Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 0.0e+00 1346.3 655 100.0
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 0.0e+00 1191.4 692 83.7
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 0.0e+00 1158.3 693 81.2
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 0.0e+00 1107.0 696 78.4
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.5e-302 1042.3 696 73.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 7.3e-297 1023.5 697 73.0
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 2.4e-292 1008.4 696 73.3
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.9e-289 998.8 695 71.1
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.5e-281 972.6 696 69.3
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.0e-274 949.9 695 68.3
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.2e-246 856.7 695 61.4
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 8.0e-243 844.0 700 60.3
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.1e-241 840.1 701 61.6
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.6e-241 839.0 700 60.1
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 3.3e-241 838.6 778 56.3
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 5.7e-241 837.8 697 62.3
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.1e-239 833.6 702 61.0
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 4.1e-239 831.6 699 60.1
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 4.1e-239 831.6 702 60.5
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.0e-239 830.9 694 59.8
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.6e-238 829.7 726 57.6
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 1.6e-238 829.7 703 60.9
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 7.7e-238 827.4 699 59.1
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.2e-237 825.9 694 59.7
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.8e-237 825.1 703 60.0
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.5e-236 823.2 698 60.5
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.0e-235 817.4 726 57.2
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 3.4e-233 812.0 702 60.5
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.4e-231 806.6 696 59.1
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 3.1e-231 805.4 748 56.3
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 5.9e-230 801.2 654 61.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.2e-229 799.3 701 58.8
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 6.5e-229 797.7 698 58.2
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 6.5e-229 797.7 697 58.8
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 8.5e-229 797.3 701 58.9
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.1e-228 797.0 708 57.2
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.9e-228 796.2 697 57.8
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.2e-227 793.5 699 57.4
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 4.7e-227 791.6 700 56.7
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.5e-225 786.6 700 56.9
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.6e-225 785.8 703 56.9
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 5.7e-225 784.6 701 56.9
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 1.3e-224 783.5 700 57.3
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 2.8e-224 782.3 703 57.2
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 8.3e-224 780.8 758 54.2
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.4e-223 780.0 684 58.8
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.6e-222 776.5 668 60.0
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 5.9e-222 774.6 700 55.9
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.3e-221 773.5 705 55.5
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.7e-221 773.1 701 56.1
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 6.6e-221 771.2 695 57.8
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 2.1e-219 766.1 699 56.7
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.4e-217 758.4 664 59.6
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 4.4e-217 758.4 700 54.6
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 2.2e-216 756.1 710 55.1
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 2.9e-216 755.7 701 55.9
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 3.7e-216 755.4 661 58.5
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 2.4e-215 752.7 711 54.6
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 4.1e-215 751.9 711 54.6
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.7e-214 749.2 702 52.4
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 2.7e-214 749.2 727 53.6
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.3e-213 746.1 699 55.2
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.9e-213 745.7 703 54.9
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 2.9e-213 745.7 698 55.2
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 3.9e-213 745.3 705 54.5
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 7.3e-212 741.1 752 51.9
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.6e-211 740.0 705 54.3
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.8e-211 739.2 700 54.6
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.3e-210 736.1 700 54.4
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 1.3e-208 730.3 732 52.9
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.7e-208 729.9 698 54.3
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 3.5e-206 722.2 697 53.1
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 8.6e-205 717.6 704 53.6
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.1e-204 717.2 683 55.5
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.0e-201 706.4 719 52.7
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.2e-198 697.2 706 52.3
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 2.1e-198 696.4 717 51.2
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.3e-197 693.7 723 50.6
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 5.6e-196 688.3 734 49.7
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 2.7e-190 669.5 704 50.0
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 3.5e-190 669.1 699 49.6
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 7.8e-190 667.9 653 55.3
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.3e-189 667.2 675 52.6
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.7e-189 666.8 668 50.9
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 2.1e-187 659.8 569 57.5
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 7.6e-185 651.4 655 52.5
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.2e-182 644.0 526 60.8
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.7e-182 642.9 697 50.5
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 2.0e-177 626.7 311 93.6
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 8.7e-173 611.3 557 57.6
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 3.3e-172 609.4 552 56.3
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 9.3e-167 591.3 460 63.0
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 3.8e-160 569.3 479 61.2
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-154 550.4 658 46.0
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.3e-152 544.3 732 40.8
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-150 537.7 658 45.9
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 2.2e-147 526.9 753 40.0
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 2.8e-147 526.6 555 51.4
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 9.0e-146 521.5 763 38.7
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-141 508.1 658 44.1
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 5.7e-140 502.3 478 55.6
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.4e-137 493.0 604 45.7
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 3.1e-130 469.9 276 78.6
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-126 457.6 668 41.5
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 3.0e-125 453.4 479 52.2
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 1.7e-123 447.6 359 66.6
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-121 439.5 653 40.1
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 6.8e-117 425.6 698 38.1
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.5e-112 408.7 479 44.7
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 3.6e-110 403.3 386 54.1
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 3.6e-110 403.3 386 54.1
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 2.1e-102 377.5 209 86.1
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.3e-99 365.5 563 39.8
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.4e-92 343.2 589 37.9
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.2e-83 314.3 397 42.8
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.2e-82 308.9 661 34.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.5e-79 300.8 574 35.5
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.3e-72 278.5 371 44.5
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 4.0e-69 266.9 365 40.5
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.3e-67 261.9 162 71.0
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.7e-67 261.5 298 50.3
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.7e-64 251.5 273 46.2
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 2.4e-61 241.1 211 58.8
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 2.4e-61 241.1 372 39.5
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.9e-61 239.6 467 36.8
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.3e-59 235.3 139 78.4
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.6e-55 219.2 189 55.0
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 4.0e-53 213.8 171 64.9
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.3e-48 198.0 168 66.1
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.7e-48 196.1 159 56.0
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.4e-43 179.5 163 58.9
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.6e-41 175.3 109 76.1
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 3.0e-40 171.0 350 33.4
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 3.9e-40 170.6 433 30.0
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.1e-37 162.5 111 68.5
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 3.1e-37 161.0 143 55.2
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 7.6e-36 156.4 107 71.0
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 5.0e-35 153.7 88 80.7
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 1.9e-34 151.8 105 68.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.2e-28 132.5 152 47.4
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.0e-24 119.4 84 69.0
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.8e-24 118.6 150 45.3
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 6.7e-24 116.7 86 64.0
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.1e-21 107.8 78 71.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 3.1e-21 107.8 84 61.9
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 5.0e-19 100.5 193 34.2
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 5.3e-13 80.5 64 59.4
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.2e-09 69.3 151 32.5
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 6.1e-09 67.0 72 48.6
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.7e-08 63.5 359 24.2


User provided reference genes

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