Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 0.0e+00 1560.4 840 100.0
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 0.0e+00 1312.4 846 85.2
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 0.0e+00 1286.2 849 80.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1270.8 848 79.2
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 0.0e+00 1258.4 848 79.0
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1235.3 849 79.7
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 0.0e+00 1208.0 851 78.6
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 0.0e+00 1204.1 852 75.8
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 0.0e+00 1193.3 844 79.1
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 0.0e+00 1146.7 851 74.9
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 0.0e+00 1125.9 851 74.1
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1112.4 851 72.4
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 0.0e+00 1112.1 852 71.8
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 0.0e+00 1089.7 854 72.1
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 0.0e+00 1085.9 854 70.3
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1077.0 853 72.0
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 5.0e-306 1054.3 848 67.5
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 2.7e-304 1048.5 848 67.1
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 2.0e-302 1042.3 868 70.3
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 8.2e-301 1036.9 858 67.9
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 8.0e-296 1020.4 848 65.9
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.8e-295 1019.2 856 65.5
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.9e-295 1018.1 849 67.8
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 9.7e-294 1013.4 874 68.9
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 7.0e-292 1007.3 848 65.7
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 6.5e-290 1000.7 857 65.9
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 3.0e-287 991.9 856 66.2
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.2e-287 991.1 848 65.1
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.5e-286 989.6 866 65.7
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 6.3e-285 984.2 849 64.2
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.2e-283 979.9 851 66.2
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.3e-282 976.5 840 64.9
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.7e-282 976.1 850 62.7
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 2.9e-282 975.3 858 64.3
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.2e-280 969.9 855 63.3
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-280 969.5 849 62.9
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 1.6e-280 969.5 853 63.8
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.0e-279 966.8 841 65.0
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 3.0e-279 965.3 853 65.7
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.5e-278 963.0 849 62.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.7e-278 961.1 854 63.8
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 6.3e-277 957.6 884 61.4
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.0e-276 954.1 848 63.6
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 3.5e-275 951.8 856 62.6
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 5.0e-274 948.0 854 61.6
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.6e-267 926.4 849 63.5
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.1e-265 920.2 858 61.8
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.8e-264 915.6 827 62.6
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 4.4e-262 908.3 758 65.6
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 6.4e-261 904.4 758 66.8
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 2.7e-259 899.0 590 81.2
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 2.3e-258 896.0 810 63.1
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.9e-253 879.0 854 61.7
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 1.3e-250 870.2 852 59.4
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.7e-245 853.2 861 56.4
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 2.2e-245 852.8 861 56.3
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 3.2e-244 849.0 849 57.4
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.5e-241 839.3 871 59.5
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 3.1e-239 832.4 908 52.9
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.0e-239 832.0 899 55.6
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 8.4e-237 824.3 856 56.2
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 4.0e-231 805.4 861 54.9
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 9.3e-228 794.3 857 55.5
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.1e-227 793.1 914 52.8
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 3.0e-226 789.3 1009 50.3
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.4e-223 779.6 858 56.5
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 9.0e-223 777.7 842 54.6
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.2e-222 777.3 961 51.7
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 6.4e-221 771.5 880 52.7
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 3.2e-220 769.2 727 61.6
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 3.3e-217 759.2 865 53.1
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.1e-216 756.5 843 53.6
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 2.1e-216 756.5 816 55.1
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 6.2e-216 755.0 960 49.3
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 5.8e-214 748.4 959 50.4
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.3e-213 747.3 870 52.1
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.1e-211 740.0 860 53.3
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.6e-208 730.3 970 48.6
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 6.2e-208 728.4 962 48.5
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.8e-207 726.9 793 55.2
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.9e-204 716.8 846 51.4
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.9e-204 716.8 1071 45.7
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 4.6e-203 712.2 848 54.6
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 6.1e-203 711.8 848 51.5
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 3.0e-202 709.5 575 66.4
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.4e-199 700.7 851 51.9
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.4e-199 699.9 860 49.7
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 9.0e-199 698.0 950 48.1
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 9.0e-199 698.0 860 52.1
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 2.0e-198 696.8 483 75.6
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 2.6e-198 696.4 943 47.7
