Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06750_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 2.3e-102 375.6 185 100.0
Ca_14040_v3 Cicer arietinum L. HOM05D004509 ORTHO05D005568 7.5e-21 104.8 70 72.9
Medtr3g007760 Medicago truncatula HOM05D004509 ORTHO05D005568 1.6e-18 97.1 67 70.1
Lalb_Chr04g0264311 Lupinus albus HOM05D004509 ORTHO05D005568 2.7e-18 96.3 57 78.9
Phvul.005G010300 Phaseolus vulgaris HOM05D004509 ORTHO05D005568 3.5e-18 95.9 67 68.7
Glyma.04G130500 Glycine max HOM05D004509 ORTHO05D005568 1.0e-17 94.4 67 68.7
Glyma.06G316600 Glycine max HOM05D004509 ORTHO05D005568 1.0e-17 94.4 67 68.7
Lj3g0006861 Lotus japonicus HOM05D004509 ORTHO05D005568 1.0e-17 94.4 57 75.4
Lalb_Chr18g0049081 Lupinus albus HOM05D004509 ORTHO05D005568 1.7e-17 93.6 57 77.2
Psat5g226800 Pisum sativum HOM05D004509 ORTHO05D005568 1.7e-17 93.6 57 75.4
Lalb_Chr15g0079611 Lupinus albus HOM05D004509 ORTHO05D005568 2.9e-17 92.8 57 75.4
TPR.G12300 Trifolium pratense HOM05D004509 ORTHO05D005568 3.8e-17 92.4 58 77.6
Manes.14G035800 Manihot esculenta HOM05D004509 ORTHO05D005568 2.5e-16 89.7 56 73.2
GSVIVG01018636001 Vitis vinifera HOM05D004509 ORTHO05D005568 3.2e-16 89.4 56 73.2
Cpa.g.sc3.319 Carica papaya HOM05D004509 ORTHO05D005568 4.2e-16 89.0 61 68.9
Cfa008172 Carpinus fangiana HOM05D004509 ORTHO05D005568 4.2e-16 89.0 61 67.2
CiPaw.03G093600 Carya illinoinensis HOM05D004509 ORTHO05D005568 4.2e-16 89.0 56 71.4
Ciclev10004605m.g Citrus clementina HOM05D004509 ORTHO05D005568 1.2e-15 87.4 56 69.6
CiPaw.04G060100 Carya illinoinensis HOM05D004509 ORTHO05D005568 1.6e-15 87.0 66 62.1
Prupe.2G277400 Prunus persica HOM05D004509 ORTHO05D005568 1.6e-15 87.0 61 67.2
arahy.Tifrunner.gnm1.ann1.4JD3YM Arachis hypogaea HOM05D004509 ORTHO05D005568 2.1e-15 86.7 69 63.8
Nn6g33992 Nelumbo nucifera HOM05D004509 ORTHO05D005568 2.7e-15 86.3 57 70.2
Duzib068G0492 Durio zibethinus HOM05D004509 ORTHO05D005568 3.6e-15 85.9 66 62.1
Dinv22949 Davidia involucrata HOM05D004509 ORTHO05D005568 4.7e-15 85.5 61 67.2
QL09p019881 Quercus lobata HOM05D004509 ORTHO05D005568 6.1e-15 85.1 56 69.6
Thecc.03G156200 Theobroma cacao HOM05D004509 ORTHO05D005568 8.0e-15 84.7 56 69.6
TAR375G0675 Trochodendron aralioides HOM05D004509 ORTHO05D005568 8.0e-15 84.7 54 70.4
Sed0019493 Sechium edule HOM05D004509 ORTHO05D005568 1.0e-14 84.3 58 65.5
Dinv28569 Davidia involucrata HOM05D004509 ORTHO05D005568 2.3e-14 83.2 61 63.9
Duzib205G0424 Durio zibethinus HOM05D004509 ORTHO05D005568 2.3e-14 83.2 56 67.9
Potri.001G124000 Populus trichocarpa HOM05D004509 ORTHO05D005568 2.3e-14 83.2 68 60.3
Sabra01G0095600 Salix brachista HOM05D004509 ORTHO05D005568 3.0e-14 82.8 68 58.8
Manes.06G135100 Manihot esculenta HOM05D004509 ORTHO05D005568 4.0e-14 82.4 56 69.6
Gohir.A12G198700 Gossypium hirsutum HOM05D004509 ORTHO05D005568 5.2e-14 82.0 56 67.9
Sc13g0007910 Simmondsia chinensis HOM05D004509 ORTHO05D005568 5.2e-14 82.0 61 62.3
FvH4_7g27570 Fragaria vesca HOM05D004509 ORTHO05D005568 6.8e-14 81.6 59 64.4
FAN01G2021 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.8e-14 81.6 59 64.4
FAN03G1842 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.8e-14 81.6 59 64.4
FAN06G0097 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.8e-14 81.6 59 64.4
