Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02056_v3 Cicer arietinum L. HOM05D005790 ORTHO05D007464 3.4e-211 738.0 362 100.0
Medtr3g113190 Medicago truncatula HOM05D005790 ORTHO05D007464 1.8e-191 672.5 365 90.4
Lj1g0012079 Lotus japonicus HOM05D005790 ORTHO05D007464 9.3e-177 623.6 386 80.8
Glyma.06G026400 Glycine max HOM05D005790 ORTHO05D007464 1.2e-171 606.7 384 78.4
VMungo1309G1814 Vigna mungo HOM05D005790 ORTHO05D007464 2.6e-171 605.5 384 76.8
Phvul.009G014700 Phaseolus vulgaris HOM05D005790 ORTHO05D007464 1.1e-169 600.1 384 76.0
Lalb_Chr08g0246071 Lupinus albus HOM05D005790 ORTHO05D007464 1.5e-158 563.1 380 73.4
arahy.Tifrunner.gnm1.ann1.BXK9RQ Arachis hypogaea HOM05D005790 ORTHO05D007464 8.8e-151 537.3 382 71.5
arahy.Tifrunner.gnm1.ann1.S6ZM1I Arachis hypogaea HOM05D005790 ORTHO05D007464 1.5e-150 536.6 380 70.5
CANSAT01G0079 Cannabis sativa HOM05D005790 ORTHO05D007464 3.7e-149 531.9 369 70.2
Dinv31817 Davidia involucrata HOM05D005790 ORTHO05D007464 8.2e-149 530.8 388 67.0
Manes.13G125500 Manihot esculenta HOM05D005790 ORTHO05D007464 3.1e-148 528.9 389 66.1
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.7e-147 525.8 390 65.4
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 7.7e-147 524.2 387 66.9
COL.COLO4_26188 Corchorus olitorius HOM05D005790 ORTHO05D007464 5.0e-146 521.5 391 65.0
Prupe.1G369900 Prunus persica HOM05D005790 ORTHO05D007464 6.5e-146 521.2 392 65.1
Sed0009865 Sechium edule HOM05D005790 ORTHO05D007464 9.4e-145 517.3 388 64.7
PGR031G1208 Punica granatum HOM05D005790 ORTHO05D007464 4.7e-144 515.0 388 63.1
GSVIVG01009836001 Vitis vinifera HOM05D005790 ORTHO05D007464 6.1e-144 514.6 382 64.7
CSS0050056 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.3e-143 512.7 385 66.0
RcHm_v2.0_Chr6g0272131 Rosa chinensis HOM05D005790 ORTHO05D007464 4.0e-143 511.9 386 64.2
MELO3C024652.2 Cucumis melo HOM05D005790 ORTHO05D007464 5.2e-143 511.5 383 65.3
Gohir.A06G005800 Gossypium hirsutum HOM05D005790 ORTHO05D007464 1.2e-142 510.4 385 64.7
CiPaw.07G153400 Carya illinoinensis HOM05D005790 ORTHO05D007464 1.5e-142 510.0 389 65.8
CsaV3_1G045470 Cucumis sativus L. HOM05D005790 ORTHO05D007464 1.5e-142 510.0 384 64.6
FvH4_2g39120 Fragaria vesca HOM05D005790 ORTHO05D007464 2.0e-142 509.6 386 63.5
Potri.009G002100 Populus trichocarpa HOM05D005790 ORTHO05D007464 2.2e-141 506.1 388 65.2
PGSC0003DMG400016117 Solanum tuberosum HOM05D005790 ORTHO05D007464 2.8e-141 505.8 383 63.7
ClCG05G018560 Citrullus lanatus HOM05D005790 ORTHO05D007464 6.3e-141 504.6 412 61.2
Gorai.010G006000 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.1e-140 503.8 385 63.9
Gohir.D06G001600 Gossypium hirsutum HOM05D005790 ORTHO05D007464 5.4e-140 501.5 385 64.2
Sopen11g005650 Solanum pennellii HOM05D005790 ORTHO05D007464 9.1e-140 500.7 383 63.2
Ciclev10008674m.g Citrus clementina HOM05D005790 ORTHO05D007464 1.2e-139 500.4 375 65.6
Solyc11g010910.3 Solanum lycopersicum HOM05D005790 ORTHO05D007464 2.7e-139 499.2 383 62.9
