Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 2006.9 1031 100.0
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1843.6 1045 91.5
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1793.9 1054 88.6
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1742.6 1046 86.9
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1741.1 1046 87.0
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1739.2 1043 87.0
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1732.6 1045 86.9
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1720.7 1048 85.3
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1715.7 1049 85.8
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1708.3 1063 85.1
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1642.1 1052 83.2
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1627.8 1037 81.0
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1619.0 1033 80.7
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1612.4 1051 80.0
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1604.0 1039 79.7
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1603.2 1039 79.7
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1600.9 1057 78.6
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1595.9 1057 78.4
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1593.6 1047 78.4
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1593.6 1050 78.9
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1590.1 1045 78.3
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1589.3 1047 78.5
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1587.4 1047 78.4
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1587.0 1049 78.5
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1587.0 1046 78.4
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1586.2 1045 78.7
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1583.9 1044 78.0
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1583.9 1040 78.3
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1580.5 1025 79.2
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1579.7 1050 78.2
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1577.0 1055 78.1
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1575.8 1022 79.6
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1575.1 1042 77.7
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1574.7 1046 78.2
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1571.6 1051 78.3
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1570.1 1047 77.7
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1568.1 1056 77.6
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1566.2 1031 77.9
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1565.8 1046 77.2
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1051 76.6
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1564.3 1037 77.3
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1563.5 1052 77.5
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1563.1 1050 76.9
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1561.6 1040 77.4
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1559.7 1082 75.0
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1050 77.3
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1554.3 1047 76.0
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1551.6 1047 76.2
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1544.3 1022 78.3
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1543.5 1038 76.7
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1542.3 1055 77.3
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1537.7 1049 75.9
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1537.7 1067 75.5
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1533.9 1047 75.5
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1532.3 1050 76.3
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1530.0 1039 74.8
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1529.6 1019 76.7
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1528.8 1048 75.0
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1528.8 1047 75.0
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1528.5 1037 75.3
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1527.7 1030 74.5
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1526.5 1061 75.7
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1525.0 1046 75.1
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1525.0 1047 75.6
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1525.0 1061 75.7
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1525.0 1046 75.1
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1523.5 1030 75.4
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1523.1 1046 75.5
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1520.4 1048 75.1
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1520.4 1048 75.1
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1518.8 1046 75.3
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1516.1 1085 73.0
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1515.4 1039 75.5
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1513.8 1047 74.2
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1513.4 1036 74.7
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1512.3 1035 76.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1512.3 1051 75.5
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1510.4 1052 74.1
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1509.6 1049 74.6
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1509.6 1039 75.6
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1508.4 1052 74.0
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1503.0 1039 75.2
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1493.8 1041 74.1
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1491.9 1039 74.3
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1488.8 1037 73.9
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1488.4 1049 73.3
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1485.7 1043 75.0
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1477.6 1056 73.0
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1477.2 1031 73.9
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1476.8 1041 74.7
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1476.1 1041 74.7
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1459.9 1086 71.7
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1454.9 1021 73.5
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1452.6 1084 71.9
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1443.3 1151 67.1
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1418.3 1051 70.7
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1408.7 1051 70.3
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1408.3 1017 70.8
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1404.0 1021 70.4
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1402.1 1049 69.9
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1358.6 1048 69.8
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1342.4 1045 68.5
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1340.9 1027 67.7
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1329.7 925 73.8
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1306.6 1039 66.8
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1291.6 959 69.4
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1265.0 961 67.5
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1263.1 1021 65.5
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1259.2 1002 66.3
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1258.8 1024 66.4
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1237.2 1017 63.6
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1188.7 816 73.9
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1104.7 1024 57.8
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1077.0 1017 57.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 7.1e-312 1074.3 759 74.3
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.2e-299 1031.9 1018 54.3
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 9.8e-296 1020.4 605 86.1
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 2.0e-293 1012.7 1028 54.1
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.6e-290 1003.0 709 71.7
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.9e-289 997.3 997 56.1
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.8e-287 992.3 716 71.1
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 3.0e-268 929.1 609 77.0
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.1e-266 921.0 949 55.7
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-265 919.5 1031 51.5
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 9.2e-262 907.5 479 96.5
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-259 899.4 1016 51.8
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-258 896.7 1029 51.2
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.5e-240 837.0 558 75.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 8.4e-223 778.1 444 87.8
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 7.9e-213 745.0 453 87.4
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-196 690.3 1023 43.3
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 6.5e-191 672.2 437 77.8
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 3.8e-183 646.4 1005 41.7
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.2e-181 641.3 399 78.9
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 5.7e-179 632.5 386 82.6
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-174 617.5 481 67.6
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 1.0e-172 611.7 522 60.2
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 4.0e-172 609.8 1028 38.2
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-139 501.1 373 68.6
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-139 500.7 372 72.0
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.9e-138 497.3 367 68.9
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.9e-138 497.3 367 68.9
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 2.1e-136 491.1 322 75.2
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 9.6e-134 482.3 500 56.4
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.1e-129 468.8 551 50.1
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 7.1e-129 466.1 415 58.6
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 2.6e-123 447.6 586 45.7
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 2.1e-117 427.9 1062 31.3
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-107 395.6 642 40.7
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 6.5e-98 363.2 280 64.6
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 2.1e-88 331.6 295 59.3
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.1e-88 330.1 503 42.9
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.1e-86 325.9 195 83.1
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 3.7e-77 294.3 517 36.8
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 8.0e-72 276.6 288 54.2
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 9.8e-70 269.6 419 41.8
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 4.5e-67 260.8 399 42.4
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 4.7e-64 250.8 360 50.0
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.2e-63 247.3 185 71.9
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 5.4e-60 237.3 135 85.2
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.5e-59 234.6 227 56.8
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.9e-59 233.8 294 46.9
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-54 218.0 220 56.4
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 9.2e-52 209.9 150 74.7
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.1e-48 198.7 165 66.7
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 2.2e-45 188.7 191 49.7
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 1.1e-41 176.4 142 61.3
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 3.5e-35 154.8 176 53.4
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.0e-35 154.1 123 65.0
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 9.5e-33 146.7 253 39.5
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 3.2e-28 131.7 208 39.9
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.5e-25 122.9 99 60.6
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.2e-24 119.8 88 63.6
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 5.2e-23 114.4 262 32.1
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.5e-14 86.3 100 49.0
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.1e-12 80.1 72 51.4
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 7.4e-09 67.4 49 63.3
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 7.4e-09 67.4 62 56.5
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.3e-08 66.6 69 44.9
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 3.1e-07 62.0 66 54.5


User provided reference genes

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