Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10178_v3 Cicer arietinum L. HOM05D008392 ORTHO05D010441 2.0e-161 572.4 288 100.0
Psat6g152920 Pisum sativum HOM05D008392 ORTHO05D010441 4.9e-88 328.6 312 59.3
Psat6g152960 Pisum sativum HOM05D008392 ORTHO05D010441 3.9e-85 318.9 313 59.1
Glyma.20G096200 Glycine max HOM05D008392 ORTHO05D010441 3.8e-80 302.4 306 57.8
Medtr5g095070 Medicago truncatula HOM05D008392 ORTHO05D010441 7.9e-70 268.1 257 61.9
Medtr5g080030 Medicago truncatula HOM05D008392 ORTHO05D010441 2.6e-68 263.1 367 47.1
Phvul.007G202100 Phaseolus vulgaris HOM05D008392 ORTHO05D010441 2.0e-65 253.4 269 53.2
VMungo0720G2188 Vigna mungo HOM05D008392 ORTHO05D010441 3.4e-65 252.7 298 50.3
Lalb_Chr19g0129211 Lupinus albus HOM05D008392 ORTHO05D010441 7.7e-65 251.5 268 55.6
Lj5g0025247 Lotus japonicus HOM05D008392 ORTHO05D010441 1.7e-64 250.4 299 54.5
Lj1g0008102 Lotus japonicus HOM05D008392 ORTHO05D010441 1.5e-60 237.3 275 52.7
Lalb_Chr06g0167451 Lupinus albus HOM05D008392 ORTHO05D010441 2.4e-58 229.9 303 49.2
arahy.Tifrunner.gnm1.ann1.S3TC9P Arachis hypogaea HOM05D008392 ORTHO05D010441 7.7e-57 224.9 283 49.5
arahy.Tifrunner.gnm1.ann1.DRX87E Arachis hypogaea HOM05D008392 ORTHO05D010441 3.8e-56 222.6 283 49.1
TPR.G8444 Trifolium pratense HOM05D008392 ORTHO05D010441 1.8e-50 203.8 266 50.8
Dinv24467 Davidia involucrata HOM05D008392 ORTHO05D010441 8.8e-45 184.9 327 38.8
Medtr1g084150 Medicago truncatula HOM05D008392 ORTHO05D010441 1.2e-44 184.5 221 50.7
QL03p014198 Quercus lobata HOM05D008392 ORTHO05D010441 8.0e-38 161.8 318 34.6
MD12G1204900 Malus domestica HOM05D008392 ORTHO05D010441 8.8e-37 158.3 273 37.0
Glyma.10G146432 Glycine max HOM05D008392 ORTHO05D010441 1.2e-36 157.9 101 77.2
MD12G1205000 Malus domestica HOM05D008392 ORTHO05D010441 2.0e-36 157.1 283 36.4
Actinidia35516 Actinidia chinensis HOM05D008392 ORTHO05D010441 8.3e-35 151.8 323 34.4
MD04G1192900 Malus domestica HOM05D008392 ORTHO05D010441 1.1e-34 151.4 281 35.6
Prupe.6G312100 Prunus persica HOM05D008392 ORTHO05D010441 1.8e-34 150.6 271 39.1
Solyc01g100620.3 Solanum lycopersicum HOM05D008392 ORTHO05D010441 9.2e-34 148.3 265 35.8
Cc02_g35180 Coffea canephora HOM05D008392 ORTHO05D010441 2.3e-32 143.7 322 31.4
CANSAT54G2036 Cannabis sativa HOM05D008392 ORTHO05D010441 2.9e-32 143.3 274 35.0
Psat0s3339g0160 Pisum sativum HOM05D008392 ORTHO05D010441 2.9e-32 143.3 101 68.3
CAN.G1076.23 Capsicum annuum HOM05D008392 ORTHO05D010441 5.0e-32 142.5 314 33.4
Sopen01g044120 Solanum pennellii HOM05D008392 ORTHO05D010441 8.6e-32 141.7 275 34.9
Peaxi162Scf01061g00127 Petunia axillaris HOM05D008392 ORTHO05D010441 7.3e-31 138.7 344 31.7
