Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.8e-102 375.9 193 100.0
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 6.1e-82 307.8 183 83.6
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 7.4e-80 300.8 179 86.0
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 3.8e-68 261.9 176 73.9
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 5.5e-67 258.1 180 73.9
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 9.4e-67 257.3 181 74.0
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 9.4e-67 257.3 180 73.3
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.7e-66 255.8 180 72.8
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.4e-65 253.4 184 71.2
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.8e-65 253.1 183 71.6
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 2.3e-65 252.7 183 69.9
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.0e-65 252.3 179 69.3
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.9e-65 251.9 180 72.2
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 5.1e-65 251.5 178 68.0
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 6.7e-65 251.1 179 69.3
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 6.7e-65 251.1 178 68.5
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.1e-64 250.4 177 71.2
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.5e-64 250.0 178 68.5
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.5e-64 250.0 180 68.9
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 2.0e-64 249.6 185 67.6
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 2.6e-64 249.2 183 67.2
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.3e-64 248.8 178 68.5
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 4.4e-64 248.4 179 68.2
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 4.4e-64 248.4 177 68.9
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 4.4e-64 248.4 178 69.1
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 5.7e-64 248.1 178 68.5
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 5.7e-64 248.1 178 68.5
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 9.7e-64 247.3 178 68.0
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 9.7e-64 247.3 178 67.4
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 9.7e-64 247.3 178 67.4
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.3e-63 246.9 178 68.5
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.3e-63 246.9 179 67.0
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.3e-63 246.9 178 67.4
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.3e-63 246.9 180 67.2
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.7e-63 246.5 178 67.4
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 2.2e-63 246.1 178 66.9
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 2.8e-63 245.7 178 68.5
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.8e-63 245.7 178 68.0
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.8e-63 245.7 178 68.0
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.7e-63 245.4 178 66.9
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.7e-63 245.4 178 66.9
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.7e-63 245.4 179 67.0
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 3.7e-63 245.4 180 66.7
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 4.8e-63 245.0 180 66.7
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 6.3e-63 244.6 179 69.3
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 6.3e-63 244.6 180 66.1
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 6.3e-63 244.6 179 66.5
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 6.3e-63 244.6 178 65.7
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 6.3e-63 244.6 182 67.0
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.4e-62 243.4 180 66.7
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.8e-62 243.0 178 67.4
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.4e-62 242.7 185 65.9
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 3.1e-62 242.3 176 67.6
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.1e-62 242.3 176 67.6
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.1e-62 242.3 179 67.6
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 5.3e-62 241.5 179 65.9
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.3e-62 241.5 178 68.0
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.3e-62 241.5 178 66.3
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 5.3e-62 241.5 190 65.3
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 1.2e-61 240.4 179 65.9
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.5e-61 240.0 178 65.7
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 2.0e-61 239.6 178 66.9
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.0e-61 239.6 185 64.9
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 2.0e-61 239.6 192 63.5
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 2.0e-61 239.6 185 65.4
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.6e-61 239.2 179 65.9
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.5e-61 238.8 180 64.4
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 3.5e-61 238.8 185 64.9
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 4.5e-61 238.4 179 65.4
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 4.5e-61 238.4 179 65.4
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 4.5e-61 238.4 179 65.9
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.0e-60 237.3 178 64.6
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.0e-60 237.3 176 66.5
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.3e-60 236.9 179 65.4
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.3e-60 236.9 179 65.4
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.3e-60 236.9 179 65.4
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 1.3e-60 236.9 185 64.3
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.7e-60 236.5 185 64.9
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.2e-60 236.1 178 65.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.2e-60 236.1 178 65.2
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.9e-60 235.7 179 64.2
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 3.8e-60 235.3 178 65.2
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.8e-60 235.3 185 64.9
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.8e-60 235.3 185 64.9
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.8e-60 235.3 179 64.8
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 5.0e-60 235.0 179 64.8
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.0e-60 235.0 185 64.9
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 5.0e-60 235.0 178 64.6
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 6.5e-60 234.6 176 64.2
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.5e-60 234.6 178 64.6
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 6.5e-60 234.6 178 64.6
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 8.5e-60 234.2 179 64.8
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 8.5e-60 234.2 179 65.4
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.1e-59 233.8 178 65.2
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.5e-59 233.4 177 64.4
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.9e-59 233.0 181 65.2
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 3.2e-59 232.3 185 62.2
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.2e-59 232.3 179 64.8
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 4.2e-59 231.9 182 64.3
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 4.2e-59 231.9 177 65.5
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 7.2e-59 231.1 178 64.0
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.2e-58 230.3 179 63.1
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.6e-58 229.9 187 62.6
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.6e-58 229.9 178 63.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.1e-58 229.6 176 64.8
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.7e-58 229.2 180 63.9
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 4.7e-58 228.4 178 64.6
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 8.0e-58 227.6 179 60.3
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.0e-57 227.3 178 62.9
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.4e-57 226.9 178 62.4
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.3e-57 226.1 179 63.7
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 2.3e-57 226.1 178 63.5
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 8.8e-57 224.2 178 61.8
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 8.8e-57 224.2 182 61.5
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 8.8e-57 224.2 177 63.8
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 2.0e-56 223.0 183 59.6
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.0e-56 223.0 178 61.8
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 2.6e-56 222.6 183 58.5
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 5.7e-56 221.5 177 61.0
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 7.4e-56 221.1 178 60.7
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.7e-55 219.9 183 60.1
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.7e-55 219.9 168 63.1
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 2.2e-55 219.5 180 62.2
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 3.7e-55 218.8 181 60.8
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-54 217.2 179 60.3
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 3.1e-54 215.7 181 60.8
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 4.1e-54 215.3 182 59.3
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 6.5e-52 208.0 179 58.7
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.6e-50 203.4 180 56.1
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 4.7e-50 201.8 183 57.4
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 3.1e-46 189.1 178 56.7
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.5e-43 180.3 179 54.7
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 6.8e-41 171.4 184 50.5
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 3.7e-39 165.6 161 55.3
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.3e-36 157.1 199 43.2
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.3e-35 152.5 115 65.2
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 2.8e-34 149.4 177 43.5
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.6e-32 142.9 116 60.3
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 3.7e-31 139.0 154 48.7
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.5e-19 99.8 99 53.5
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.3e-19 99.0 84 64.3
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.4e-17 94.0 109 47.7
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 4.0e-17 92.4 166 34.9
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 5.4e-14 82.0 54 64.8
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 5.2e-09 65.5 65 47.7
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 1.5e-08 63.9 117 36.8
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 2.0e-08 63.5 38 76.3


User provided reference genes

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