TWI36G0257 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.9e-139 498.0 405 59.8
FAN20G0385 Fragaria x ananassa HOM05D005790 ORTHO05D007464 1.7e-138 496.5 391 61.9
MD15G1016100 Malus domestica HOM05D005790 ORTHO05D007464 2.9e-138 495.7 389 63.2
PSO675G3524 Papaver somniferum HOM05D005790 ORTHO05D007464 3.8e-138 495.4 380 62.1
PSO541G0736 Papaver somniferum HOM05D005790 ORTHO05D007464 2.5e-137 492.7 369 63.4
Cc10_g02010 Coffea canephora HOM05D005790 ORTHO05D007464 3.2e-137 492.3 373 64.9
QL02p010842 Quercus lobata HOM05D005790 ORTHO05D007464 3.2e-137 492.3 455 56.9
ECA247G0379 Erigeron canadensis HOM05D005790 ORTHO05D007464 4.2e-137 491.9 381 61.4
TAR381G1687 Trochodendron aralioides HOM05D005790 ORTHO05D007464 4.2e-137 491.9 406 59.9
vmacro21704 Vaccinium macrocarpon HOM05D005790 ORTHO05D007464 9.5e-137 490.7 399 62.4
MD08G1017100 Malus domestica HOM05D005790 ORTHO05D007464 1.2e-136 490.3 413 59.3
FAN15G2431 Fragaria x ananassa HOM05D005790 ORTHO05D007464 4.0e-135 485.3 425 57.2
Eucgr.J01034 Eucalyptus grandis HOM05D005790 ORTHO05D007464 5.7e-134 481.5 383 62.9
FAN20G1847 Fragaria x ananassa HOM05D005790 ORTHO05D007464 7.5e-134 481.1 420 57.6
Sp7g27670 Schrenkiella parvula HOM05D005790 ORTHO05D007464 7.5e-134 481.1 382 60.2
Thhalv10025433m.g Eutrema salsugineum HOM05D005790 ORTHO05D007464 9.8e-134 480.7 384 60.9
CARHR237760 Cardamine hirsuta HOM05D005790 ORTHO05D007464 2.8e-133 479.2 383 60.3
MSTRG.18414 Avicennia marina HOM05D005790 ORTHO05D007464 4.9e-133 478.4 368 62.0
BraA01t00778Z Brassica rapa HOM05D005790 ORTHO05D007464 8.3e-133 477.6 384 60.7
AL7G22390 Arabidopsis lyrata HOM05D005790 ORTHO05D007464 1.4e-132 476.9 382 60.2
Aqoxy2G03135 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 9.2e-132 474.2 363 61.2
C01p09340 Brassica napus HOM05D005790 ORTHO05D007464 1.6e-131 473.4 384 60.4
BolC1t00922H Brassica oleracea HOM05D005790 ORTHO05D007464 1.6e-131 473.4 384 60.4
A01p08300 Brassica napus HOM05D005790 ORTHO05D007464 1.7e-130 469.9 384 59.9
AUR62019151 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.7e-130 469.9 381 59.8
DCAR_017500 Daucus carota HOM05D005790 ORTHO05D007464 3.8e-130 468.8 380 60.3
Carub.0004s1477 Capsella rubella HOM05D005790 ORTHO05D007464 5.0e-130 468.4 383 60.1
Rhsim06G0026000 Rhododendron simsii HOM05D005790 ORTHO05D007464 5.0e-130 468.4 471 52.0
AT4G29860 Arabidopsis thaliana HOM05D005790 ORTHO05D007464 8.6e-130 467.6 382 60.2
Duzib093G0196 Durio zibethinus HOM05D005790 ORTHO05D007464 3.3e-129 465.7 352 65.1
Lsat_1_v5_gn_1_16241 Lactuca sativa HOM05D005790 ORTHO05D007464 4.3e-129 465.3 384 58.3
Sc02g0005160 Simmondsia chinensis HOM05D005790 ORTHO05D007464 4.3e-129 465.3 382 58.9
EL10Ac1g00445 Beta vulgaris HOM05D005790 ORTHO05D007464 1.6e-128 463.4 381 58.5
AUR62014415 Chenopodium quinoa HOM05D005790 ORTHO05D007464 1.4e-127 460.3 404 56.7
CSS0048998 Camellia sinensis var. sinensis HOM05D005790 ORTHO05D007464 2.3e-127 459.5 354 64.7