DCAR_005422 Daucus carota HOM05D008392 ORTHO05D010441 1.3e-27 127.9 359 30.6
TAR362G1147 Trochodendron aralioides HOM05D001261 ORTHO05D010441 6.4e-27 125.6 407 28.5
RcHm_v2.0_Chr3g0457251 Rosa chinensis HOM05D008392 ORTHO05D010441 8.3e-27 125.2 331 30.8
DCAR_025288 Daucus carota HOM05D008392 ORTHO05D010441 1.1e-26 124.8 249 34.5
Psat6g152800 Pisum sativum HOM05D008392 ORTHO05D010441 3.3e-23 113.2 143 46.9
Lsat_1_v5_gn_5_40160 Lactuca sativa HOM05D008392 ORTHO05D010441 2.1e-22 110.5 236 31.8
Oeu053741.2 Olea europaea HOM05D008392 ORTHO05D010441 3.6e-22 109.8 300 28.7
vmacro01573 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.4e-21 107.8 320 30.0
SGA_v2.0_scaffold4G01973 Striga asiatica HOM05D008392 ORTHO05D010441 6.8e-21 105.5 234 32.1
Nn5g30235 Nelumbo nucifera HOM05D001261 ORTHO05D010441 1.5e-20 104.4 311 31.2
SalBow7G4279 Salvia bowleyana HOM05D008392 ORTHO05D010441 5.8e-20 102.4 245 29.8
FAN14G5205 Fragaria x ananassa HOM05D001457 ORTHO05D010441 3.7e-19 99.8 131 41.2
FvH4_6g07580 Fragaria vesca HOM05D008392 ORTHO05D010441 6.4e-19 99.0 326 27.9
FAN05G3611 Fragaria x ananassa HOM05D008392 ORTHO05D010441 1.4e-18 97.8 131 40.5
FAN02G4301 Fragaria x ananassa HOM05D001457 ORTHO05D010441 5.4e-18 95.9 131 38.9
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.6e-17 94.4 245 29.8
Rhsim11G0096300 Rhododendron simsii HOM05D008392 ORTHO05D010441 1.0e-16 91.7 324 27.2
TPR.G2592 Trifolium pratense HOM05D008392 ORTHO05D010441 1.3e-16 91.3 79 64.6
Aqoxy2G02705 Aquilegia oxysepala HOM05D001261 ORTHO05D010441 5.0e-16 89.4 294 27.9
Nitab4.5_0004525g0010 Nicotiana tabacum HOM05D008392 ORTHO05D010441 1.1e-13 81.6 337 26.4
Nitab4.5_0001338g0070 Nicotiana tabacum HOM05D008392 ORTHO05D010441 2.0e-12 77.4 302 26.2
Glyma.10G146366 Glycine max HOM05D008392 ORTHO05D010441 7.5e-12 75.5 92 48.9
Nitab4.5_0002216g0010 Nicotiana tabacum HOM05D001261 ORTHO05D001130 1.1e-10 71.6 283 25.8
Nitab4.5_0003570g0010 Nicotiana tabacum HOM05D001261 ORTHO05D001130 1.1e-10 71.6 283 26.1
Prupe.6G035300 Prunus persica HOM05D001261 ORTHO05D001130 4.1e-10 69.7 240 27.9
Cpa.g.sc12.68 Carica papaya HOM05D001261 ORTHO05D001130 2.1e-09 67.4 260 25.8
CDE08G0491 Ceratophyllum demersum HOM05D008392 ORTHO05D010441 2.1e-09 67.4 196 26.0
ATR0693G224 Amborella trichopoda HOM05D001261 ORTHO05D001130 2.7e-09 67.0 290 25.2
THA.LOC104810304 Tarenaya hassleriana HOM05D001261 ORTHO05D001130 2.7e-09 67.0 248 27.8
Aa31LG8G570 Aethionema arabicum HOM05D001261 ORTHO05D001130 4.6e-09 66.2 267 26.2
Migut.B00948 Erythranthe guttata HOM05D008392 ORTHO05D010441 1.3e-08 64.7 187 29.4
