Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 8.5e-289 996.5 577 100.0
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 5.4e-195 684.9 485 81.0
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.3e-193 680.2 480 84.0
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 3.3e-192 675.6 493 82.2
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 3.3e-192 675.6 522 73.0
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 5.6e-192 674.9 473 86.5
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 9.6e-192 674.1 473 87.3
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 3.8e-188 662.1 490 83.9
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 1.3e-185 653.7 386 87.3
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 1.8e-182 643.3 382 86.4
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 5.8e-181 638.3 484 79.8
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.7e-180 636.7 484 79.3
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 6.9e-174 614.8 483 79.5
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 2.2e-172 609.8 480 77.1
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 4.2e-171 605.5 385 81.6
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 1.4e-169 600.5 482 75.3
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 2.5e-168 596.3 483 74.3
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 1.3e-164 583.9 492 70.9
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.5e-163 579.7 481 71.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 2.5e-163 579.7 394 79.4
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 1.6e-162 577.0 478 70.9
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 2.1e-162 576.6 478 72.6
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 3.6e-162 575.9 483 74.7
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 4.7e-162 575.5 511 71.2
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 3.3e-160 569.3 481 71.3
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.7e-159 567.0 483 75.2
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 4.8e-159 565.5 466 79.4
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 8.2e-159 564.7 483 74.9
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 8.2e-159 564.7 479 71.6
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.4e-158 563.9 483 74.9
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 9.1e-158 561.2 478 70.3
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.2e-157 560.8 500 66.8
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 2.6e-157 559.7 492 71.1
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 4.5e-157 558.9 482 69.7
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.3e-156 557.4 481 72.3
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.1e-155 554.3 480 71.0
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 2.0e-152 543.5 493 69.8
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.0e-152 543.5 490 62.9
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 3.3e-152 542.7 482 63.3
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 5.7e-152 542.0 492 68.9
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 9.7e-152 541.2 481 69.4
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 1.3e-151 540.8 481 64.9
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.8e-151 539.7 494 68.4
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 3.7e-151 539.3 479 69.1
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 6.3e-151 538.5 482 63.5
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 8.2e-151 538.1 478 69.9
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.4e-150 537.3 480 62.3
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.8e-150 537.0 489 70.8
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 7.0e-150 535.0 478 62.8
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 9.1e-150 534.6 483 69.4
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.2e-149 534.3 365 78.4
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.0e-149 533.5 480 69.6
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 4.5e-149 532.3 475 66.5
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 4.5e-149 532.3 489 64.6
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 2.2e-148 530.0 385 71.9
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.1e-147 527.7 488 61.9
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 7.2e-147 525.0 484 67.4
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 2.1e-146 523.5 511 63.0
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.8e-145 520.4 482 68.3
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 5.2e-145 518.8 401 70.1
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 6.7e-145 518.5 433 70.4
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 3.3e-144 516.2 482 61.6
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 7.5e-144 515.0 386 71.8
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 9.7e-144 514.6 481 68.6
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 4.8e-143 512.3 482 67.2
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 8.2e-143 511.5 481 68.4
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.1e-142 511.1 387 71.3
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 1.2e-141 507.7 481 61.5
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.0e-141 506.9 482 65.4
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 5.9e-141 505.4 386 71.0
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 1.7e-140 503.8 416 67.8
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 2.9e-140 503.1 490 60.2
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 3.8e-140 502.7 476 64.3
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 5.0e-140 502.3 407 68.8
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 8.5e-140 501.5 481 68.8
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 5.5e-139 498.8 476 64.1
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 1.2e-138 497.7 480 67.9
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 2.7e-138 496.5 384 71.1
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.4e-137 494.2 481 63.4
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 6.3e-135 485.3 465 61.9
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.1e-134 484.6 488 62.9
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 1.4e-134 484.2 355 72.1
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 2.0e-133 480.3 482 65.4
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 4.9e-127 459.1 351 69.2
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 2.4e-126 456.8 350 71.7
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 4.1e-126 456.1 494 55.1
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.6e-122 444.1 371 74.9
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 1.2e-120 438.0 384 62.0
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 7.5e-120 435.3 472 56.1
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 2.9e-119 433.3 483 61.3
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.0e-116 424.9 383 61.1
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.3e-116 424.5 397 59.9
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 6.6e-116 422.2 385 61.0
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 4.3e-115 419.5 479 54.1
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 6.2e-114 415.6 383 61.1
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 1.8e-113 414.1 507 59.8
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.2e-112 411.4 486 61.5
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 6.4e-111 405.6 453 63.8
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.1e-110 404.8 488 59.0
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 5.4e-110 402.5 475 59.8
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 1.2e-109 401.4 485 60.8
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.2e-109 401.4 488 60.0
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 2.7e-109 400.2 514 58.4
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 7.8e-109 398.7 483 60.2
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.3e-108 397.9 511 58.7
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 8.6e-108 395.2 518 57.3
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 2.8e-106 390.2 487 59.8
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.4e-105 387.9 391 56.5
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 4.9e-103 379.4 470 59.6
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 9.2e-94 348.6 372 53.2
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.5e-91 340.5 306 59.8
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 4.7e-90 336.3 314 72.6
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 1.4e-89 334.7 344 55.5
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.4e-89 334.7 330 57.9
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 2.4e-89 334.0 313 59.4
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.0e-81 306.6 215 72.1
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.3e-81 306.2 215 72.1
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.3e-81 306.2 215 72.1
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.3e-81 306.2 215 72.1
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.1e-75 288.5 381 48.6
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 1.9e-75 287.7 500 42.0
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.1e-74 284.3 393 50.9
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.9e-67 261.2 303 50.2
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.6e-66 258.1 465 41.1
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 6.7e-60 236.1 346 45.4
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 8.7e-60 235.7 186 67.7
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 1.4e-54 218.4 295 46.4
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 5.9e-48 196.4 268 60.4
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.3e-44 184.5 134 74.6
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 2.5e-38 164.5 103 76.7
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.5e-38 164.5 469 35.6
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 2.4e-33 147.9 108 75.0
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 3.5e-32 144.1 282 37.6
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 3.8e-31 140.6 370 32.4
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.8e-28 131.7 237 39.7
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 2.6e-27 127.9 137 55.5
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.7e-27 126.7 181 43.6
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 3.2e-22 110.9 305 28.2
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 3.7e-18 97.4 59 81.4
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 1.4e-17 95.5 88 53.4
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 2.9e-15 87.8 89 55.1
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 5.7e-11 73.6 41 82.9
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 2.4e-09 68.2 41 80.5
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 6.6e-07 60.1 70 48.6
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.9e-06 58.5 139 49.6


User provided reference genes

Program Settings