Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12599_v3 Cicer arietinum L. HOM05D005236 ORTHO05D006557 1.2e-132 476.5 240 100.0
TPR.G36938 Trifolium pratense HOM05D005236 ORTHO05D006557 3.7e-81 305.4 230 71.3
Medtr1g031140 Medicago truncatula HOM05D005236 ORTHO05D006557 3.5e-79 298.9 228 71.5
Psat6g043400 Pisum sativum HOM05D005236 ORTHO05D006557 8.1e-76 287.7 231 71.0
arahy.Tifrunner.gnm1.ann1.X3V98R Arachis hypogaea HOM05D005236 ORTHO05D006557 1.5e-61 240.4 228 60.5
arahy.Tifrunner.gnm1.ann1.KH05JX Arachis hypogaea HOM05D005236 ORTHO05D006557 2.1e-60 236.5 228 59.6
Lalb_Chr10g0096161 Lupinus albus HOM05D005236 ORTHO05D006557 1.1e-59 234.2 230 61.3
Glyma.07G164900 Glycine max HOM05D005236 ORTHO05D006557 1.1e-56 224.2 230 58.7
Phvul.003G032801 Phaseolus vulgaris HOM05D005236 ORTHO05D006557 4.2e-56 222.2 231 56.7
Lj2g0001419 Lotus japonicus HOM05D005236 ORTHO05D006557 2.7e-55 219.5 228 57.5
Medtr3g079925 Medicago truncatula HOM05D005236 ORTHO05D006557 1.9e-53 213.4 172 68.0
FAN17G1995 Fragaria x ananassa HOM05D005236 ORTHO05D006557 3.3e-29 132.9 228 39.0
FvH4_4g32470 Fragaria vesca HOM05D005236 ORTHO05D006557 4.3e-29 132.5 228 39.5
FAN22G1445 Fragaria x ananassa HOM05D005236 ORTHO05D006557 5.7e-29 132.1 227 39.2
TAR622G0787 Trochodendron aralioides HOM05D005236 ORTHO05D006557 2.8e-28 129.8 236 37.7
CSS0043470 Camellia sinensis var. sinensis HOM05D005236 ORTHO05D006557 8.2e-28 128.3 239 38.1
Prupe.1G325100 Prunus persica HOM05D005236 ORTHO05D006557 4.1e-27 125.9 225 36.0
FAN12G1300 Fragaria x ananassa HOM05D005236 ORTHO05D006557 1.5e-26 124.0 245 35.1
RcHm_v2.0_Chr4g0441331 Rosa chinensis HOM05D005236 ORTHO05D006557 2.0e-26 123.6 231 37.7
Thecc.02G282100 Theobroma cacao HOM05D005236 ORTHO05D006557 7.6e-26 121.7 263 36.5
Dinv14429 Davidia involucrata HOM05D005236 ORTHO05D006557 1.0e-25 121.3 234 38.9
GSVIVG01011753001 Vitis vinifera HOM05D005236 ORTHO05D006557 3.8e-25 119.4 227 37.9
MD13G1025100 Malus domestica HOM05D005236 ORTHO05D006557 6.5e-25 118.6 225 36.4
Gorai.005G161600 Gossypium raimondii HOM05D005236 ORTHO05D006557 1.4e-24 117.5 265 34.0
Gohir.D02G144400 Gossypium hirsutum HOM05D005236 ORTHO05D006557 2.5e-24 116.7 265 34.0
Gohir.A03G121000 Gossypium hirsutum HOM05D005236 ORTHO05D006557 1.0e-22 111.3 265 33.2
FAN07G1852 Fragaria x ananassa HOM05D005236 ORTHO05D006557 1.8e-22 110.5 181 40.3
Nitab4.5_0000742g0190 Nicotiana tabacum HOM05D005236 ORTHO05D006557 2.3e-22 110.2 232 36.2
Lj3C872G3 Lonicera japonica HOM05D005236 ORTHO05D006557 3.3e-21 106.3 267 35.2
Manes.15G127900 Manihot esculenta HOM05D005236 ORTHO05D006557 5.7e-21 105.5 260 32.3
MD16G1027600 Malus domestica HOM05D005236 ORTHO05D006557 9.7e-21 104.8 225 34.2
Cc11_g08660 Coffea canephora HOM05D005236 ORTHO05D006557 5.3e-19 99.0 231 35.1
TWI79G0143 Tripterygium wilfordii HOM05D005236 ORTHO05D006557 5.3e-19 99.0 228 34.6
CANSAT64G0788 Cannabis sativa HOM05D005236 ORTHO05D006557 6.9e-19 98.6 232 34.1
CAN.G1298.25 Capsicum annuum HOM05D005236 ORTHO05D006557 2.0e-18 97.1 234 35.0
Potri.010G112500 Populus trichocarpa HOM05D005236 ORTHO05D006557 2.6e-18 96.7 255 33.3
Duzib251G0654 Durio zibethinus HOM05D005236 ORTHO05D006557 4.5e-18 95.9 297 30.0
Sed0013091 Sechium edule HOM05D005236 ORTHO05D006557 3.8e-17 92.8 219 32.9
EL10Ac6g14212 Beta vulgaris HOM05D005236 ORTHO05D006557 5.0e-17 92.4 235 30.6
Peaxi162Scf00159g00077 Petunia axillaris HOM05D005236 ORTHO05D006557 6.5e-17 92.0 240 31.7
CiPaw.05G250200 Carya illinoinensis HOM05D005236 ORTHO05D006557 8.5e-17 91.7 174 35.6
MSTRG.7621 Avicennia marina HOM05D005236 ORTHO05D006557 1.1e-16 91.3 239 32.2