Rhsim04G0007700 Rhododendron simsii HOM05D001261 ORTHO05D001130 1.3e-08 64.7 266 26.7
CDE03G0487 Ceratophyllum demersum HOM05D001261 ORTHO05D001130 2.3e-08 63.9 224 24.1
A06p00070 Brassica napus HOM05D001261 ORTHO05D001130 3.0e-08 63.5 118 35.6
BraA06t23222Z Brassica rapa HOM05D001261 ORTHO05D001130 3.0e-08 63.5 118 35.6
Duzib268G0395 Durio zibethinus HOM05D001261 ORTHO05D001130 3.9e-08 63.2 268 25.7
MD08G1006400 Malus domestica HOM05D001261 ORTHO05D001130 3.9e-08 63.2 70 44.3
Glyma.04G113000 Glycine max HOM05D001261 ORTHO05D001130 5.1e-08 62.8 237 26.2
Nn5g30869 Nelumbo nucifera HOM05D001261 ORTHO05D001130 5.1e-08 62.8 65 43.1
Thhalv10021143m.g Eutrema salsugineum HOM05D001261 ORTHO05D001130 6.6e-08 62.4 241 26.6
TPR.G16692 Trifolium pratense HOM05D001261 ORTHO05D001130 6.6e-08 62.4 279 25.8
Lalb_Chr21g0307471 Lupinus albus HOM05D001261 ORTHO05D001130 8.6e-08 62.0 266 25.9
PSO782G5301 Papaver somniferum HOM05D001261 ORTHO05D001130 1.1e-07 61.6 283 24.0
Sp3g11550 Schrenkiella parvula HOM05D001261 ORTHO05D001130 1.1e-07 61.6 270 27.0
Actinidia03674 Actinidia chinensis HOM05D001261 ORTHO05D001130 1.5e-07 61.2 270 24.4
AUR62013853 Chenopodium quinoa HOM05D001261 ORTHO05D001130 1.5e-07 61.2 95 35.8
MBI08_g40331_MAGBIO Magnolia biondii HOM05D001261 ORTHO05D001130 1.5e-07 61.2 63 42.9
Nn1g07633 Nelumbo nucifera HOM05D001261 ORTHO05D001130 1.5e-07 61.2 271 25.8
GSVIVG01008723001 Vitis vinifera HOM05D001261 ORTHO05D001130 1.5e-07 61.2 70 40.0
BcaC08g43643 Brassica carinata HOM05D001261 ORTHO05D001130 1.9e-07 60.8 224 28.1
C06p10620 Brassica napus HOM05D001261 ORTHO05D001130 1.9e-07 60.8 224 28.1
BolC6t36142H Brassica oleracea HOM05D001261 ORTHO05D001130 1.9e-07 60.8 224 28.1
CARHR087960 Cardamine hirsuta HOM05D001261 ORTHO05D001130 1.9e-07 60.8 249 26.9
Cc10_g01010 Coffea canephora HOM05D001261 ORTHO05D001130 2.5e-07 60.5 66 43.9
Dinv39562 Davidia involucrata HOM05D001261 ORTHO05D001130 2.5e-07 60.5 72 43.1
ECA240G2895 Erigeron canadensis HOM05D001261 ORTHO05D001130 2.5e-07 60.5 216 26.9
FAN21G2040 Fragaria x ananassa HOM05D001261 ORTHO05D001130 2.5e-07 60.5 91 36.3
Lj3g0005977 Lotus japonicus HOM05D001261 ORTHO05D001130 2.5e-07 60.5 97 34.0
Lalb_Chr18g0048641 Lupinus albus HOM05D001261 ORTHO05D001130 2.5e-07 60.5 264 24.6
MD15G1005800 Malus domestica HOM05D001261 ORTHO05D001130 2.5e-07 60.5 83 37.3
Solyc12g094440.2 Solanum lycopersicum HOM05D001261 ORTHO05D001130 2.5e-07 60.5 205 27.3
THA.LOC104822702 Tarenaya hassleriana HOM05D001261 ORTHO05D001130 2.5e-07 60.5 267 25.8
Aa31LG10G570 Aethionema arabicum HOM05D001261 ORTHO05D001130 3.3e-07 60.1 96 36.5
