Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.9e-147 525.8 255 100.0
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 5.5e-131 471.1 251 89.6
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 3.5e-130 468.4 251 89.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 2.1e-127 459.1 250 88.4
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.3e-124 449.9 249 86.3
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.1e-123 446.8 253 85.8
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.9e-123 446.0 250 85.2
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 5.5e-123 444.5 250 86.4
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 2.8e-119 432.2 253 81.0
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.8e-118 429.5 250 81.6
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.2e-106 390.2 251 73.3
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 5.1e-105 384.8 246 75.2
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.1e-104 383.6 250 70.8
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.3e-103 380.2 254 71.3
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.7e-103 379.8 253 71.5
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 8.2e-103 377.5 253 71.1
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.1e-102 377.1 251 70.5
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 5.3e-102 374.8 251 71.7
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.2e-101 373.6 253 70.4
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.5e-101 373.2 249 69.9
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 2.6e-101 372.5 248 70.6
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.5e-101 371.7 253 70.0
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.5e-101 371.7 250 70.4
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.7e-100 369.8 250 70.0
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.7e-100 369.8 250 69.6
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.2e-100 369.4 250 70.0
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 2.2e-100 369.4 250 70.0
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.9e-100 369.0 248 69.8
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.9e-100 369.0 246 71.1
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 3.8e-100 368.6 253 68.0
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 6.5e-100 367.9 247 69.2
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.9e-99 366.3 247 69.2
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 4.2e-99 365.2 250 75.2
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 7.2e-99 364.4 254 67.7
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 7.2e-99 364.4 254 69.3
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 9.4e-99 364.0 246 68.7
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 9.4e-99 364.0 247 69.2
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.2e-98 363.6 250 68.4
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.6e-98 363.2 193 90.2
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.1e-98 362.8 250 69.2
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.1e-98 362.8 250 69.2
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.4e-97 360.1 249 68.3
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 2.3e-97 359.4 249 67.5
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.3e-97 359.4 250 66.8
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 2.3e-97 359.4 247 68.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 3.0e-97 359.0 253 66.4
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.2e-97 358.2 254 66.9
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 5.2e-97 358.2 260 66.2
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.1e-96 357.1 250 67.6
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.0e-96 356.3 247 68.4
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 5.7e-96 354.8 250 67.2
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.3e-95 353.6 247 67.2
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.7e-95 353.2 247 67.2
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.8e-94 349.7 275 62.2
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 2.4e-94 349.4 251 65.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 2.4e-94 349.4 251 64.1
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 3.1e-94 349.0 251 65.3
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 4.1e-94 348.6 251 64.9
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.6e-93 346.7 250 65.2
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 2.0e-93 346.3 246 67.1
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 7.7e-93 344.4 246 64.6
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 2.9e-92 342.4 250 64.8
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.1e-91 340.5 251 63.7
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 5.5e-91 338.2 251 63.3
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.1e-90 334.7 251 62.5
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 8.0e-90 334.3 247 62.3
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 6.8e-89 331.3 250 60.8
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 6.8e-89 331.3 250 60.8
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.0e-88 329.7 250 61.6
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 2.6e-88 329.3 251 58.6
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.4e-88 328.6 253 60.1
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 7.5e-88 327.8 250 60.0
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 9.7e-88 327.4 250 59.6
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 1.3e-87 327.0 245 64.1
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.3e-87 327.0 246 60.2
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 2.2e-87 326.2 250 60.0
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 3.7e-87 325.5 250 60.4
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 6.3e-87 324.7 250 60.0
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 8.3e-87 324.3 250 60.4
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.8e-86 323.2 250 60.0
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 3.1e-86 322.4 250 60.0
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 4.1e-86 322.0 250 59.6
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 7.0e-86 321.2 250 59.6
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.7e-85 319.3 251 62.2
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 9.4e-83 310.8 269 58.0
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.2e-80 303.9 253 58.1
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.5e-80 303.5 251 59.0
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.6e-77 293.5 195 68.2
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 2.7e-77 292.7 226 60.6
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 4.5e-77 292.0 226 60.6
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.5e-75 284.3 188 68.6
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.1e-74 281.6 253 57.3
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.8e-73 280.0 253 57.3
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 4.0e-73 278.9 184 68.5
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.6e-72 276.2 191 64.4
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 9.8e-72 274.2 250 52.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.0e-68 264.2 153 79.7
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 8.6e-68 261.2 250 49.2
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.1e-67 260.8 176 69.9
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 2.5e-67 259.6 249 47.8
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 4.3e-67 258.8 165 71.5
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.4e-65 253.8 249 52.6
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.2e-64 250.8 253 51.8
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.5e-64 250.4 250 46.8
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 8.3e-63 244.6 203 64.5
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.4e-62 243.8 249 47.8
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.7e-61 239.6 214 56.5
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.0e-60 237.7 152 69.7
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.6e-58 230.3 150 68.0
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.3e-49 199.9 157 63.1
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.6e-48 196.4 178 54.5
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.6e-48 196.4 240 47.9
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 7.6e-48 194.9 240 47.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-47 194.1 151 64.9
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 4.0e-41 172.6 127 59.1
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.4e-38 164.1 216 32.9
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.6e-37 159.1 102 75.5
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.8e-37 158.3 228 43.0
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.3e-36 157.5 195 44.6
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 3.9e-36 156.0 149 55.0
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 5.1e-36 155.6 117 61.5
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 6.6e-36 155.2 100 74.0
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.9e-31 139.8 123 59.3
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 2.1e-29 133.7 245 34.3
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 3.4e-24 116.3 77 68.8
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 3.9e-20 102.8 94 56.4
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.4e-17 94.4 66 71.2
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.4e-17 93.6 75 56.0
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 7.1e-14 82.0 75 60.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.6e-13 79.3 67 61.2
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.7e-11 72.4 83 48.2


User provided reference genes

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