Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06298_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.6e-116 422.9 245 100.0
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.9e-112 409.5 245 96.3
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 7.9e-103 377.5 245 89.0
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 4.1e-99 365.2 246 85.8
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 1.5e-98 363.2 246 85.0
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 2.1e-95 352.8 247 83.4
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 2.8e-92 342.4 247 81.8
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 1.7e-89 333.2 247 80.2
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 1.4e-88 330.1 244 81.1
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 6.1e-87 324.7 245 79.2
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 1.1e-85 320.5 244 79.9
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 1.1e-85 320.5 246 79.3
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 9.7e-85 317.4 246 78.9
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 2.2e-84 316.2 246 78.0
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 1.0e-81 307.4 244 77.5
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 2.6e-74 282.7 244 71.3
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 4.5e-74 282.0 247 73.3
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 4.7e-71 271.9 244 61.9
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 1.8e-70 270.0 244 70.5
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 1.2e-69 267.3 246 61.0
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 1.5e-69 266.9 246 66.3
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 5.7e-69 265.0 245 69.4
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 7.5e-69 264.6 246 62.6
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.7e-68 263.5 244 60.7
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 2.8e-68 262.7 245 60.4
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 1.1e-67 260.8 245 60.0
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 1.1e-67 260.8 245 59.2
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 1.1e-67 260.8 245 59.2
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 3.1e-67 259.2 249 67.9
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 5.3e-67 258.5 243 65.0
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 5.3e-67 258.5 253 65.2
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 2.7e-66 256.1 247 60.3
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 2.7e-66 256.1 245 58.4
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 2.7e-66 256.1 246 62.2
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 1.7e-65 253.4 246 62.2
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 6.5e-65 251.5 252 65.1
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 8.5e-65 251.1 244 65.6
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 8.5e-65 251.1 244 65.6
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 1.1e-64 250.8 243 65.4
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 1.5e-64 250.4 250 64.0
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 7.2e-64 248.1 243 55.1
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 1.2e-63 247.3 249 59.0
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 1.6e-63 246.9 244 56.6
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 2.1e-63 246.5 246 55.7
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 2.1e-63 246.5 246 55.3
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 2.1e-63 246.5 244 63.9
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 3.6e-63 245.7 245 59.2
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 4.7e-63 245.4 260 54.2
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 4.7e-63 245.4 262 57.3
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 4.7e-63 245.4 253 55.7
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 1.0e-62 244.2 246 62.2
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.4e-62 243.8 247 55.9
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.8e-62 243.4 245 64.5
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 2.3e-62 243.0 247 56.3
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 3.0e-62 242.7 243 64.2
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 4.0e-62 242.3 247 56.3
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 4.0e-62 242.3 245 59.2
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 6.8e-62 241.5 246 55.7
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 8.8e-62 241.1 260 56.5
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.5e-61 240.4 243 63.4
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 3.4e-61 239.2 242 56.2
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 5.7e-61 238.4 259 51.4
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 5.7e-61 238.4 244 55.7
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 9.8e-61 237.7 260 53.8
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 9.8e-61 237.7 243 59.7
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 9.8e-61 237.7 243 64.2
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 1.7e-60 236.9 246 60.6
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 1.7e-60 236.9 245 63.3
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.7e-60 236.9 245 63.3
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.7e-60 236.9 245 63.3
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 1.7e-60 236.9 244 55.3
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 8.3e-60 234.6 246 57.3
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 1.8e-59 233.4 269 50.6
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 7.0e-59 231.5 249 53.0
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 9.1e-59 231.1 255 54.5
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 9.1e-59 231.1 242 61.2
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 1.6e-58 230.3 248 56.0
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 2.0e-58 229.9 263 52.1
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 4.5e-58 228.8 257 58.8
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 7.7e-58 228.0 247 57.1
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 1.3e-57 227.3 247 55.1
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 2.9e-57 226.1 255 58.4
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 3.8e-57 225.7 252 54.4
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 1.9e-56 223.4 250 56.4
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 4.2e-56 222.2 247 55.9
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 5.5e-56 221.9 248 55.6
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 7.2e-56 221.5 228 61.0
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 7.2e-56 221.5 244 56.6
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.1e-55 219.9 253 56.1
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 6.1e-55 218.4 245 53.9
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 1.4e-54 217.2 249 53.4
