Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 1.4e-123 446.4 252 100.0
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 1.1e-118 430.3 252 94.0
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 2.4e-102 375.9 253 83.8
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 4.9e-100 368.2 252 82.5
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 8.1e-95 350.9 247 79.4
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 1.8e-94 349.7 246 75.2
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 3.1e-94 349.0 236 77.5
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.5e-93 346.7 236 77.1
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 1.3e-92 343.6 252 77.0
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 1.4e-91 340.1 214 80.4
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 1.4e-91 340.1 214 80.4
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 1.9e-91 339.7 253 76.3
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 1.6e-90 336.7 266 74.8
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 1.1e-86 323.9 251 73.3
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 1.1e-86 323.9 250 69.6
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 3.1e-86 322.4 256 76.2
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 1.5e-80 303.5 212 73.1
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 8.2e-79 297.7 242 64.5
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 1.1e-78 297.4 247 63.6
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 2.4e-78 296.2 249 68.3
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 6.9e-78 294.7 214 69.6
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 9.0e-78 294.3 258 66.7
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 1.2e-77 293.9 215 70.7
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 1.5e-77 293.5 214 69.2
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 7.7e-77 291.2 214 69.6
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 2.2e-76 289.7 252 66.3
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 2.9e-76 289.3 212 69.3
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 3.8e-76 288.9 248 64.5
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 1.1e-75 287.3 248 62.5
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 1.4e-75 287.0 217 68.2
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 1.4e-75 287.0 218 67.9
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.4e-75 287.0 210 67.1
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 1.9e-75 286.6 212 67.9
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.9e-75 286.6 210 67.1
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 3.2e-75 285.8 249 65.9
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 5.5e-75 285.0 218 67.4
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 5.5e-75 285.0 218 67.4
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 7.2e-75 284.6 245 60.8
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 9.4e-75 284.3 214 66.8
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 1.6e-74 283.5 249 62.2
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 2.1e-74 283.1 214 66.8
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 2.7e-74 282.7 245 60.0
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 6.1e-74 281.6 218 67.0
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 6.1e-74 281.6 211 65.4
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 7.9e-74 281.2 209 67.9
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 1.4e-73 280.4 208 70.7
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 3.0e-73 279.3 245 59.6
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 3.9e-73 278.9 213 66.2
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 8.8e-73 277.7 251 64.1
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 8.8e-73 277.7 210 66.7
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 2.5e-72 276.2 210 66.2
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 3.3e-72 275.8 247 61.5
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 5.7e-72 275.0 212 66.0
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 7.4e-72 274.6 212 65.6
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 7.4e-72 274.6 245 59.6
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 9.7e-72 274.2 248 58.1
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 9.7e-72 274.2 212 66.5
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.8e-71 272.7 209 66.0
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 1.4e-70 270.4 248 57.3
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 1.8e-70 270.0 246 58.5
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 1.8e-70 270.0 217 64.5
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 1.2e-69 267.3 276 52.9
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 1.5e-69 266.9 253 63.6
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 5.9e-69 265.0 212 64.2
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 1.0e-68 264.2 209 65.1
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 2.9e-68 262.7 212 65.6
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 6.5e-68 261.5 209 66.0
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 2.5e-67 259.6 223 63.7
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 9.4e-67 257.7 217 63.1
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.2e-66 257.3 250 57.2
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 2.1e-66 256.5 214 62.6
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.6e-66 255.8 198 65.2
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 4.7e-66 255.4 210 61.9
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 1.8e-65 253.4 209 62.7
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.0e-65 252.7 225 60.0
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 5.1e-65 251.9 211 64.0
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 5.1e-65 251.9 209 62.7
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 1.5e-61 240.4 202 61.9
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 3.5e-61 239.2 209 57.9
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 1.3e-60 237.3 213 55.4
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 1.9e-59 233.4 240 55.0
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 3.2e-59 232.6 204 60.8
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 7.2e-59 231.5 209 58.4
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 1.2e-58 230.7 209 60.3
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 2.7e-58 229.6 205 57.6
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 3.6e-58 229.2 260 49.6
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 1.0e-57 227.6 206 58.3
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 8.8e-57 224.6 210 55.2
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 1.1e-56 224.2 213 54.0
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 2.6e-56 223.0 219 57.1
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 3.3e-56 222.6 273 49.8
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 6.3e-55 218.4 214 53.3
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 1.1e-54 217.6 170 64.1
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 1.4e-54 217.2 224 53.1
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 1.8e-54 216.9 179 62.6
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 1.8e-54 216.9 217 55.3
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.4e-54 216.5 211 56.4
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 2.4e-54 216.5 283 45.9
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 3.1e-54 216.1 223 53.4
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 3.1e-54 216.1 224 52.7
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 9.1e-54 214.5 313 46.0
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 9.1e-54 214.5 164 66.5
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 9.1e-54 214.5 169 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 1.2e-53 214.2 207 53.1
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 1.2e-53 214.2 223 52.9
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 5.9e-53 211.8 203 56.2
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 5.0e-52 208.8 202 56.9
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 8.5e-52 208.0 291 48.1
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 1.9e-51 206.8 280 46.1
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 7.2e-51 204.9 169 63.9
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 3.6e-50 202.6 172 61.6
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 8.8e-49 198.0 212 52.8
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 8.3e-47 191.4 201 59.2
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 2.0e-45 186.8 182 56.0
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 5.9e-45 185.3 203 50.2
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 2.9e-44 183.0 209 49.3
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 3.8e-44 182.6 247 49.4
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 3.2e-43 179.5 125 72.0
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 4.4e-40 169.1 142 62.0
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 2.8e-39 166.4 125 66.4
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 3.5e-37 159.5 171 49.7
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.4e-32 142.9 225 42.7
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 1.7e-31 140.6 219 38.4
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 2.8e-26 123.2 94 60.6
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 5.8e-24 115.5 111 54.1
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 2.4e-22 110.2 211 32.2
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 3.2e-22 109.8 126 54.0
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 4.1e-22 109.4 82 69.5
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 7.8e-21 105.1 84 63.1
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 1.0e-20 104.8 81 63.0
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 3.0e-20 103.2 215 37.2
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 4.3e-19 99.4 143 44.1
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 3.1e-17 93.2 68 69.1
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 4.9e-15 85.9 196 29.1
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 4.9e-15 85.9 156 38.5
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.4e-14 84.3 179 37.4
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 6.0e-13 79.0 59 59.3
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 7.8e-13 78.6 47 78.7
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 7.3e-11 72.0 56 57.1
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 1.6e-10 70.9 55 65.5
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 8.1e-10 68.6 55 63.6
Aqoxy107s001 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 5.2e-09 65.9 74 52.7
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 3.4e-08 63.2 73 50.7
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 1.3e-07 61.2 44 65.9
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 3.7e-07 59.7 68 51.5
Zm00001eb118520 Zea mays HOM05D004958 ORTHO05D005983 3.7e-07 59.7 51 62.7
Lj2g0009320 Lotus japonicus HOM05D004958 ORTHO05D236879 3.2e-06 56.6 70 48.6
FAN15G1616 Fragaria x ananassa HOM05D004958 ORTHO05D005983 7.1e-06 55.5 47 57.4


User provided reference genes

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