Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.5e-75 286.2 142 100.0
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 4.2e-65 251.5 139 90.6
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 5.5e-41 171.4 126 69.0
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 1.0e-39 167.2 136 63.2
TPR.G19130 Trifolium pratense HOM05D000651 ORTHO05D003990 2.6e-38 162.5 126 67.5
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 1.4e-36 156.8 131 61.1
TPR.G32510 Trifolium pratense HOM05D000651 ORTHO05D003990 5.9e-35 151.4 137 61.3
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 8.6e-34 147.5 136 57.4
Medtr7g106530 Medicago truncatula HOM05D000651 ORTHO05D003990 1.7e-29 133.3 125 53.6
TPR.G19120 Trifolium pratense HOM05D000651 ORTHO05D003990 4.9e-29 131.7 114 63.2
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 3.2e-28 129.0 122 56.6
Medtr4g019680 Medicago truncatula HOM05D000651 ORTHO05D003990 5.4e-28 128.3 125 53.6
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 2.7e-27 125.9 127 52.0
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 1.0e-26 124.0 122 54.1
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 3.0e-26 122.5 122 53.3
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 1.9e-25 119.8 122 52.5
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 3.3e-25 119.0 119 52.1
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 7.3e-25 117.9 122 51.6
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 3.6e-24 115.5 122 50.8
Lalb_Chr05g0219531 Lupinus albus HOM05D000651 ORTHO05D003990 2.3e-23 112.8 142 43.7
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 5.2e-23 111.7 131 47.3
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 5.8e-22 108.2 126 46.0
Manes.17G077833 Manihot esculenta HOM05D000651 ORTHO05D003990 2.2e-21 106.3 130 45.4
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 1.4e-20 103.6 131 48.9
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 3.2e-20 102.4 125 48.0
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 4.1e-20 102.1 117 46.2
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 9.2e-20 100.9 97 49.5
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 1.2e-19 100.5 117 47.9
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 1.6e-19 100.1 89 53.9
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 1.6e-19 100.1 122 43.4
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 2.0e-19 99.8 94 52.1
TPR.G19124 Trifolium pratense HOM05D000651 ORTHO05D003990 2.0e-19 99.8 71 69.0
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.5e-19 99.0 119 44.5
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.5e-19 99.0 119 44.5
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 6.0e-19 98.2 89 52.8
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 7.8e-19 97.8 125 41.6
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 1.0e-18 97.4 126 45.2
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 1.0e-18 97.4 94 51.1
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 1.3e-18 97.1 124 43.5
Lsat_1_v5_gn_3_55361 Lactuca sativa HOM05D000651 ORTHO05D003990 1.3e-18 97.1 121 45.5
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.7e-18 96.7 89 51.7
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 2.3e-18 96.3 126 44.4
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 3.0e-18 95.9 125 41.6
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 3.0e-18 95.9 124 43.5
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 6.6e-18 94.7 89 50.6
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 8.6e-18 94.4 101 49.5
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 1.1e-17 94.0 117 45.3
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 1.1e-17 94.0 129 41.9
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.9e-17 93.2 89 50.6
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 2.5e-17 92.8 125 45.6
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 2.5e-17 92.8 118 46.6
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 9.5e-17 90.9 122 41.0
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 9.5e-17 90.9 124 43.5
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 1.2e-16 90.5 92 50.0
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 1.6e-16 90.1 99 47.5
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 2.1e-16 89.7 71 59.2
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.8e-16 89.4 96 49.0
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 3.6e-16 89.0 92 45.7
AUR62038169 Chenopodium quinoa HOM05D008822 ORTHO05D003990 4.7e-16 88.6 108 44.4
vmacro00413 Vaccinium macrocarpon HOM05D008822 ORTHO05D003990 6.2e-16 88.2 94 47.9
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 1.1e-15 87.4 106 45.3
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 1.1e-15 87.4 116 38.8
