Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.2e-180 636.7 418 100.0
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.2e-180 636.7 418 100.0
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 5.2e-147 525.0 423 77.1
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 1.4e-144 516.9 451 76.5
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 2.1e-135 486.5 508 68.3
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 5.2e-131 471.9 486 67.5
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 7.1e-128 461.5 485 65.4
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 5.6e-125 451.8 480 61.2
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 6.2e-124 448.4 481 61.3
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.6e-119 433.7 507 59.6
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 2.0e-114 416.8 462 68.0
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 5.6e-109 398.7 533 59.1
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 6.9e-107 391.7 539 56.8
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 5.9e-98 362.1 423 54.4
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 1.4e-96 357.5 424 57.8
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 5.5e-96 355.5 430 65.8
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 7.2e-96 355.1 427 54.1
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 4.6e-95 352.4 439 54.9
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 7.9e-95 351.7 427 56.7
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 7.9e-95 351.7 432 60.2
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 4.3e-93 345.9 468 61.8
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.7e-92 344.0 426 53.5
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 2.2e-92 343.6 444 51.4
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 6.3e-92 342.0 500 45.2
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 1.8e-91 340.5 446 57.0
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.8e-91 340.5 452 61.3
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 2.4e-91 340.1 443 56.9
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 3.1e-91 339.7 429 57.6
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 5.3e-91 339.0 431 59.6
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 1.5e-90 337.4 431 61.5
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 2.6e-90 336.7 425 58.4
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 4.5e-90 335.9 421 56.3
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.9e-89 333.2 431 58.7
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 1.1e-88 331.3 428 53.0
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 5.5e-88 328.9 435 52.9
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 9.4e-88 328.2 423 57.0
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.6e-87 327.4 427 56.0
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 1.4e-86 324.3 436 52.8
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 3.0e-86 323.2 449 52.3
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 8.8e-86 321.6 461 50.8
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 1.1e-85 321.2 430 60.0
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 3.3e-85 319.7 499 45.5
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 4.4e-85 319.3 508 53.5
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 5.7e-85 318.9 420 51.2
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 1.7e-84 317.4 460 55.7
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 4.8e-84 315.8 421 55.8
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 4.8e-84 315.8 424 53.5
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 6.3e-84 315.5 440 58.4
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 6.3e-84 315.5 421 59.4
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 8.2e-84 315.1 425 52.5
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 2.4e-83 313.5 420 56.0
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 3.1e-83 313.2 471 56.7
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 1.2e-82 311.2 451 48.8
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 1.5e-82 310.8 493 47.3
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 2.0e-82 310.5 573 48.7
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.7e-81 307.4 420 56.4
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 2.9e-81 306.6 539 44.5
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 5.0e-81 305.8 455 45.7
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 6.5e-81 305.4 465 47.1
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 6.5e-81 305.4 465 47.1
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 2.1e-79 300.4 569 47.3
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 3.9e-78 296.2 425 58.8
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.5e-77 294.3 435 54.3
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 5.7e-77 292.4 425 54.8
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 7.4e-77 292.0 442 53.8
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 7.4e-77 292.0 442 54.1
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 3.7e-76 289.7 497 48.9
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 4.8e-76 289.3 452 50.9
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 6.3e-76 288.9 444 50.5
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.4e-75 287.7 444 50.2
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 3.1e-75 286.6 455 54.3
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 7.0e-75 285.4 449 52.3
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 2.0e-74 283.9 425 55.3
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 2.6e-74 283.5 450 54.7
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 3.5e-74 283.1 537 49.9
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 7.7e-74 282.0 426 52.1
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.3e-73 281.2 473 55.8
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 2.9e-73 280.0 441 50.8
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 4.2e-72 276.2 490 51.6
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 7.2e-72 275.4 573 38.9
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 2.1e-71 273.9 527 50.9
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 1.0e-70 271.6 518 50.4
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 1.8e-70 270.8 520 45.0
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.3e-69 266.5 578 46.2
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.4e-69 266.2 598 44.8
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 9.7e-69 265.0 429 52.2
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.7e-68 264.2 505 50.3
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.7e-68 264.2 619 43.8
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 3.7e-68 263.1 619 43.0
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.7e-68 263.1 619 43.0
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 1.4e-67 261.2 594 43.4
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 5.9e-66 255.8 521 47.2
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 4.2e-64 249.6 170 78.2
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 1.0e-62 245.0 474 44.7
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.0e-62 245.0 625 35.4
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 5.7e-61 239.2 545 43.1
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 5.7e-61 239.2 218 65.1
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 1.3e-57 228.0 528 46.0
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 2.3e-57 227.3 522 43.7
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 2.5e-56 223.8 623 40.9
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 2.3e-54 217.2 169 70.4
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 9.8e-53 211.8 171 70.2
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.0e-49 201.8 432 40.7
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 1.3e-49 201.4 434 42.4
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 6.8e-46 189.1 167 67.7
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.9e-44 183.7 349 51.3
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 9.2e-43 178.7 514 43.8
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 9.5e-40 168.7 177 55.4
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.1e-38 163.7 390 38.7
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 6.4e-36 156.0 161 59.0
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.4e-35 154.8 175 53.1
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.7e-34 150.6 93 83.9
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 4.6e-34 149.8 117 74.4
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.7e-33 147.9 95 81.1
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 5.0e-33 146.4 321 49.5
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 1.2e-31 141.7 82 89.0
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.6e-31 141.4 148 55.4
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 2.4e-27 127.5 109 64.2
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 5.4e-27 126.3 102 63.7
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 3.0e-25 120.6 165 47.3
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.3e-24 116.7 399 37.6
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 5.2e-22 109.8 177 37.9
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 8.9e-22 109.0 146 50.7
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 9.9e-21 105.5 108 57.4
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 2.9e-20 104.0 158 45.6
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 9.2e-19 99.0 63 79.4
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 2.3e-17 94.4 62 74.2
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 4.3e-16 90.1 105 53.3
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.4e-14 84.3 94 50.0
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 2.6e-13 80.9 185 33.0
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.9e-11 74.7 60 70.0
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.4e-11 73.2 100 44.0
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.1e-11 72.8 88 45.5
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 1.2e-10 72.0 376 27.7
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 4.3e-08 63.5 64 54.7
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 9.6e-08 62.4 47 66.0
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 9.6e-08 62.4 47 66.0
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 4.8e-07 60.1 62 64.5
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 8.1e-07 59.3 176 27.8


User provided reference genes

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