Carub.0003s1273 Capsella rubella HOM05D001261 ORTHO05D001130 3.3e-07 60.1 274 25.9
CAN.G8.47 Capsicum annuum HOM05D001261 ORTHO05D001130 3.3e-07 60.1 126 31.7
ECA232G0527 Erigeron canadensis HOM05D001261 ORTHO05D001130 3.3e-07 60.1 240 26.2
Nitab4.5_0002353g0020 Nicotiana tabacum HOM05D001261 ORTHO05D001130 3.3e-07 60.1 63 42.9
CANSAT11G1516 Cannabis sativa HOM05D001261 ORTHO05D001130 4.3e-07 59.7 270 26.7
Cfa016960 Carpinus fangiana HOM05D001261 ORTHO05D001130 4.3e-07 59.7 286 24.8
AUR62036749 Chenopodium quinoa HOM05D001261 ORTHO05D001130 4.3e-07 59.7 70 38.6
FvH4_3g41610 Fragaria vesca HOM05D001261 ORTHO05D001130 4.3e-07 59.7 91 36.3
FAN11G1862 Fragaria x ananassa HOM05D001261 ORTHO05D001130 4.3e-07 59.7 91 36.3
PSO063G5485 Papaver somniferum HOM05D001261 ORTHO05D001130 4.3e-07 59.7 283 23.7
PSO170G1184 Papaver somniferum HOM05D001261 ORTHO05D001130 4.3e-07 59.7 70 40.0
EL10Ac3g06122 Beta vulgaris HOM05D001261 ORTHO05D001130 5.6e-07 59.3 111 36.0
Ca_14139_v3 Cicer arietinum L. HOM05D001261 ORTHO05D001130 5.6e-07 59.3 277 26.7
Thhalv10011675m.g Eutrema salsugineum HOM05D001261 ORTHO05D001130 5.6e-07 59.3 236 26.3
FAN16G2494 Fragaria x ananassa HOM05D001261 ORTHO05D001130 5.6e-07 59.3 91 36.3
Nn6g31871 Nelumbo nucifera HOM05D001261 ORTHO05D001130 5.6e-07 59.3 63 41.3
PSO063G2803 Papaver somniferum HOM05D001261 ORTHO05D001130 5.6e-07 59.3 251 25.1
Prupe.1G358300 Prunus persica HOM05D001261 ORTHO05D001130 5.6e-07 59.3 63 42.9
Solyc12g016190.2 Solanum lycopersicum HOM05D001261 ORTHO05D001130 5.6e-07 59.3 268 23.9
arahy.Tifrunner.gnm1.ann1.1C5WUF Arachis hypogaea HOM05D001261 ORTHO05D001130 7.3e-07 58.9 255 24.3
CSS0050103 Camellia sinensis var. sinensis HOM05D001261 ORTHO05D001130 7.3e-07 58.9 211 25.1
Medtr3g009890 Medicago truncatula HOM05D001261 ORTHO05D001130 7.3e-07 58.9 223 27.4
Sopen12g031330 Solanum pennellii HOM05D001261 ORTHO05D001130 7.3e-07 58.9 205 27.8
AL3G25200 Arabidopsis lyrata HOM05D001261 ORTHO05D001130 9.5e-07 58.5 274 25.9
CDE06G1624 Ceratophyllum demersum HOM05D000050 ORTHO05D001130 9.5e-07 58.5 75 38.7
Migut.B00949 Erythranthe guttata HOM05D008392 ORTHO05D010441 9.5e-07 58.5 45 60.0
FAN25G3495 Fragaria x ananassa HOM05D001261 ORTHO05D001130 9.5e-07 58.5 91 34.1
MD13G1138800 Malus domestica HOM05D001261 ORTHO05D001130 9.5e-07 58.5 86 37.2
PGSC0003DMG400029327 Solanum tuberosum HOM05D001261 ORTHO05D001130 9.5e-07 58.5 63 42.9
VMungo0720G0565 Vigna mungo HOM05D001261 ORTHO05D001130 9.5e-07 58.5 294 24.1
Zm00001eb240740 Zea mays HOM05D001261 ORTHO05D001130 9.5e-07 58.5 127 27.6