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.1e-15 87.4 126 42.9
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 1.4e-15 87.0 90 47.8
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 1.4e-15 87.0 117 39.3
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 1.8e-15 86.7 123 42.3
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.3e-15 86.3 118 44.1
AUR62038081 Chenopodium quinoa HOM05D000294 ORTHO05D003990 3.1e-15 85.9 108 45.4
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 3.1e-15 85.9 126 42.1
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 4.0e-15 85.5 116 42.2
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 5.2e-15 85.1 101 47.5
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 6.8e-15 84.7 107 42.1
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 1.2e-14 84.0 74 52.7
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 1.2e-14 84.0 122 38.5
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 1.5e-14 83.6 125 42.4
CANSAT35G0183 Cannabis sativa HOM05D008822 ORTHO05D003990 2.0e-14 83.2 79 53.2
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 2.0e-14 83.2 122 36.9
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 2.0e-14 83.2 122 36.9
TPR.G32483 Trifolium pratense HOM05D000651 ORTHO05D003990 2.0e-14 83.2 63 68.3
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 2.6e-14 82.8 129 38.0
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 4.4e-14 82.0 128 37.5
Ca_18736_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 7.5e-14 81.3 62 64.5
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 7.5e-14 81.3 125 40.8
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 7.5e-14 81.3 125 40.8
arahy.Tifrunner.gnm1.ann1.FQ9DWZ Arachis hypogaea HOM05D000651 ORTHO05D003990 9.8e-14 80.9 76 56.6
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 1.3e-13 80.5 92 42.4
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 1.7e-13 80.1 75 53.3
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 2.2e-13 79.7 121 38.0
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 2.9e-13 79.3 117 38.5
TWI79G0768 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 3.7e-13 79.0 82 50.0
Aa31LG3G17790 Aethionema arabicum HOM05D008822 ORTHO05D003990 8.3e-13 77.8 72 52.8
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 8.3e-13 77.8 87 46.0
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 1.1e-12 77.4 98 40.8
SalBow8G0982 Salvia bowleyana HOM05D008822 ORTHO05D003990 1.1e-12 77.4 110 39.1
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 1.4e-12 77.0 67 58.2
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 1.4e-12 77.0 104 39.4
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 1.4e-12 77.0 98 41.8
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 1.4e-12 77.0 72 52.8
Aqoxy7G03756 Aquilegia oxysepala HOM05D000294 ORTHO05D003990 1.9e-12 76.6 126 38.9
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.9e-12 76.6 94 45.7
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 2.4e-12 76.3 89 41.6
GSVIVG01011748001 Vitis vinifera HOM05D008822 ORTHO05D003990 3.2e-12 75.9 116 37.1
arahy.Tifrunner.gnm1.ann1.ZQQT14 Arachis hypogaea HOM05D000651 ORTHO05D003990 4.1e-12 75.5 63 58.7
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 4.1e-12 75.5 91 45.1
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 5.4e-12 75.1 90 44.4
DCAR_007300 Daucus carota HOM05D002189 ORTHO05D002233 5.4e-12 75.1 106 41.5
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 5.4e-12 75.1 124 35.5
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 7.1e-12 74.7 124 36.3
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 7.1e-12 74.7 93 41.9
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 7.1e-12 74.7 72 50.0
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 7.1e-12 74.7 72 50.0
Thhalv10015336m.g Eutrema salsugineum HOM05D008822 ORTHO05D003990 9.2e-12 74.3 69 52.2
AT5G08780 Arabidopsis thaliana HOM05D008822 ORTHO05D003990 1.2e-11 73.9 77 49.4
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 1.2e-11 73.9 87 47.1
Dinv14425 Davidia involucrata HOM05D008822 ORTHO05D003990 1.2e-11 73.9 65 56.9
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 1.2e-11 73.9 72 48.6
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 2.1e-11 73.2 66 56.1
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 2.1e-11 73.2 66 56.1
FAN17G1493 Fragaria x ananassa HOM05D000137 ORTHO05D000503 2.1e-11 73.2 97 39.2
Lsat_1_v5_gn_3_55381 Lactuca sativa HOM05D008822 ORTHO05D003990 2.1e-11 73.2 91 45.1
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 2.1e-11 73.2 93 41.9
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 2.7e-11 72.8 67 52.2
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.7e-11 72.8 72 48.6
