Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 1.7e-194 682.6 353 100.0
Medtr7g083810 Medicago truncatula HOM05D009313 ORTHO05D011011 5.1e-95 352.1 311 65.6
Psat3g094040 Pisum sativum HOM05D009313 ORTHO05D011011 3.4e-91 339.3 285 66.3
TPR.G17461 Trifolium pratense HOM05D009313 ORTHO05D011011 3.9e-87 325.9 287 65.5
Glyma.19G101300 Glycine max HOM05D009313 ORTHO05D011011 6.7e-87 325.1 288 65.6
Lj1g0004251 Lotus japonicus HOM05D009313 ORTHO05D011011 2.6e-75 286.6 288 60.4
Phvul.001G086400 Phaseolus vulgaris HOM05D009313 ORTHO05D011011 3.0e-63 246.5 297 53.5
Lalb_Chr22g0359871 Lupinus albus HOM05D009313 ORTHO05D011011 4.0e-63 246.1 268 56.3
VMungo1383G2680 Vigna mungo HOM05D009313 ORTHO05D011011 8.8e-63 245.0 283 56.2
Glyma.16G049900 Glycine max HOM05D009313 ORTHO05D011011 5.5e-49 199.1 248 52.0
arahy.Tifrunner.gnm1.ann1.GK0RAW Arachis hypogaea HOM05D009313 ORTHO05D011011 2.0e-46 190.7 288 44.4
arahy.Tifrunner.gnm1.ann1.TM67C6 Arachis hypogaea HOM05D009313 ORTHO05D011011 7.5e-46 188.7 289 45.0
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 7.5e-38 162.2 85 97.6
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 1.0e-34 151.8 85 88.2
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 1.1e-33 148.3 85 87.1
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 1.1e-33 148.3 85 87.1
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 2.0e-30 137.5 85 81.2
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 2.0e-30 137.5 85 80.0
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 5.8e-30 136.0 85 78.8
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 5.8e-30 136.0 85 78.8
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 1.3e-29 134.8 85 78.8
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 1.3e-29 134.8 85 78.8
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 3.7e-29 133.3 85 78.8
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 8.3e-29 132.1 85 78.8
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 1.1e-28 131.7 130 55.4
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.9e-28 131.0 101 65.3
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.9e-28 131.0 101 65.3
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 5.4e-28 129.4 85 76.5
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 5.4e-28 129.4 85 72.9
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 9.2e-28 128.6 85 72.9
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 2.0e-27 127.5 85 71.8
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 6.0e-27 125.9 85 71.8
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 7.8e-27 125.6 85 71.8
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 7.8e-27 125.6 85 70.6
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 1.3e-26 124.8 85 67.1
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 1.7e-26 124.4 85 71.8
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.3e-26 124.0 85 70.6
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.3e-26 124.0 85 70.6
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 3.0e-26 123.6 85 70.6
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.0e-26 123.6 82 73.2
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 5.0e-26 122.9 85 70.6
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 5.0e-26 122.9 85 67.1
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 5.0e-26 122.9 85 68.2
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 5.0e-26 122.9 101 60.4
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 6.6e-26 122.5 85 67.1
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 6.6e-26 122.5 85 69.4
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 8.6e-26 122.1 85 70.6
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 8.6e-26 122.1 85 67.1
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 8.6e-26 122.1 85 71.8
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.1e-25 121.7 85 68.2
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 1.1e-25 121.7 85 68.2
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 1.5e-25 121.3 85 68.2
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 1.9e-25 120.9 85 69.4
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.9e-25 120.9 85 67.1
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 1.9e-25 120.9 85 67.1
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 1.9e-25 120.9 85 67.1
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.9e-25 120.9 85 67.1
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 1.9e-25 120.9 85 67.1
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 2.5e-25 120.6 85 67.1
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 3.3e-25 120.2 85 67.1
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 4.3e-25 119.8 85 62.4
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 5.6e-25 119.4 85 65.9
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 7.3e-25 119.0 85 65.9
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 7.3e-25 119.0 85 65.9
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 9.5e-25 118.6 85 65.9
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 9.5e-25 118.6 85 64.7
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 9.5e-25 118.6 126 50.8
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 9.5e-25 118.6 85 69.4
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 1.2e-24 118.2 101 60.4
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 1.2e-24 118.2 85 67.1
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.6e-24 117.9 85 67.1
Psat4g194360 Pisum sativum HOM05D009313 ORTHO05D011011 2.8e-24 117.1 75 81.3
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 3.6e-24 116.7 85 64.7
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 3.6e-24 116.7 85 63.5
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 4.7e-24 116.3 85 67.1
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 4.7e-24 116.3 107 52.3
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 6.2e-24 115.9 85 63.5
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 1.1e-23 115.2 124 46.8