Aqoxy1G04297 Aquilegia oxysepala HOM05D001261 ORTHO05D001130 1.2e-06 58.2 271 23.2
arahy.Tifrunner.gnm1.ann1.8P4JNJ Arachis hypogaea HOM05D001261 ORTHO05D001130 1.2e-06 58.2 255 24.3
Ciclev10008919m.g Citrus clementina HOM05D001261 ORTHO05D001130 1.2e-06 58.2 275 25.5
Medtr7g005970 Medicago truncatula HOM05D001261 ORTHO05D001130 1.2e-06 58.2 254 24.8
PSO210G5207 Papaver somniferum HOM05D001261 ORTHO05D001130 1.2e-06 58.2 70 38.6
Phvul.007G006000 Phaseolus vulgaris HOM05D001261 ORTHO05D001130 1.2e-06 58.2 292 25.3
Pp3c1_33100 Physcomitrium patens HOM05D001261 ORTHO05D001130 1.2e-06 58.2 62 45.2
TWI38G2024 Tripterygium wilfordii HOM05D001261 ORTHO05D001130 1.2e-06 58.2 98 33.7
CANSAT25G2358 Cannabis sativa HOM05D001261 ORTHO05D001130 1.6e-06 57.8 63 42.9
MBI19_g03251_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.6e-06 57.8 206 27.2
Phvul.009G020700 Phaseolus vulgaris HOM05D001261 ORTHO05D001130 1.6e-06 57.8 180 26.1
RcHm_v2.0_Chr5g0074651 Rosa chinensis HOM05D001261 ORTHO05D001130 1.6e-06 57.8 91 34.1
Hund22972 Selenicereus undatus HOM05D001261 ORTHO05D001130 1.6e-06 57.8 97 35.1
arahy.Tifrunner.gnm1.ann1.K5DIHH Arachis hypogaea HOM05D001261 ORTHO05D001130 2.1e-06 57.4 68 35.3
BcaB08g35798 Brassica carinata HOM05D001261 ORTHO05D001130 2.1e-06 57.4 224 27.7
PGR083G2486 Punica granatum HOM05D001261 ORTHO05D001130 2.1e-06 57.4 243 25.1
THA.LOC104811448 Tarenaya hassleriana HOM05D001261 ORTHO05D001130 2.1e-06 57.4 63 41.3
Atru.chr2.3895 Acer truncatum HOM05D001261 ORTHO05D001130 2.8e-06 57.0 90 34.4
Ah.13g073330 Amaranthus hybridus HOM05D001261 ORTHO05D001130 2.8e-06 57.0 111 33.3
SalBow7G1352 Salvia bowleyana HOM05D001261 ORTHO05D001130 2.8e-06 57.0 63 39.7
VMungo1309G2014 Vigna mungo HOM05D001261 ORTHO05D001130 2.8e-06 57.0 130 28.5
Zm00001eb203110 Zea mays HOM05D001261 ORTHO05D001130 2.8e-06 57.0 98 28.6
BcaB06g25460 Brassica carinata HOM05D001261 ORTHO05D001130 3.6e-06 56.6 274 25.2
BcaB07g33194 Brassica carinata HOM05D001261 ORTHO05D001130 3.6e-06 56.6 118 33.9
CARHR069650 Cardamine hirsuta HOM05D001261 ORTHO05D001130 3.6e-06 56.6 84 33.3
DCAR_013758 Daucus carota HOM05D001261 ORTHO05D001130 3.6e-06 56.6 88 35.2
Migut.C00909 Erythranthe guttata HOM05D001261 ORTHO05D001130 3.6e-06 56.6 67 37.3
Gohir.A05G182100 Gossypium hirsutum HOM05D001261 ORTHO05D001130 3.6e-06 56.6 111 30.6
Gohir.A13G128500 Gossypium hirsutum HOM05D001261 ORTHO05D001130 3.6e-06 56.6 111 30.6
QL08p000529 Quercus lobata HOM05D001261 ORTHO05D001130 3.6e-06 56.6 87 35.6
Dinv03680 Davidia involucrata HOM05D001261 ORTHO05D001130 4.7e-06 56.2 74 41.9
FAN15G0503 Fragaria x ananassa HOM05D001261 ORTHO05D001130 4.7e-06 56.2 63 39.7