FAN06G3392 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.8e-14 81.6 59 64.4
FAN10G0128 Fragaria x ananassa HOM05D004509 ORTHO05D005568 6.8e-14 81.6 59 64.4
TAR374G1004 Trochodendron aralioides HOM05D004509 ORTHO05D005568 6.8e-14 81.6 54 66.7
AUR62002199 Chenopodium quinoa HOM05D004509 ORTHO05D005568 8.8e-14 81.3 57 64.9
AUR62015503 Chenopodium quinoa HOM05D004509 ORTHO05D005568 8.8e-14 81.3 57 64.9
Gohir.D12G201400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 8.8e-14 81.3 54 68.5
Gorai.008G216500 Gossypium raimondii HOM05D004509 ORTHO05D005568 8.8e-14 81.3 54 68.5
CSS0008253 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 1.2e-13 80.9 60 63.3
COL.COLO4_14126 Corchorus olitorius HOM05D004509 ORTHO05D005568 1.2e-13 80.9 56 66.1
Actinidia13576 Actinidia chinensis HOM05D004509 ORTHO05D005568 1.5e-13 80.5 61 60.7
RcHm_v2.0_Chr1g0374441 Rosa chinensis HOM05D004509 ORTHO05D005568 1.5e-13 80.5 56 66.1
Ah.13g066850 Amaranthus hybridus HOM05D004509 ORTHO05D005568 2.0e-13 80.1 58 62.1
Aqoxy7G00754 Aquilegia oxysepala HOM05D004509 ORTHO05D005568 2.0e-13 80.1 57 64.9
EL10Ac3g05841 Beta vulgaris HOM05D004509 ORTHO05D005568 2.6e-13 79.7 66 57.6
CSS0001277 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 4.4e-13 79.0 57 63.2
CSS0023984 Camellia sinensis var. sinensis HOM05D004509 ORTHO05D005568 4.4e-13 79.0 57 63.2
Potri.003G109400 Populus trichocarpa HOM05D004509 ORTHO05D005568 5.7e-13 78.6 68 57.4
ClCG09G013200 Citrullus lanatus HOM05D004509 ORTHO05D005568 7.5e-13 78.2 54 66.7
CsaV3_6G036820 Cucumis sativus L. HOM05D004509 ORTHO05D005568 9.8e-13 77.8 54 64.8
Eucgr.K00157 Eucalyptus grandis HOM05D004509 ORTHO05D005568 9.8e-13 77.8 109 43.1
TWI23G1058 Tripterygium wilfordii HOM05D004509 ORTHO05D005568 9.8e-13 77.8 65 60.0
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 1.3e-12 77.4 61 59.0
MELO3C014338.2 Cucumis melo HOM05D004509 ORTHO05D005568 1.7e-12 77.0 54 64.8
MD07G1254100 Malus domestica HOM05D004509 ORTHO05D005568 1.7e-12 77.0 57 61.4
PSO017G1204 Papaver somniferum HOM05D004509 ORTHO05D005568 1.7e-12 77.0 59 62.7
MBI04_g41911_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 2.8e-12 76.3 54 63.0
MBI04_g44458_MAGBIO Magnolia biondii HOM05D004509 ORTHO05D005568 2.8e-12 76.3 54 63.0
BcaB03g12459 Brassica carinata HOM05D004509 ORTHO05D005568 4.8e-12 75.5 54 64.8
Thhalv10024774m.g Eutrema salsugineum HOM05D004509 ORTHO05D005568 4.8e-12 75.5 54 66.7
Sp7g23250 Schrenkiella parvula HOM05D004509 ORTHO05D005568 4.8e-12 75.5 54 66.7
THA.LOC104825064 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 4.8e-12 75.5 54 63.0
vmacro06795 Vaccinium macrocarpon HOM05D004509 ORTHO05D005568 6.3e-12 75.1 61 59.0
A03p55840 Brassica napus HOM05D004509 ORTHO05D005568 1.1e-11 74.3 54 64.8
BraA03t14655Z Brassica rapa HOM05D004509 ORTHO05D005568 1.1e-11 74.3 54 64.8
BcaC06g32827 Brassica carinata HOM05D004509 ORTHO05D005568 1.4e-11 73.9 54 64.8
C07p54120 Brassica napus HOM05D004509 ORTHO05D005568 1.4e-11 73.9 54 64.8
Gohir.A07G041300 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.4e-11 73.9 46 71.7
AT4G25230 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 1.8e-11 73.6 54 64.8
BolC7t45898H Brassica oleracea HOM05D004509 ORTHO05D005568 1.8e-11 73.6 54 64.8