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 1.4e-23 114.8 85 63.5
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 1.4e-23 114.8 87 66.7
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 1.8e-23 114.4 85 65.9
Psat1g213240 Pisum sativum HOM05D009313 ORTHO05D011011 1.8e-23 114.4 100 63.0
Atru.chr6.2639 Acer truncatum HOM05D009313 ORTHO05D011011 2.3e-23 114.0 271 35.1
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 2.3e-23 114.0 85 62.4
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 2.3e-23 114.0 85 64.7
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 2.3e-23 114.0 85 60.0
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 2.3e-23 114.0 85 65.9
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 4.0e-23 113.2 84 63.1
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 4.0e-23 113.2 85 63.5
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 5.2e-23 112.8 85 63.5
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 8.9e-23 112.1 85 64.7
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.2e-22 111.7 85 64.7
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 2.0e-22 110.9 85 63.5
Thecc.04G045600 Theobroma cacao HOM05D009313 ORTHO05D011011 2.6e-22 110.5 290 34.8
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 3.4e-22 110.2 85 63.5
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 4.4e-22 109.8 85 57.6
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 5.8e-22 109.4 85 61.2
TWI34G0624 Tripterygium wilfordii HOM05D009313 ORTHO05D011011 5.8e-22 109.4 287 33.1
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 7.5e-22 109.0 85 61.2
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 9.9e-22 108.6 85 60.0
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 9.9e-22 108.6 85 60.0
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 9.9e-22 108.6 85 58.8
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 9.9e-22 108.6 85 58.8
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 1.3e-21 108.2 84 61.9
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 1.3e-21 108.2 85 60.0
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 1.3e-21 108.2 85 56.5
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 1.7e-21 107.8 85 56.5
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 2.9e-21 107.1 85 61.2
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 3.7e-21 106.7 85 61.2
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 4.9e-21 106.3 85 61.2
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 4.9e-21 106.3 85 61.2
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 6.4e-21 105.9 85 60.0
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 8.3e-21 105.5 85 60.0
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 1.4e-20 104.8 85 57.6
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 1.4e-20 104.8 85 60.0
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 1.9e-20 104.4 85 58.8
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 1.9e-20 104.4 85 58.8
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 1.9e-20 104.4 85 58.8
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 4.1e-20 103.2 85 57.6
Duzib187G0327 Durio zibethinus HOM05D009313 ORTHO05D011011 5.4e-20 102.8 289 32.2
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 1.2e-19 101.7 85 57.6
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 1.6e-19 101.3 85 54.1
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 1.6e-19 101.3 82 57.3
Gorai.001G273400 Gossypium raimondii HOM05D009313 ORTHO05D011011 2.1e-19 100.9 302 30.8
Gohir.A07G230300 Gossypium hirsutum HOM05D009313 ORTHO05D011011 7.8e-19 99.0 304 30.6
Gohir.D07G237500 Gossypium hirsutum HOM05D009313 ORTHO05D011011 7.8e-19 99.0 306 30.4
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 3.0e-18 97.1 85 51.8
TAR622G0278 Trochodendron aralioides HOM05D000592 ORTHO05D000900 1.1e-17 95.1 288 31.9
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 4.3e-17 93.2 85 50.6
Sabra16G0204400 Salix brachista HOM05D009313 ORTHO05D011011 5.6e-17 92.8 253 33.6
Potri.001G322200 Populus trichocarpa HOM05D009313 ORTHO05D011011 9.5e-17 92.0 286 32.2
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 4.7e-16 89.7 85 49.4
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 1.5e-14 84.7 129 38.0
CsaV3_3G027710 Cucumis sativus L. HOM05D042272 ORTHO05D011011 2.0e-14 84.3 287 30.7
ClCG05G012740 Citrullus lanatus HOM05D042272 ORTHO05D011011 4.4e-14 83.2 275 32.0
COL.COLO4_13346 Corchorus olitorius HOM05D009313 ORTHO05D011011 7.6e-14 82.4 320 29.7
Ciclev10016598m.g Citrus clementina HOM05D009313 ORTHO05D011011 1.7e-13 81.3 265 30.6
Manes.04G092100 Manihot esculenta HOM05D009313 ORTHO05D011011 2.9e-13 80.5 332 27.7
Nn3g16307 Nelumbo nucifera HOM05D000592 ORTHO05D000900 1.4e-12 78.2 273 29.3
MELO3C014809.2 Cucumis melo HOM05D042272 ORTHO05D011011 1.9e-12 77.8 270 30.0
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 9.2e-12 75.5 108 38.9
AUR62037838 Chenopodium quinoa HOM05D023748 ORTHO05D011011 1.6e-11 74.7 271 27.7
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 2.1e-11 74.3 199 33.7
CDE06G0447 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 1.1e-09 68.6 255 27.1
Ah.02g128930 Amaranthus hybridus HOM05D023748 ORTHO05D011011 3.3e-09 67.0 152 32.9
AUR62041077 Chenopodium quinoa HOM05D023748 ORTHO05D011011 7.3e-09 65.9 271 28.0
EL10Ac6g13386 Beta vulgaris HOM05D023748 ORTHO05D011011 1.2e-08 65.1 114 40.4
CDE02G0335 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 1.2e-08 65.1 244 27.9
Psat7g185280 Pisum sativum HOM05D013148 ORTHO05D011011 3.6e-08 63.5 47 68.1
Cfa009434 Carpinus fangiana HOM05D000592 ORTHO05D000900 5.2e-07 59.7 255 27.8
Thecc.02G194900 Theobroma cacao HOM05D000592 ORTHO05D000900 5.2e-07 59.7 300 26.0
Cpa.g.sc70.81 Carica papaya HOM05D009313 ORTHO05D011011 9.0e-07 58.9 263 29.7
Gorai.003G115900 Gossypium raimondii HOM05D009313 ORTHO05D011011 9.0e-07 58.9 81 46.9


User provided reference genes

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