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 5.9e-198 695.3 972 47.3
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 7.7e-198 694.9 959 47.7
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 6.5e-197 691.8 948 47.7
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.4e-194 684.1 826 51.7
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 6.7e-194 681.8 867 50.2
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.3e-193 679.1 849 49.5
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.5e-190 670.6 946 49.8
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 2.2e-189 666.8 929 49.7
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 2.7e-187 659.8 838 48.6
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.8e-184 649.8 667 57.7
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 6.3e-184 648.7 851 50.6
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.4e-183 647.5 843 52.1
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 7.0e-183 645.2 847 49.1
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.8e-178 630.6 871 48.5
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.1e-177 627.9 867 46.9
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.7e-168 597.4 428 70.8
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 7.7e-166 588.6 397 75.3
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.3e-160 571.2 696 50.6
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.2e-160 570.5 371 77.1
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.0e-158 563.9 358 77.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.5e-156 557.8 1119 39.7
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.6e-155 553.1 371 75.2
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 2.0e-142 510.8 421 62.9
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 7.8e-142 508.8 375 70.1
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.9e-140 504.2 427 64.2
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 4.3e-140 503.1 462 60.2
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 3.6e-139 500.0 359 68.8
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 5.2e-138 496.1 840 42.4
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 7.5e-137 492.3 394 66.0
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.2e-135 486.9 495 54.5
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.6e-134 484.6 369 67.2
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 5.6e-132 476.1 629 49.4
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 2.8e-131 473.8 391 65.0
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.4e-128 462.2 683 44.8
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 7.1e-127 459.1 297 76.1
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 2.7e-126 457.2 331 71.0
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.5e-124 451.4 376 61.4
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 8.1e-123 445.7 384 63.0
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.4e-119 434.9 487 54.2
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.3e-117 428.3 513 48.1
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 7.3e-116 422.5 274 75.9
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 4.5e-113 413.3 498 49.6
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.2e-111 407.1 577 44.5
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 8.7e-109 399.1 452 49.1
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 5.6e-108 396.4 709 38.8
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 1.1e-103 382.1 476 49.2
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.2e-102 378.6 486 46.7
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 6.2e-99 366.3 485 46.6
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-94 352.1 257 73.5
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 2.3e-93 347.8 385 54.8
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 3.3e-92 344.0 502 45.6
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 4.8e-91 340.1 500 45.8
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 1.0e-85 322.4 485 44.1
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.3e-85 321.2 188 84.0
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 3.3e-84 317.4 410 46.1
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-83 315.5 374 51.3
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 7.7e-81 306.2 604 46.2
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.6e-78 297.4 638 36.1
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.1e-78 296.6 268 59.7
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 5.1e-77 293.5 413 41.4
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.2e-72 278.1 499 43.1
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.4e-71 275.4 197 68.0
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 1.4e-69 268.9 213 67.6
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.9e-69 267.3 181 71.8
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.5e-68 265.4 437 42.1
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.6e-62 244.2 483 40.8
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 9.1e-58 229.6 387 36.4
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 4.5e-57 227.3 183 66.1
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 5.0e-56 223.8 151 72.2
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 4.2e-55 220.7 491 37.9
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 3.6e-54 217.6 312 38.8
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 2.2e-51 208.4 201 58.2
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 2.8e-46 191.4 378 35.4
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.3e-45 188.3 101 90.1
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 2.3e-45 188.3 148 62.8
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.7e-40 172.2 331 35.6
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 1.5e-36 159.1 86 83.7
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 5.4e-26 124.0 75 90.7
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 1.9e-23 115.5 63 85.7
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.8e-21 109.0 65 81.5
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 3.4e-20 104.8 120 51.7
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.7e-19 102.4 53 86.8
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.9e-19 100.9 126 50.8
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.9e-18 99.0 65 73.8
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 9.9e-12 76.6 60 63.3
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 4.9e-11 74.3 52 71.2
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.4e-10 70.9 39 89.7
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 3.5e-09 68.2 35 82.9
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.5e-07 62.0 46 67.4
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.3e-07 60.5 56 60.7


User provided reference genes

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