AL7G27910 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 2.4e-11 73.2 54 64.8
PSO170G1118 Papaver somniferum HOM05D004509 ORTHO05D005568 2.4e-11 73.2 59 59.3
Rhsim03G0167900 Rhododendron simsii HOM05D004509 ORTHO05D005568 4.1e-11 72.4 50 64.0
Actinidia24699 Actinidia chinensis HOM05D004509 ORTHO05D005568 5.4e-11 72.0 57 59.6
Aa31sc16G230 Aethionema arabicum HOM05D004509 ORTHO05D005568 5.4e-11 72.0 54 63.0
Hund11825 Selenicereus undatus HOM05D004509 ORTHO05D005568 5.4e-11 72.0 60 55.0
Sabra03G0075900 Salix brachista HOM05D004509 ORTHO05D005568 9.1e-11 71.2 68 52.9
BcaC07g38180 Brassica carinata HOM05D004509 ORTHO05D005568 1.2e-10 70.9 55 63.6
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 1.2e-10 70.9 55 63.6
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 1.2e-10 70.9 55 63.6
BcaC09g50792 Brassica carinata HOM05D004509 ORTHO05D005568 1.6e-10 70.5 54 63.0
BolC1t01999H Brassica oleracea HOM05D004509 ORTHO05D005568 1.6e-10 70.5 54 63.0
CARHR232640 Cardamine hirsuta HOM05D004509 ORTHO05D005568 1.6e-10 70.5 54 63.0
Carub.0007s1579 Capsella rubella HOM05D004509 ORTHO05D005568 3.5e-10 69.3 54 61.1
Sed0007620 Sechium edule HOM05D004509 ORTHO05D005568 3.5e-10 69.3 60 55.0
THA.LOC104808282 Tarenaya hassleriana HOM05D004509 ORTHO05D005568 3.5e-10 69.3 59 59.3
Carub.0008s1147 Capsella rubella HOM05D004509 ORTHO05D005568 1.3e-09 67.4 54 59.3
Atru.chr1.723 Acer truncatum HOM05D004509 ORTHO05D005568 2.3e-09 66.6 39 74.4
AL8G25740 Arabidopsis lyrata HOM05D004509 ORTHO05D005568 2.9e-09 66.2 54 55.6
CDE11G0295 Ceratophyllum demersum HOM05D004509 ORTHO05D005568 3.8e-09 65.9 57 54.4
ATR0589G031 Amborella trichopoda HOM05D004509 ORTHO05D005568 5.0e-09 65.5 64 45.3
Lj8C42G3 Lonicera japonica HOM05D004509 ORTHO05D005568 6.5e-09 65.1 66 53.0
HanXRQChr14g0461391 Helianthus annuus HOM05D004509 ORTHO05D005568 8.6e-09 64.7 58 56.9
Sp6g13610 Schrenkiella parvula HOM05D004509 ORTHO05D005568 8.6e-09 64.7 68 48.5
AT5G51450 Arabidopsis thaliana HOM05D004509 ORTHO05D005568 1.1e-08 64.3 59 52.5
Gohir.D07G045400 Gossypium hirsutum HOM05D004509 ORTHO05D005568 1.5e-08 63.9 46 63.0
SEGI_31032 Sequoiadendron giganteum HOM05D004509 ORTHO05D005568 2.5e-08 63.2 60 48.3
DCAR_018107 Daucus carota HOM05D004509 ORTHO05D005568 3.2e-08 62.8 61 55.7
BraA01t01605Z Brassica rapa HOM05D004509 ORTHO05D005568 4.2e-08 62.4 47 63.8
CAN.G839.2 Capsicum annuum HOM05D004509 ORTHO05D005568 4.2e-08 62.4 68 48.5
ECA238G4038 Erigeron canadensis HOM05D004509 ORTHO05D005568 7.2e-08 61.6 73 49.3
A01p16520 Brassica napus HOM05D004509 ORTHO05D005568 1.2e-07 60.8 43 67.4
Nitab4.5_0000448g0150 Nicotiana tabacum HOM05D004509 ORTHO05D005568 1.2e-07 60.8 105 39.0
Cc02_g04230 Coffea canephora HOM05D004509 ORTHO05D005568 1.6e-07 60.5 61 52.5
Peaxi162Scf00054g02212 Petunia axillaris HOM05D004509 ORTHO05D005568 3.6e-07 59.3 66 47.0
Nitab4.5_0000262g0140 Nicotiana tabacum HOM05D004509 ORTHO05D005568 6.1e-07 58.5 57 52.6
Sopen06g010960 Solanum pennellii HOM05D004509 ORTHO05D005568 1.0e-06 57.8 67 49.3
HPP92_021040 Vanilla planifolia HOM05D004509 ORTHO05D005568 5.2e-06 55.5 53 50.9
HPP92_027424 Vanilla planifolia HOM05D004509 ORTHO05D005568 6.8e-06 55.1 53 50.9


User provided reference genes

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