Peaxi162Scf00085g00528 Petunia axillaris HOM05D005790 ORTHO05D007464 4.4e-126 455.3 376 60.6
Zm00001eb378230 Zea mays HOM05D005790 ORTHO05D007464 9.8e-126 454.1 380 57.1
SGA_v2.0_scaffold8G04609 Striga asiatica HOM05D005790 ORTHO05D007464 4.1e-124 448.7 362 59.4
ATR0945G002 Amborella trichopoda HOM05D005790 ORTHO05D007464 7.0e-124 448.0 401 55.9
Migut.D00577 Erythranthe guttata HOM05D005790 ORTHO05D007464 5.9e-123 444.9 362 58.8
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 1.0e-122 444.1 499 49.1
Thecc.08G038500 Theobroma cacao HOM05D005790 ORTHO05D007464 2.3e-122 443.0 387 59.2
THA.LOC104811397 Tarenaya hassleriana HOM05D005790 ORTHO05D007464 5.2e-119 431.8 400 54.8
unitig_26.g10135 Utricularia gibba HOM05D005790 ORTHO05D007464 8.9e-119 431.0 361 55.1
HanXRQChr02g0043921 Helianthus annuus HOM05D005790 ORTHO05D007464 7.5e-118 427.9 360 58.1
Os06g0131100 Oryza sativa ssp. japonica HOM05D005790 ORTHO05D007464 2.4e-116 422.9 372 55.1
SHI02412 Sapria himalayana HOM05D005790 ORTHO05D007464 3.2e-116 422.5 386 55.2
Nn5g29250 Nelumbo nucifera HOM05D005790 ORTHO05D007464 7.0e-116 421.4 371 55.5
Atru.BG.234.p Acer truncatum HOM05D005790 ORTHO05D007464 3.0e-114 416.0 359 59.3
CsaV3_UNG233270 Cucumis sativus L. HOM05D005790 ORTHO05D007464 4.7e-112 408.7 368 57.3
Lj4A790T66 Lonicera japonica HOM05D005790 ORTHO05D007464 8.1e-112 407.9 319 63.3
Psat5g014800 Pisum sativum HOM05D005790 ORTHO05D007464 1.7e-106 390.2 218 89.0
Sabra09G0000400 Salix brachista HOM05D005790 ORTHO05D007464 4.1e-100 369.0 499 43.5
Ah.05g171860 Amaranthus hybridus HOM05D005790 ORTHO05D007464 2.6e-94 349.7 308 55.8
FAN27G0896 Fragaria x ananassa HOM05D005790 ORTHO05D007464 2.6e-94 349.7 391 48.8
TPR.G30295 Trifolium pratense HOM05D005790 ORTHO05D007464 4.2e-92 342.4 170 94.1
Atru.chr13.345 Acer truncatum HOM05D005790 ORTHO05D007464 1.2e-91 340.9 218 71.6
Mapoly0014s0217 Marchantia polymorpha HOM05D005790 ORTHO05D007464 8.4e-85 318.2 364 45.6
SMO147G0253 Selaginella moellendorffii HOM05D005790 ORTHO05D007464 1.2e-83 314.3 376 46.0
Aqoxy4G01228 Aquilegia oxysepala HOM05D005790 ORTHO05D007464 3.5e-83 312.8 307 51.1
Aa31LG4G5850 Aethionema arabicum HOM05D005790 ORTHO05D007464 1.8e-82 310.5 289 56.1
Pp3c20_12860 Physcomitrium patens HOM05D005790 ORTHO05D007464 1.8e-79 300.4 358 44.4
SalBow1G3128 Salvia bowleyana HOM05D005790 ORTHO05D007464 3.1e-79 299.7 215 64.7
Psat5g014760 Pisum sativum HOM05D005790 ORTHO05D007464 1.3e-74 284.3 141 93.6
CDE05G1328 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 1.1e-71 274.6 168 70.2
TPR.G30287 Trifolium pratense HOM05D005790 ORTHO05D007464 9.0e-71 271.6 152 88.2
Oeu061776.2 Olea europaea HOM05D005790 ORTHO05D000708 7.6e-70 268.5 366 41.0
Hund17229 Selenicereus undatus HOM05D005790 ORTHO05D007464 6.7e-66 255.4 146 74.7
Actinidia29793 Actinidia chinensis HOM05D005790 ORTHO05D007464 7.4e-65 251.9 400 41.0
Nitab4.5_0000402g0120 Nicotiana tabacum HOM05D005790 ORTHO05D007464 3.1e-63 246.5 227 56.8