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 2.7e-11 72.8 72 48.6
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 3.5e-11 72.4 99 40.4
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 3.5e-11 72.4 72 47.2
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 4.6e-11 72.0 120 35.0
C09p68200 Brassica napus HOM05D008822 ORTHO05D003990 7.8e-11 71.2 63 54.0
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 7.8e-11 71.2 73 46.6
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 7.8e-11 71.2 72 47.2
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 1.0e-10 70.9 72 47.2
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 1.7e-10 70.1 72 47.2
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 3.0e-10 69.3 72 45.8
PSO017G3155 Papaver somniferum HOM05D008822 ORTHO05D003990 8.6e-10 67.8 98 38.8
Carub.0006s0775 Capsella rubella HOM05D008822 ORTHO05D003990 1.1e-09 67.4 63 54.0
Migut.L00358 Erythranthe guttata HOM05D000651 ORTHO05D003990 1.5e-09 67.0 63 52.4
arahy.Tifrunner.gnm1.ann1.F0QMSU Arachis hypogaea HOM05D000651 ORTHO05D003990 3.3e-09 65.9 63 54.0
DCAR_030223 Daucus carota HOM05D017778 ORTHO05D003990 3.3e-09 65.9 152 29.6
HanXRQChr15g0476841 Helianthus annuus HOM05D008822 ORTHO05D003990 4.3e-09 65.5 92 41.3
QL10p028121 Quercus lobata HOM05D008822 ORTHO05D003990 4.3e-09 65.5 69 47.8
Oeu003381.1 Olea europaea HOM05D000651 ORTHO05D003990 5.6e-09 65.1 63 55.6
Prupe.1G325800 Prunus persica HOM05D021888 ORTHO05D003990 5.6e-09 65.1 63 55.6
arahy.Tifrunner.gnm1.ann1.UQR3KX Arachis hypogaea HOM05D000651 ORTHO05D003990 7.3e-09 64.7 68 45.6
arahy.Tifrunner.gnm1.ann1.UZQ5G1 Arachis hypogaea HOM05D000651 ORTHO05D003990 1.6e-08 63.5 137 33.6
Cpa.g.sc37.25 Carica papaya HOM05D008822 ORTHO05D003990 2.1e-08 63.2 79 45.6
Nn4g24185 Nelumbo nucifera HOM05D008822 ORTHO05D003990 2.1e-08 63.2 119 34.5
DCAR_014730 Daucus carota HOM05D003305 ORTHO05D001298 2.8e-08 62.8 85 42.4
Solyc11g013680.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.8e-08 62.8 73 42.5
Oeu045858.1 Olea europaea HOM05D008822 ORTHO05D003990 3.6e-08 62.4 63 52.4
Sed0005667 Sechium edule HOM05D021888 ORTHO05D003990 3.6e-08 62.4 61 49.2
EL10As3g23335 Beta vulgaris HOM05D000294 ORTHO05D000177 6.2e-08 61.6 66 51.5
Ah.13g073970 Amaranthus hybridus HOM05D000294 ORTHO05D003990 8.1e-08 61.2 82 39.0
Cpa.g.sc37.24 Carica papaya HOM05D008822 ORTHO05D003990 8.1e-08 61.2 84 42.9
Potri.005G069700 Populus trichocarpa HOM05D008822 ORTHO05D050460 1.1e-07 60.8 73 43.8
MBI19_g32901_MAGBIO Magnolia biondii HOM05D008822 ORTHO05D003990 2.3e-07 59.7 56 50.0
Lsat_1_v5_gn_2_12280 Lactuca sativa HOM05D003305 ORTHO05D001298 4.0e-07 58.9 66 45.5
ECA238G4031 Erigeron canadensis HOM05D003305 ORTHO05D001298 6.8e-07 58.2 82 37.8
Nn4g24189 Nelumbo nucifera HOM05D003305 ORTHO05D001298 8.9e-07 57.8 90 37.8
Prupe.5G231500 Prunus persica HOM05D008822 ORTHO05D003990 1.2e-06 57.4 73 45.2
Solyc11g013600.2 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.2e-06 57.4 72 43.1
Zm00001eb179440 Zea mays HOM05D002447 ORTHO05D001298 1.2e-06 57.4 66 39.4
Aqoxy3G02485 Aquilegia oxysepala HOM05D000651 ORTHO05D003990 1.5e-06 57.0 71 38.0
DCAR_015823 Daucus carota HOM05D008822 ORTHO05D003990 1.5e-06 57.0 63 44.4
MD14G1235000 Malus domestica HOM05D003305 ORTHO05D001298 1.5e-06 57.0 66 45.5
Atru.chr12.1001 Acer truncatum HOM05D008822 ORTHO05D003990 2.0e-06 56.6 63 46.0
Lj4g0004392 Lotus japonicus HOM05D003305 ORTHO05D001298 2.0e-06 56.6 68 45.6
SalBow1G4743 Salvia bowleyana HOM05D003305 ORTHO05D001298 2.0e-06 56.6 77 41.6
HanXRQChr08g0221451 Helianthus annuus HOM05D003305 ORTHO05D001298 2.6e-06 56.2 76 42.1
GSVIVG01011701001 Vitis vinifera HOM05D002447 ORTHO05D001298 3.4e-06 55.8 63 47.6
Os08g0428800 Oryza sativa ssp. japonica HOM05D002447 ORTHO05D001298 4.4e-06 55.5 69 42.0
BcaC08g43068 Brassica carinata HOM05D003305 ORTHO05D001298 5.8e-06 55.1 87 41.4
C06p03260 Brassica napus HOM05D003305 ORTHO05D001298 5.8e-06 55.1 87 41.4
BolC6t35458H Brassica oleracea HOM05D003305 ORTHO05D001298 5.8e-06 55.1 87 41.4
Haze_14260 Corylus avellana HOM05D002447 ORTHO05D001298 5.8e-06 55.1 63 47.6
Glyma.11G216300 Glycine max HOM05D002447 ORTHO05D001298 5.8e-06 55.1 66 45.5
Sc05g0000880 Simmondsia chinensis HOM05D001085 ORTHO05D000895 5.8e-06 55.1 84 39.3
Aqoxy3G04208 Aquilegia oxysepala HOM05D032976 ORTHO05D003990 7.6e-06 54.7 79 35.4
Phvul.002G328400 Phaseolus vulgaris HOM05D003305 ORTHO05D001298 7.6e-06 54.7 56 48.2
ECA233G5128 Erigeron canadensis HOM05D000080 ORTHO05D000053 9.9e-06 54.3 77 39.0
MD17G1258400 Malus domestica HOM05D002447 ORTHO05D001298 9.9e-06 54.3 66 42.4
TWI74G0932 Tripterygium wilfordii HOM05D002447 ORTHO05D001298 9.9e-06 54.3 76 43.4


User provided reference genes

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