FAN27G0685 Fragaria x ananassa HOM05D001261 ORTHO05D001130 4.7e-06 56.2 63 39.7
MD11G1045900 Malus domestica HOM05D001261 ORTHO05D001130 4.7e-06 56.2 89 37.1
Sp1g41270 Schrenkiella parvula HOM05D001261 ORTHO05D001130 4.7e-06 56.2 232 25.4
unitig_21.g20260 Utricularia gibba HOM05D001261 ORTHO05D001130 4.7e-06 56.2 239 24.7
arahy.Tifrunner.gnm1.ann1.J9QP8S Arachis hypogaea HOM05D001261 ORTHO05D001130 6.2e-06 55.8 295 23.7
CAN.G401.4 Capsicum annuum HOM05D001261 ORTHO05D001130 6.2e-06 55.8 199 27.1
Cfa014019 Carpinus fangiana HOM05D001261 ORTHO05D001130 6.2e-06 55.8 111 31.5
Haze_09915 Corylus avellana HOM05D001261 ORTHO05D001130 6.2e-06 55.8 110 30.0
Lalb_Chr02g0144151 Lupinus albus HOM05D001261 ORTHO05D001130 6.2e-06 55.8 274 22.6
MBI19_g14784_MAGBIO Magnolia biondii HOM05D001261 ORTHO05D001130 6.2e-06 55.8 62 41.9
Medtr3g114920 Medicago truncatula HOM05D001261 ORTHO05D001130 6.2e-06 55.8 63 38.1
Peaxi162Scf15341g00003 Petunia axillaris HOM05D001261 ORTHO05D001130 6.2e-06 55.8 195 27.2
Pp3c7_23660 Physcomitrium patens HOM05D001261 ORTHO05D001130 6.2e-06 55.8 99 33.3
Sopen12g007980 Solanum pennellii HOM05D001261 ORTHO05D001130 6.2e-06 55.8 268 23.5
GSVIVG01014843001 Vitis vinifera HOM05D001261 ORTHO05D001130 6.2e-06 55.8 275 23.6
Actinidia15468 Actinidia chinensis HOM05D001261 ORTHO05D001130 8.1e-06 55.5 63 38.1
Aa31LG4G6230 Aethionema arabicum HOM05D001261 ORTHO05D001130 8.1e-06 55.5 100 33.0
ATR0751G203 Amborella trichopoda HOM05D001261 ORTHO05D001130 8.1e-06 55.5 258 23.3
CiPaw.12G142500 Carya illinoinensis HOM05D001261 ORTHO05D001130 8.1e-06 55.5 97 33.0
Duzib093G0420 Durio zibethinus HOM05D001261 ORTHO05D001130 8.1e-06 55.5 63 38.1
Glyma.04G020000 Glycine max HOM05D001261 ORTHO05D001130 8.1e-06 55.5 63 39.7
MD03G1042900 Malus domestica HOM05D001261 ORTHO05D001130 8.1e-06 55.5 90 35.6
Manes.05G204800 Manihot esculenta HOM05D001261 ORTHO05D001130 8.1e-06 55.5 266 24.4
Medtr1g116180 Medicago truncatula HOM05D001261 ORTHO05D001130 8.1e-06 55.5 91 30.8
QL02p013344 Quercus lobata HOM05D001261 ORTHO05D001130 8.1e-06 55.5 111 30.6
TPR.G38136 Trifolium pratense HOM05D001261 ORTHO05D001130 8.1e-06 55.5 63 38.1
TWI56G0846 Tripterygium wilfordii HOM05D001261 ORTHO05D001130 8.1e-06 55.5 63 39.7
TAR628G0748 Trochodendron aralioides HOM05D001261 ORTHO05D001130 8.1e-06 55.5 72 38.9
vmacro09799 Vaccinium macrocarpon HOM05D001261 ORTHO05D001130 8.1e-06 55.5 291 23.4
HPP92_009907 Vanilla planifolia HOM05D001261 ORTHO05D001130 8.1e-06 55.5 132 33.3


User provided reference genes

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