Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 0.0e+00 1232.2 610 100.0
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 8.4e-138 495.0 244 99.2
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 1.4e-137 494.2 244 98.8
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 1.4e-137 494.2 244 99.2
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 2.5e-137 493.4 351 76.4
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 3.5e-136 489.6 242 98.3
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 7.9e-136 488.4 244 98.8
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 3.9e-135 486.1 244 96.7
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 3.9e-135 486.1 244 96.7
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 8.7e-135 485.0 242 97.5
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 1.3e-130 471.1 241 96.7
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-130 469.2 234 98.3
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-130 469.2 235 97.9
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-130 469.2 235 97.9
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-130 469.2 234 98.3
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-130 469.2 234 98.3
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-130 469.2 234 98.3
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 5.0e-130 469.2 234 98.3
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.9e-129 467.2 235 97.4
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 2.5e-129 466.8 241 96.3
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 2.5e-129 466.8 242 94.6
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 1.5e-126 457.6 230 97.8
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 5.7e-126 455.7 242 93.0
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 9.7e-126 454.9 244 93.0
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.7e-125 454.1 242 92.6
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 2.2e-125 453.8 242 93.8
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 8.2e-125 451.8 234 94.9
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 4.1e-124 449.5 230 96.1
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.5e-123 447.6 242 93.0
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 1.7e-122 444.1 238 93.7
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 7.2e-121 438.7 242 89.7
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 1.5e-118 431.0 230 92.2
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 1.5e-118 431.0 230 92.2
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 1.5e-118 431.0 230 92.2
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 1.5e-118 431.0 230 92.2
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 1.5e-118 431.0 230 92.2
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 1.5e-118 431.0 230 92.2
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 4.4e-118 429.5 248 89.5
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 5.7e-118 429.1 229 92.1
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 9.7e-118 428.3 231 92.2
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 3.7e-117 426.4 218 96.8
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 7.7e-115 418.7 228 91.2
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 5.0e-114 416.0 236 85.6
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 7.2e-113 412.1 283 76.3
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 3.6e-112 409.8 277 76.5
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 3.6e-112 409.8 277 76.5
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 9.1e-108 395.2 245 79.6
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 1.6e-107 394.4 242 83.9
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 5.9e-107 392.5 235 80.9
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.5e-105 387.9 270 75.2
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 1.2e-102 378.3 217 86.2
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 4.8e-101 372.9 192 96.9
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 1.4e-100 371.3 201 91.5
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 2.0e-99 367.5 206 87.9
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 4.5e-99 366.3 215 87.4
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 6.5e-98 362.5 202 90.6
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 1.8e-92 344.4 181 93.9
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 4.7e-88 329.7 170 97.1
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 9.8e-78 295.4 160 91.9
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 6.2e-72 276.2 169 80.5
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 4.0e-71 273.5 193 77.2
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 4.0e-71 273.5 193 77.2
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 2.1e-67 261.2 153 86.9
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 1.0e-66 258.8 127 97.6
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 4.7e-64 250.0 189 70.9
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 2.9e-61 240.7 124 94.4
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.4e-60 238.4 125 92.0
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 1.9e-60 238.0 127 91.3
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 2.4e-60 237.7 125 92.8
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 2.4e-60 237.7 200 66.0
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.4e-60 237.7 125 92.0
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.4e-60 237.7 125 92.0
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.4e-60 237.7 125 92.0
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.4e-60 237.7 125 92.0
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.4e-60 237.7 125 92.0
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 4.1e-60 236.9 124 92.7
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 6.6e-58 229.6 161 73.9
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 1.1e-57 228.8 125 89.6
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 1.5e-54 218.4 125 87.2
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 3.8e-53 213.8 120 87.5
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.1e-52 212.2 113 90.3