Sopen05g003880 Solanum pennellii HOM05D005236 ORTHO05D006557 1.1e-16 91.3 231 34.2
Sc14g0007110 Simmondsia chinensis HOM05D005236 ORTHO05D006557 1.4e-16 90.9 229 33.2
Hund24974 Selenicereus undatus HOM05D005236 ORTHO05D006557 7.2e-16 88.6 237 30.8
AUR62038508 Chenopodium quinoa HOM05D005236 ORTHO05D006557 1.6e-15 87.4 228 31.6
AUR62014142 Chenopodium quinoa HOM05D005236 ORTHO05D006557 7.9e-15 85.1 230 32.2
Atru.chr11.574_Atru.chr11.575 Acer truncatum HOM05D005236 ORTHO05D006557 6.7e-14 82.0 181 33.7
CsaV3_5G013670 Cucumis sativus L. HOM05D005236 ORTHO05D006557 2.6e-13 80.1 223 30.0
MBI10_g08556_MAGBIO Magnolia biondii HOM05D005236 ORTHO05D006557 2.6e-13 80.1 251 29.5
SGA_v2.0_scaffold50G18498 Striga asiatica HOM05D005236 ORTHO05D006557 3.3e-13 79.7 206 31.6
Actinidia13577 Actinidia chinensis HOM05D005236 ORTHO05D006557 7.4e-13 78.6 163 36.8
Aqoxy3G00124 Aquilegia oxysepala HOM05D005236 ORTHO05D006557 7.4e-13 78.6 236 29.2
MELO3C018322.2 Cucumis melo HOM05D005236 ORTHO05D006557 7.4e-13 78.6 222 30.6
Solyc05g008030.1 Solanum lycopersicum HOM05D005236 ORTHO05D006557 3.7e-12 76.3 176 34.7
Rhsim09G0066800 Rhododendron simsii HOM05D005236 ORTHO05D006557 1.8e-11 73.9 207 31.9
Eucgr.G02185 Eucalyptus grandis HOM05D005236 ORTHO05D006557 3.1e-11 73.2 189 33.3
CARHR143960 Cardamine hirsuta HOM05D005236 ORTHO05D006557 4.1e-11 72.8 226 30.5
DCAR_007297 Daucus carota HOM05D005236 ORTHO05D006557 5.3e-11 72.4 281 28.5
Lsat_1_v5_gn_3_54941 Lactuca sativa HOM05D005236 ORTHO05D006557 1.5e-10 70.9 223 30.5
Ciclev10017747m.g Citrus clementina HOM05D005236 ORTHO05D006557 2.0e-10 70.5 154 37.0
Thhalv10000760m.g Eutrema salsugineum HOM05D005236 ORTHO05D006557 2.0e-10 70.5 231 30.3
COL.COLO4_20489 Corchorus olitorius HOM05D005236 ORTHO05D006557 3.4e-10 69.7 237 28.3
Migut.L00644 Erythranthe guttata HOM05D005236 ORTHO05D006557 3.4e-10 69.7 230 29.1
Migut.L00833 Erythranthe guttata HOM05D005236 ORTHO05D006557 4.5e-10 69.3 230 29.1
Ah.03g137280 Amaranthus hybridus HOM05D005236 ORTHO05D006557 5.9e-10 68.9 217 28.1
Carub.0005s0040 Capsella rubella HOM05D005236 ORTHO05D006557 7.7e-10 68.6 233 29.6
ECA246G1132 Erigeron canadensis HOM05D005236 ORTHO05D006557 7.7e-10 68.6 225 29.8
AT2G01440 Arabidopsis thaliana HOM05D005236 ORTHO05D006557 2.2e-09 67.0 235 29.4
Zm00001eb252400 Zea mays HOM05D005236 ORTHO05D006557 5.0e-09 65.9 226 27.4
Aa31LG2G8500 Aethionema arabicum HOM05D005236 ORTHO05D006557 6.5e-09 65.5 235 28.5
AL5G10420 Arabidopsis lyrata HOM05D005236 ORTHO05D006557 6.5e-09 65.5 224 29.0
PSO017G4096 Papaver somniferum HOM05D005236 ORTHO05D006557 1.4e-08 64.3 267 26.6
ATR0598G134 Amborella trichopoda HOM05D005236 ORTHO05D006557 4.2e-08 62.8 105 41.0
HanXRQChr15g0484551 Helianthus annuus HOM05D005236 ORTHO05D006557 4.2e-08 62.8 229 25.8
BcaC06g34177 Brassica carinata HOM05D005236 ORTHO05D006557 2.7e-07 60.1 236 28.0
C07p31870 Brassica napus HOM05D005236 ORTHO05D006557 2.7e-07 60.1 236 28.0
SalBow8G3693 Salvia bowleyana HOM05D005236 ORTHO05D006557 3.6e-07 59.7 240 24.6
SalBow8G4798 Salvia bowleyana HOM05D005236 ORTHO05D006557 3.6e-07 59.7 240 24.6
Hma1.2p1_0096F.1_g047840 Hydrangea macrophylla HOM05D005236 ORTHO05D006557 4.7e-07 59.3 167 27.5
BolC7t43733H Brassica oleracea HOM05D005236 ORTHO05D006557 8.0e-07 58.5 235 27.7
Sp2g12880 Schrenkiella parvula HOM05D005236 ORTHO05D006557 1.4e-06 57.8 232 27.6
A06p44440 Brassica napus HOM05D005236 ORTHO05D006557 3.9e-06 56.2 231 28.6
BraA06t27318Z Brassica rapa HOM05D005236 ORTHO05D006557 3.9e-06 56.2 231 28.6


User provided reference genes

Program Settings