Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 3.0e-151 538.5 271 100.0
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 2.3e-143 512.3 271 95.6
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 8.6e-143 510.4 270 94.8
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 9.5e-142 506.9 270 94.8
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.8e-140 502.7 342 79.2
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.5e-139 499.6 269 91.8
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.3e-138 496.5 269 90.7
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 2.5e-134 482.3 272 89.0
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 1.2e-131 473.4 271 88.6
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.4e-129 466.5 271 85.2
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 9.3e-129 463.8 270 87.0
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 9.3e-129 463.8 272 85.7
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.2e-120 436.8 272 82.7
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.7e-120 435.6 271 79.3
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 3.5e-120 435.3 271 79.3
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 6.0e-120 434.5 271 82.7
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.9e-118 429.5 271 78.2
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 2.1e-117 426.0 271 79.3
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 6.2e-117 424.5 271 76.8
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.5e-115 419.9 271 77.1
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 3.4e-115 418.7 271 77.9
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.7e-114 416.4 271 76.0
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 1.7e-114 416.4 271 76.4
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 2.2e-114 416.0 271 76.4
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 3.8e-114 415.2 270 75.9
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 3.8e-114 415.2 273 77.3
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 6.4e-114 414.5 271 76.8
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 1.1e-113 413.7 273 75.8
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 1.4e-113 413.3 274 76.3
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.9e-113 412.9 281 74.7
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 3.2e-113 412.1 273 75.5
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 4.2e-113 411.8 271 76.4
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 5.5e-113 411.4 273 77.7
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.2e-112 410.2 272 75.4
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.5e-112 408.7 272 76.8
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 6.0e-112 407.9 270 75.2
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.3e-111 406.8 272 75.4
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.8e-111 406.4 272 75.7
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.8e-111 406.4 272 74.6
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 3.0e-111 405.6 272 73.9
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 5.1e-111 404.8 270 76.3
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 6.7e-111 404.4 273 74.7
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 8.7e-111 404.1 270 75.6
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 8.7e-111 404.1 271 74.9
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.5e-110 403.3 272 74.6
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.5e-110 403.3 272 74.6
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.9e-110 402.9 271 73.8
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.9e-110 402.9 271 74.5
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 4.3e-110 401.7 272 73.9
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 4.3e-110 401.7 272 75.7
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 4.3e-110 401.7 297 71.4
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 5.6e-110 401.4 271 73.4
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 7.4e-110 401.0 271 73.1
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.8e-109 399.1 271 74.2
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 4.8e-109 398.3 270 73.0
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 6.2e-109 397.9 271 73.4
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 6.2e-109 397.9 283 72.1
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 1.4e-108 396.7 271 73.1
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.4e-108 396.7 271 73.4
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 1.8e-108 396.4 270 73.3
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.8e-108 396.4 270 73.0
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.8e-108 396.4 284 71.5
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 4.0e-108 395.2 270 73.3
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 5.3e-108 394.8 270 73.3
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 6.9e-108 394.4 270 72.6
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.2e-107 393.7 273 74.7
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.0e-106 390.6 271 72.3
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.0e-106 390.6 271 72.3
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 1.7e-106 389.8 273 73.6
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 1.7e-106 389.8 273 73.6
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 6.5e-106 387.9 271 73.1
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.4e-105 386.7 330 62.1
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.5e-105 384.8 271 72.3
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 7.1e-105 384.4 284 68.7
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 9.3e-105 384.0 271 70.5
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 1.2e-104 383.6 272 70.6
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.2e-104 383.6 271 72.3
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.2e-104 383.6 271 70.8
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 3.5e-104 382.1 271 71.6
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.6e-104 381.7 271 70.5
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 4.6e-104 381.7 271 70.5
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 6.0e-104 381.3 272 70.6
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.0e-103 380.6 306 65.0
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.0e-103 380.6 306 65.0
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.3e-103 380.2 271 70.8
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.3e-103 380.2 273 72.2
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 2.3e-103 379.4 271 71.2
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 3.9e-103 378.6 257 74.7
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.1e-102 377.1 274 70.1
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 1.9e-102 376.3 271 70.5
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 2.5e-102 375.9 271 70.5