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 3.6e-48 197.2 105 91.4
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 8.1e-48 196.1 98 93.9
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 3.1e-47 194.1 103 89.3
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 4.0e-47 193.7 121 80.2
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 7.6e-46 189.5 139 64.0
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 8.4e-45 186.0 108 82.4
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 1.4e-44 185.3 115 80.9
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 9.3e-44 182.6 96 92.7
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 6.0e-43 179.9 96 93.8
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 6.0e-43 179.9 96 93.8
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 6.0e-43 179.9 106 87.7
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 1.9e-41 174.9 104 85.6
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.5e-41 174.5 100 86.0
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.5e-41 174.5 100 86.0
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.5e-41 174.5 100 86.0
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 5.6e-41 173.3 88 94.3
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 5.6e-41 173.3 88 94.3
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 3.1e-39 167.5 84 95.2
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 6.9e-39 166.4 117 67.5
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 7.6e-38 162.9 92 82.6
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 6.4e-37 159.8 98 78.6
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 2.4e-36 157.9 87 88.5
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 6.0e-35 153.3 85 83.5
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 2.3e-34 151.4 155 54.8
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.1e-34 150.2 84 88.1
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.9e-33 148.3 142 59.2
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 7.4e-33 146.4 94 74.5
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 2.8e-32 144.4 72 94.4
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 8.1e-32 142.9 90 76.7
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 2.4e-31 141.4 72 97.2
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 4.0e-31 140.6 84 85.7
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.0e-30 138.3 103 67.0
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 2.6e-30 137.9 113 56.6
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 4.5e-30 137.1 71 91.5
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 2.7e-27 127.9 125 56.0
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 4.6e-27 127.1 60 95.0
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 1.3e-26 125.6 128 46.9
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 1.8e-26 125.2 71 83.1
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 2.3e-26 124.8 102 64.7
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.0e-26 124.4 120 55.8
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 6.7e-26 123.2 126 59.5
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 1.3e-24 119.0 70 77.1
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 1.6e-24 118.6 61 93.4
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 2.1e-24 118.2 62 85.5
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.8e-24 117.1 61 93.4
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 6.3e-24 116.7 107 56.1
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 4.1e-23 114.0 80 61.2
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.0e-22 111.7 58 87.9
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 4.5e-22 110.5 201 37.3
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 3.8e-21 107.5 77 66.2
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 9.3e-20 102.8 56 80.4
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 9.3e-20 102.8 125 49.6
Lalb_Chr00c24g0406741 Lupinus albus HOM05D016900 ORTHO05D018495 1.6e-19 102.1 50 96.0
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.1e-19 101.7 61 82.0
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 3.6e-19 100.9 54 88.9
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.3e-18 98.2 86 55.8
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.3e-17 94.0 54 85.2
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.2e-16 89.7 54 83.3
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 1.1e-15 89.4 43 90.7
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 1.5e-14 85.5 41 90.2
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 1.5e-14 85.5 41 90.2
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 5.9e-14 83.6 71 66.2
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 1.3e-13 82.4 43 88.4
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 3.8e-13 80.9 74 62.2
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.4e-12 79.0 48 75.0
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 1.9e-12 78.6 110 46.4
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 9.4e-12 76.3 48 83.3
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 9.4e-12 76.3 40 85.0
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-11 75.9 63 63.5
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 4.6e-11 73.9 52 75.0
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 6.1e-11 73.6 44 79.5
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-09 68.9 49 65.3
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 2.0e-09 68.6 67 55.2
Nitab4.5_0000216g0120 Nicotiana tabacum HOM05D004291 ORTHO05D005620 7.4e-09 66.6 43 69.8
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 9.7e-09 66.2 49 67.3
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 3.7e-08 64.3 58 56.9
SHI08953 Sapria himalayana HOM05D004291 ORTHO05D005620 3.7e-08 64.3 156 32.1
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 1.2e-06 59.3 49 61.2
Sc08g0004800 Simmondsia chinensis HOM05D004291 ORTHO05D005620 1.2e-06 59.3 47 66.0
arahy.Tifrunner.gnm1.ann1.M5LPST Arachis hypogaea HOM05D016900 ORTHO05D018495 4.5e-06 57.4 33 84.8
arahy.Tifrunner.gnm1.ann1.Q2LN0H Arachis hypogaea HOM05D016900 ORTHO05D018495 4.5e-06 57.4 33 84.8


User provided reference genes

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