Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 9.3e-243 843.2 448 100.0
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 3.9e-225 784.6 446 91.7
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.8e-222 775.8 449 91.1
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 4.1e-222 774.6 449 91.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 4.7e-210 734.6 455 84.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.1e-208 729.9 449 85.1
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 2.0e-208 729.2 456 85.1
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 6.5e-204 714.1 447 82.8
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.6e-202 708.4 459 81.3
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 6.1e-202 707.6 451 83.8
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.0e-201 706.8 459 81.0
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.6e-184 649.0 458 75.3
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 9.1e-182 640.6 455 75.4
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.2e-181 640.2 455 76.0
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.5e-181 638.3 454 74.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.3e-180 636.0 452 74.8
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 4.2e-179 631.7 453 75.5
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 7.2e-179 630.9 441 77.8
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.6e-178 629.8 453 76.2
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.8e-178 629.0 453 76.6
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.8e-177 626.3 458 74.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 5.2e-177 624.8 463 75.2
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 8.9e-177 624.0 451 75.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.9e-177 624.0 451 75.2
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.6e-176 622.5 451 75.4
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.8e-175 619.0 458 73.4
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.4e-174 615.9 457 71.8
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 7.0e-174 614.4 452 73.0
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 9.2e-174 614.0 453 74.4
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.0e-172 610.5 452 72.8
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.3e-172 609.4 458 71.4
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.1e-171 607.1 451 71.8
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.1e-171 607.1 451 72.9
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.1e-171 607.1 464 71.6
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.5e-171 605.9 450 75.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.5e-171 605.9 452 73.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 5.6e-171 604.7 449 73.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 5.6e-171 604.7 452 73.2
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 9.5e-171 604.0 461 71.6
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.1e-170 602.8 452 72.8
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.6e-170 602.1 455 72.1
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 4.7e-170 601.7 452 75.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 8.0e-170 600.9 436 72.0
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.4e-169 600.1 459 71.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.8e-169 599.7 439 73.3
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.3e-169 599.4 452 72.3
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.3e-169 599.4 452 72.3
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 5.2e-169 598.2 451 71.4
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 4.4e-168 595.1 453 71.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 5.8e-168 594.7 441 72.6
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.7e-167 593.2 462 68.6
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.9e-167 592.4 429 75.1
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.1e-166 590.5 455 70.8
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.4e-166 590.1 454 71.1
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 2.0e-165 586.3 459 71.0
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 7.8e-165 584.3 454 70.7
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.7e-164 583.2 455 71.2
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 3.0e-164 582.4 458 69.0
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.9e-164 582.0 454 70.3
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 8.6e-164 580.9 454 70.0
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.5e-163 580.1 461 70.1
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.9e-163 579.7 443 69.8
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.3e-163 578.9 454 70.7
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.3e-163 578.9 457 68.3
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.3e-163 578.6 457 68.1
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 4.3e-163 578.6 362 82.0
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 4.3e-163 578.6 453 70.6
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 9.5e-163 577.4 456 70.0
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 9.5e-163 577.4 457 68.3
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 3.6e-162 575.5 458 67.7
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.6e-162 575.5 448 68.8
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 6.2e-162 574.7 362 82.0
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 8.0e-162 574.3 451 69.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.4e-161 573.5 380 77.9
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 3.1e-161 572.4 454 70.0
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 3.1e-161 572.4 451 69.0
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 6.8e-161 571.2 455 69.9
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.2e-160 570.5 448 69.0
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 4.4e-160 568.5 456 68.2
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 5.8e-160 568.2 431 71.2
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 5.8e-160 568.2 431 71.2
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 5.8e-160 568.2 431 71.2
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.7e-159 566.6 448 68.3
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 3.7e-159 565.5 445 69.9
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 3.7e-159 565.5 425 71.5
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.1e-158 562.0 446 68.6
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 7.0e-158 561.2 444 69.4
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.3e-156 557.0 439 65.8
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.0e-156 555.8 450 68.2
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 4.3e-155 552.0 439 68.1
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.7e-154 548.5 456 67.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 2.6e-152 542.7 448 65.4
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 2.6e-152 542.7 341 80.9
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.7e-151 540.0 448 65.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.1e-150 537.3 456 65.8
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.1e-150 537.3 456 65.8
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 2.4e-150 536.2 448 64.5
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 6.2e-146 521.5 454 65.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.1e-145 519.2 400 69.5
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 9.9e-144 514.2 364 71.4
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-139 500.4 450 62.4
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.7e-132 476.9 459 60.1
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.1e-130 469.9 320 75.0
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.2e-126 456.1 307 77.5
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 3.5e-125 452.6 311 74.3
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 1.9e-123 446.8 290 80.0
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 4.2e-118 429.1 369 61.8
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.3e-116 423.3 376 60.6
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 3.0e-116 422.9 371 61.5
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.5e-115 420.6 369 61.0
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.7e-114 416.0 282 75.2
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 3.1e-113 412.9 366 59.3
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.7e-111 407.1 295 70.2
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.5e-110 403.3 372 55.6
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 3.0e-108 396.4 280 70.4
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 4.5e-104 382.5 284 71.1
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.3e-100 370.2 367 56.4
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.7e-99 365.5 368 54.9
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 3.1e-97 359.8 297 63.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 8.5e-95 351.7 367 54.5
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 3.2e-94 349.7 337 55.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 4.7e-93 345.9 379 52.8
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.5e-91 340.9 361 51.0
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 6.5e-87 325.5 364 51.6
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 8.8e-84 315.1 248 67.3
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 6.3e-82 308.9 377 46.4
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 9.4e-70 268.5 332 49.7
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.6e-53 214.5 150 72.0
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.1e-53 214.2 345 42.6
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 2.0e-43 181.0 222 49.5
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.1e-41 172.6 163 56.4
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-40 171.0 114 72.8
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.2e-34 151.0 88 81.8
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.3e-34 149.1 156 53.2
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 5.1e-31 139.8 114 60.5
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.3e-30 136.7 171 47.4
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 2.7e-24 117.5 73 82.2
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-20 105.5 87 70.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.2e-17 94.0 92 51.1
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.8e-12 78.2 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-10 72.0 93 49.5
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 3.2e-09 67.4 191 33.0


User provided reference genes

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