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 2.3e-54 216.5 248 54.0
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 3.0e-54 216.1 247 50.6
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 2.0e-53 213.4 245 52.7
Ca_06299_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 2.6e-53 213.0 141 85.1
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 3.4e-53 212.6 248 53.2
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 9.8e-53 211.1 220 54.5
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 9.8e-53 211.1 259 52.5
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 1.3e-52 210.7 252 52.4
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 6.3e-52 208.4 245 59.2
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 8.3e-52 208.0 191 67.0
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.1e-51 207.6 229 60.7
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 1.1e-51 207.6 221 53.8
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 1.1e-51 207.6 221 53.8
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 9.2e-51 204.5 245 56.7
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 9.2e-51 204.5 245 58.8
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 1.2e-50 204.1 243 52.3
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.6e-50 203.8 235 53.6
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 2.7e-50 203.0 244 55.3
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 2.7e-50 203.0 229 55.9
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.0e-49 201.1 194 55.2
MD07G1197800 Malus domestica HOM05D003624 ORTHO05D004188 6.6e-49 198.4 241 53.5
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 1.1e-48 197.6 248 48.4
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 1.5e-48 197.2 253 52.2
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 1.9e-48 196.8 248 48.0
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 2.5e-48 196.4 248 47.6
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 2.5e-48 196.4 250 47.2
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 2.5e-48 196.4 248 47.6
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 2.5e-48 196.4 250 47.2
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 2.5e-48 196.4 248 51.6
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 2.8e-47 193.0 245 51.0
QL08p059869 Quercus lobata HOM05D003624 ORTHO05D004188 3.6e-47 192.6 244 52.0
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 8.0e-47 191.4 245 47.8
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 2.3e-46 189.9 270 47.8
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 4.0e-46 189.1 235 50.2
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 4.0e-46 189.1 253 45.8
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 4.0e-46 189.1 220 54.1
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 2.6e-45 186.4 225 49.3
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 3.4e-45 186.0 194 55.7
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 3.4e-45 186.0 244 47.1
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 1.7e-44 183.7 196 52.0
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 2.9e-44 183.0 247 45.7
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 3.7e-44 182.6 261 46.4
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 1.1e-43 181.0 246 46.7
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 1.1e-43 181.0 246 46.7
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 3.2e-43 179.5 247 46.6
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 3.2e-43 179.5 247 46.6
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 2.7e-42 176.4 200 50.0
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 1.7e-41 173.7 255 44.7
Ca_20539_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 5.0e-41 172.2 99 91.9
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 6.6e-41 171.8 244 44.7
Lj8P417T12 Lonicera japonica HOM05D003624 ORTHO05D004188 1.1e-40 171.0 131 77.1
RcHm_v2.0_Chr2g0124981 Rosa chinensis HOM05D003624 ORTHO05D004188 1.4e-38 164.1 201 60.2
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 1.4e-38 164.1 273 46.5
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 6.8e-38 161.8 144 64.6
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 1.5e-37 160.6 135 59.3
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 1.5e-37 160.6 172 57.6
arahy.Tifrunner.gnm1.ann1.8ZK91E Arachis hypogaea HOM05D003624 ORTHO05D004188 4.4e-37 159.1 105 76.2
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 7.5e-37 158.3 183 58.5
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 9.8e-37 157.9 256 52.0
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 2.4e-35 153.3 135 59.3
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.2e-34 151.0 264 46.2
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 2.7e-34 149.8 255 39.2
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 7.8e-34 148.3 242 39.7
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 2.3e-33 146.7 247 38.5
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 4.9e-28 129.0 256 38.3
arahy.Tifrunner.gnm1.ann1.P0I32D Arachis hypogaea HOM05D003624 ORTHO05D004188 1.9e-27 127.1 78 80.8
ATR0691G167 Amborella trichopoda HOM05D003624 ORTHO05D004188 2.8e-23 113.2 104 53.8
RcHm_v2.0_Chr4g0406611 Rosa chinensis HOM05D003624 ORTHO05D004188 4.0e-22 109.4 81 70.4
GSVIVG01008269001 Vitis vinifera HOM05D003624 ORTHO05D004188 2.0e-21 107.1 198 39.9
SEGI_08994 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 5.8e-21 105.5 128 44.5
SEGI_35739 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 5.8e-21 105.5 128 44.5
Actinidia07728 Actinidia chinensis HOM05D003624 ORTHO05D004188 9.9e-21 104.8 74 66.2
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 5.4e-19 99.0 61 80.3
HPP92_019195 Vanilla planifolia HOM05D003624 ORTHO05D004188 1.6e-18 97.4 78 62.8
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.3e-17 94.4 63 79.4
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 1.3e-17 94.4 143 39.9
RcHm_v2.0_Chr4g0406621 Rosa chinensis HOM05D003624 ORTHO05D004188 2.5e-16 90.1 135 48.1
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 3.3e-16 89.7 117 42.7
unitig_26.g9713 Utricularia gibba HOM05D003624 ORTHO05D004188 6.2e-15 85.5 77 59.7
SEGI_06253 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 8.1e-15 85.1 109 48.6
arahy.Tifrunner.gnm1.ann1.Y1WZEQ Arachis hypogaea HOM05D003624 ORTHO05D004188 1.2e-13 81.3 104 52.9
Actinidia02952 Actinidia chinensis HOM05D003624 ORTHO05D004188 3.4e-13 79.7 123 45.5
DCAR_004680 Daucus carota HOM05D003624 ORTHO05D004188 9.9e-13 78.2 55 69.1
arahy.Tifrunner.gnm1.ann1.T8I7QW Arachis hypogaea HOM05D003624 ORTHO05D004188 3.8e-12 76.3 131 39.7
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 1.6e-10 70.9 257 28.4
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 2.1e-07 60.5 62 53.2
Lj8P608T25 Lonicera japonica HOM05D003624 ORTHO05D004188 3.6e-07 59.7 88 39.8
MCO11G622 Micromonas commoda HOM05D003624 ORTHO05D004188 8.1e-07 58.5 145 27.6


User provided reference genes

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