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 9.7e-102 374.0 271 70.1
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 2.2e-101 372.9 271 69.0
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 3.7e-101 372.1 293 63.8
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.7e-101 372.1 266 71.8
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 1.8e-100 369.8 273 70.0
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 3.1e-100 369.0 296 64.5
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 4.1e-100 368.6 274 70.8
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 5.3e-100 368.2 273 68.5
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 6.9e-100 367.9 271 70.5
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 2.6e-99 365.9 254 71.7
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.5e-99 365.2 287 66.9
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 2.2e-98 362.8 273 69.2
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 8.5e-98 360.9 277 67.9
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.1e-97 360.5 271 67.5
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 2.5e-97 359.4 273 68.5
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 5.5e-97 358.2 262 70.2
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 7.2e-97 357.8 237 75.9
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 1.6e-96 356.7 272 68.0
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 3.0e-95 352.4 270 65.9
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 3.9e-95 352.1 273 68.9
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.3e-93 347.1 277 69.0
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.8e-93 345.9 274 66.8
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.4e-92 342.8 274 66.4
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 3.4e-91 339.0 314 57.6
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 7.7e-91 337.8 235 71.5
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.2e-90 336.3 272 63.6
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 6.5e-90 334.7 230 71.7
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.1e-89 334.0 231 71.4
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.1e-89 334.0 332 56.3
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 5.5e-89 331.6 275 64.4
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.3e-87 326.2 231 71.0
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 3.0e-87 325.9 232 70.7
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 2.2e-85 319.7 268 61.9
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.4e-84 317.0 272 61.8
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.3e-84 315.1 232 69.8
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 2.0e-83 313.2 279 63.1
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 2.6e-83 312.8 231 68.8
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 3.2e-81 305.8 263 62.7
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 4.2e-81 305.4 356 52.2
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 2.7e-80 302.8 232 67.7
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.9e-79 298.9 285 58.9
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 3.9e-79 298.9 172 86.6
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 3.1e-76 289.3 271 59.4
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 9.1e-76 287.7 196 72.4
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 2.6e-75 286.2 234 65.4
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 2.5e-73 279.6 268 55.6
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 3.3e-70 269.2 173 74.6
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.7e-69 265.8 176 77.3
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.2e-67 260.8 268 54.5
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 4.5e-67 258.8 275 50.9
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 2.2e-66 256.5 230 59.6
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 2.7e-64 249.6 232 58.2
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.8e-63 246.9 263 52.5
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 5.7e-62 241.9 202 63.9
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 8.3e-61 238.0 261 49.8
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 3.1e-60 236.1 161 72.0
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 5.4e-60 235.3 182 67.6
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 9.1e-60 234.6 264 50.4
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.7e-58 230.3 261 47.9
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.9e-57 226.9 174 64.9
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 5.7e-54 215.3 163 68.1
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.7e-53 213.8 160 66.2
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 7.0e-52 208.4 131 76.3
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 7.8e-51 204.9 169 63.9
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 2.3e-50 203.4 214 53.7
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 6.6e-50 201.8 255 47.8
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 1.5e-49 200.7 151 66.2
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 2.3e-47 193.4 259 45.9
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 3.5e-43 179.5 151 63.6
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.3e-42 176.8 125 68.8
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.6e-41 172.2 198 50.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 5.2e-39 165.6 232 41.8
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 3.7e-37 159.5 138 60.9
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 3.7e-37 159.5 174 52.9
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 5.6e-33 145.6 272 39.3
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.1e-31 141.4 183 45.4
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.8e-30 135.6 164 48.8
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 4.9e-29 132.5 91 71.4
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 1.1e-28 131.3 88 75.0
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 5.1e-26 122.5 151 51.0
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.1e-23 113.2 71 73.2
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 6.8e-23 112.1 74 71.6
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 2.7e-19 100.1 239 32.6
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 8.7e-18 95.1 74 63.5
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.2e-16 91.3 67 64.2
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.9e-10 69.7 138 37.7
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 5.6e-09 65.9 175 33.1
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 2.8e-08 63.5 44 68.2
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 6.2e-08 62.4 42 73.8
Medtr3g063430 Medicago truncatula HOM05D001715 ORTHO05D259122 6.2e-08 62.4 38 76.3
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.8e-07 60.8 34 88.2


User provided reference genes

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