222.6 277 43.3
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 9.0e-56 221.9 284 44.7
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 2.6e-55 220.3 273 43.2
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.6e-55 220.3 347 41.5
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.6e-55 220.3 347 41.5
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.4e-55 219.9 276 44.9
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 4.5e-55 219.5 276 44.6
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 5.8e-55 219.2 228 50.0
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.0e-54 218.4 255 46.3
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 1.7e-54 217.6 226 50.9
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 8.4e-54 215.3 299 42.1
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 5.5e-53 212.6 232 49.1
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 7.1e-53 212.2 286 42.3
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.6e-52 211.1 294 41.5
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.7e-52 210.3 286 44.8
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 6.0e-52 209.1 253 46.2
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 7.9e-52 208.8 279 42.7
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 7.9e-52 208.8 328 39.3
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 1.3e-51 208.0 262 43.9
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.3e-51 208.0 294 41.5
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 3.9e-51 206.5 299 40.5
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.1e-50 204.9 273 42.9
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 1.9e-50 204.1 286 41.6
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 1.9e-50 204.1 278 43.5
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.9e-50 204.1 281 44.5
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.3e-49 201.4 284 41.9
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.8e-48 197.6 216 49.5
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 4.1e-48 196.4 269 41.6
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 9.0e-48 195.3 283 40.3
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 4.5e-47 193.0 349 36.1
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.7e-46 191.0 282 40.8
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 2.9e-46 190.3 255 42.7
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 5.5e-45 186.0 272 40.4
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 4.6e-44 183.0 184 53.3
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 6.1e-44 182.6 180 52.8
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.3e-43 181.4 263 36.5
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 1.1e-42 178.3 304 36.8
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 1.5e-42 177.9 276 38.4
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.9e-42 177.6 245 39.2
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.5e-42 177.2 286 38.5
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 4.1e-40 169.9 170 53.5
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.5e-39 167.9 257 38.1
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 6.5e-38 162.5 182 47.3
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 1.6e-36 157.9 249 37.8
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 2.8e-33 147.1 133 56.4
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 8.2e-33 145.6 186 43.0
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 1.1e-32 145.2 161 49.7
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 8.5e-30 135.6 287 32.1
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 3.0e-27 127.1 271 30.3
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 7.7e-23 112.5 102 56.9
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 6.5e-22 109.4 304 29.9
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 9.4e-21 105.5 82 62.2
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 9.7e-18 95.5 126 41.3
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.2e-17 94.4 187 35.3
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.7e-17 93.6 277 28.2
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.1e-16 92.0 123 43.9
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.2e-13 79.3 107 43.0
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 8.0e-12 75.9 127 37.0
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 3.4e-10 70.5 82 45.1
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 2.2e-06 57.8 51 56.9
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 8.5e-06 55.8 45 55.6


User provided reference genes

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