Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 0.0e+00 1338.6 946 100.0
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 0.0e+00 1214.1 945 90.9
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 0.0e+00 1207.6 944 90.9
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 0.0e+00 1186.8 946 90.8
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 0.0e+00 1146.7 946 85.0
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 0.0e+00 1143.3 946 87.3
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 0.0e+00 1132.9 947 88.3
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 0.0e+00 1101.7 946 85.5
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 0.0e+00 1096.6 948 84.6
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 4.1e-309 1064.7 950 83.3
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 3.0e-307 1058.5 990 80.5
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 1.1e-296 1023.5 946 82.6
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 9.3e-285 983.8 943 78.6
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 6.7e-283 977.6 943 78.0
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.1e-282 976.9 938 78.4
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 5.6e-282 974.5 938 78.5
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 2.4e-280 969.1 942 78.7
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 2.5e-274 949.1 951 76.3
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 7.4e-274 947.6 948 74.9
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 1.3e-273 946.8 952 76.2
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 4.8e-273 944.9 948 76.5
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 4.1e-272 941.8 945 76.6
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 4.1e-272 941.8 943 76.5
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 5.3e-272 941.4 943 76.7
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 2.0e-271 939.5 937 77.6
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 2.0e-271 939.5 926 78.0
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.4e-269 933.3 967 72.2
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 3.9e-267 925.2 957 74.6
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 4.8e-265 918.3 945 76.0
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 1.8e-264 916.4 953 74.8
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 9.0e-264 914.1 944 74.9
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 1.7e-262 909.8 951 75.0
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 8.5e-262 907.5 951 75.0
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 2.5e-261 906.0 952 74.2
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 7.2e-261 904.4 953 74.4
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 7.2e-261 904.4 1109 66.8
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 1.0e-259 900.6 942 64.4
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 1.8e-259 899.8 991 59.3
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 2.0e-258 896.3 955 73.3
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 2.5e-258 896.0 955 70.7
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 2.8e-257 892.5 943 74.0
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 2.8e-257 892.5 954 73.3
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 1.1e-256 890.6 937 72.5
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 1.1e-256 890.6 950 73.6
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 1.8e-256 889.8 938 74.2
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.9e-256 887.9 943 73.7
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 2.0e-255 886.3 941 62.6
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 1.1e-253 880.6 940 73.9
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 4.2e-253 878.6 950 65.6
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 4.2e-253 878.6 952 73.8
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 9.4e-253 877.5 945 73.1
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.1e-250 870.5 951 70.2
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.3e-249 867.1 941 73.0
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 1.7e-249 866.7 938 73.6
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 6.3e-249 864.8 937 73.4
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 8.2e-249 864.4 956 72.3
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.8e-248 863.2 956 72.4
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 5.3e-248 861.7 940 72.9
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 7.0e-248 861.3 956 72.3
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.5e-247 860.1 956 72.1
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 2.6e-247 859.4 937 69.8
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.5e-247 859.0 956 72.2
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 5.9e-247 858.2 932 66.7
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 2.9e-246 855.9 944 72.2
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 8.5e-246 854.4 940 72.6
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 2.7e-244 849.4 951 71.7
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 8.0e-244 847.8 947 69.1
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 8.0e-244 847.8 942 70.2
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 1.0e-243 847.4 950 69.9
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 6.7e-243 844.7 951 70.5
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 8.2e-241 837.8 941 71.8
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 8.2e-241 837.8 937 72.6
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 1.1e-240 837.4 933 72.3
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 5.3e-240 835.1 943 68.6
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 1.6e-239 833.6 932 72.6
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 3.5e-239 832.4 953 70.4
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 5.0e-238 828.6 958 69.5
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 8.5e-238 827.8 956 60.9
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 7.2e-237 824.7 945 70.2
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 1.6e-236 823.5 960 58.8
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 2.1e-236 823.2 947 67.7
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 4.4e-234 815.5 942 72.0
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 1.3e-233 813.9 973 48.3
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 8.3e-233 811.2 942 71.7
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 1.1e-232 810.8 942 71.8
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 3.1e-232 809.3 942 71.5
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 9.1e-232 807.7 942 71.4
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 2.5e-229 799.7 951 69.6
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 9.8e-226 787.7 956 68.9
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 3.7e-225 785.8 737 73.5
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.4e-224 783.9 938 69.6
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.0e-222 777.7 895 72.1
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 3.6e-220 769.2 954 65.7
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 5.0e-214 748.8 821 77.8
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.2e-212 744.2 934 68.8
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 1.2e-210 737.6 957 67.4
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 2.4e-208 729.9 954 64.7
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 6.0e-207 725.3 867 70.7
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 3.9e-206 722.6 948 65.1
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 1.5e-205 720.7 934 63.5
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 5.8e-202 708.8 1022 58.3
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 5.6e-189 665.6 931 61.8
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.7e-182 644.0 880 65.0
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 4.9e-177 625.9 945 53.1
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 4.3e-173 612.8 729 63.5
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 3.5e-167 593.2 959 58.3
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 6.9e-163 578.9 959 56.9
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 3.7e-156 556.6 949 55.1
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 3.7e-156 556.6 949 55.1
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 1.7e-153 547.7 980 57.2
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 5.9e-146 522.7 934 56.0
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 5.0e-129 466.5 666 44.7
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 3.0e-118 430.6 306 79.7
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.7e-117 426.4 587 62.0
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 3.3e-104 384.0 944 49.7
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 2.3e-97 361.3 960 43.5
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 2.3e-94 351.3 596 38.6
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 4.0e-70 270.8 735 43.7
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 2.6e-61 241.5 481 36.0
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 3.5e-58 231.1 127 89.8
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 4.3e-56 224.2 125 88.0
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 3.1e-54 218.0 123 86.2
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 4.0e-54 217.6 127 85.8
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.4e-46 191.8 182 56.0
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 4.5e-37 161.0 91 85.7
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.9e-33 147.9 126 57.9
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.5e-32 146.0 188 46.3
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 5.7e-32 144.1 121 73.6
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 1.1e-27 129.8 77 85.7
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 4.2e-27 127.9 153 51.6
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 6.1e-26 124.0 77 76.6
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 2.4e-22 112.1 79 70.9
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 1.2e-18 99.8 63 82.5
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.6e-18 98.2 88 50.0
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.0e-17 96.7 92 52.2
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.6e-16 92.0 82 59.8
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 5.9e-13 80.9 55 70.9
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.0e-09 70.1 52 61.5
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 2.8e-07 62.0 56 55.4
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.8e-07 62.0 103 46.6
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 4.8e-07 61.2 200 27.5
BcaB01g03760 Brassica carinata HOM05D000526 ORTHO05D000956 6.3e-07 60.8 160 25.6
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 8.2e-07 60.5 202 29.7
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.4e-06 58.9 171 28.7
Nitab4.5_0005880g0030 Nicotiana tabacum HOM05D000526 ORTHO05D000956 4.1e-06 58.2 162 24.7
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 5.3e-06 57.8 171 28.7
QL10p018959 Quercus lobata HOM05D000526 ORTHO05D000956 7.0e-06 57.4 177 25.4
Zm00001eb258660 Zea mays HOM05D000836 ORTHO05D000709 7.0e-06 57.4 136 28.7


User provided reference genes

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