RcHm_v2.0_Chr6g0302231 Rosa chinensis HOM05D005790 ORTHO05D007464 2.7e-59 233.4 228 51.8
RcHm_v2.0_Chr4g0408871 Rosa chinensis HOM05D005790 ORTHO05D007464 1.3e-58 231.1 359 40.4
MBI09_g08426_MAGBIO Magnolia biondii HOM05D005790 ORTHO05D007464 1.0e-53 214.9 356 38.5
Nitab4.5_0000402g0130 Nicotiana tabacum HOM05D005790 ORTHO05D007464 1.1e-52 211.5 121 78.5
Gorai.010G006300 Gossypium raimondii HOM05D005790 ORTHO05D007464 1.8e-50 204.1 114 77.2
TWI36G0035 Tripterygium wilfordii HOM05D005790 ORTHO05D007464 5.7e-49 199.1 123 69.9
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 3.4e-46 189.9 563 27.9
Cpa.g.sc140.27 Carica papaya HOM05D005790 ORTHO05D007464 8.5e-45 185.3 119 68.1
CBR_g24442 Chara braunii HOM05D005790 ORTHO05D007464 4.7e-43 179.5 241 41.1
RcHm_v2.0_Chr6g0302371 Rosa chinensis HOM05D005790 ORTHO05D007464 8.8e-42 175.3 180 52.2
Cre02.g076850 Chlamydomonas reinhardtii HOM05D005790 ORTHO05D007464 3.5e-38 163.3 422 30.1
Aa31LG4G5860 Aethionema arabicum HOM05D005790 ORTHO05D007464 8.5e-37 158.7 99 71.7
AagrBONN_evm.TU.Sc2ySwM_369.164 Anthoceros agrestis HOM05D005790 ORTHO05D007464 1.0e-34 151.8 270 34.8
SEGI_31412 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 4.8e-32 142.9 212 42.5
Cfa025606 Carpinus fangiana HOM05D005790 ORTHO05D007464 1.0e-29 135.2 369 30.6
Lj4C790T17 Lonicera japonica HOM05D005790 ORTHO05D007464 7.5e-25 119.0 79 68.4
RcHm_v2.0_Chr6g0302301 Rosa chinensis HOM05D005790 ORTHO05D007464 9.1e-23 112.1 84 60.7
MD15G1017900 Malus domestica HOM05D005790 ORTHO05D007464 5.9e-22 109.4 189 36.0
MD15G1018000 Malus domestica HOM05D005790 ORTHO05D007464 5.9e-22 109.4 189 36.0
HPP92_020941 Vanilla planifolia HOM05D005790 ORTHO05D007464 2.5e-20 104.0 144 36.8
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 3.3e-20 103.6 400 26.5
Cpa.g.sc140.30 Carica papaya HOM05D005790 ORTHO05D007464 3.6e-19 100.1 54 83.3
TAR625G0591 Trochodendron aralioides HOM05D000460 ORTHO05D000333 6.8e-18 95.9 103 47.6
HPP92_020940 Vanilla planifolia HOM05D005790 ORTHO05D007464 9.8e-17 92.0 55 76.4
SEGI_12232 Sequoiadendron giganteum HOM05D005790 ORTHO05D007464 2.4e-15 87.4 56 62.5
TPR.G40727 Trifolium pratense HOM05D005790 ORTHO05D007464 9.5e-12 75.5 43 83.7
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 4.0e-10 70.1 358 23.2
Hma1.2p1_1776F.1_g301940 Hydrangea macrophylla HOM05D005790 ORTHO05D007464 5.2e-10 69.7 40 75.0
Migut.D00238 Erythranthe guttata HOM05D002561 ORTHO05D006466 4.4e-09 66.6 355 25.1
MCO14G170 Micromonas commoda HOM05D005790 ORTHO05D007464 5.8e-09 66.2 334 22.8
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.3e-08 65.1 324 23.5
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 2.2e-08 64.3 352 26.1
MCO01G363 Micromonas commoda HOM05D002561 ORTHO05D006466 4.9e-08 63.2 361 23.3
VMungo0331G1008 Vigna mungo HOM05D005790 ORTHO05D007464 6.4e-08 62.8 46 58.7
AUR62008772 Chenopodium quinoa HOM05D002561 ORTHO05D006466 8.3e-08 62.4 365 22.5
COL.COLO4_38433 Corchorus olitorius HOM05D005790 ORTHO05D030850 8.3e-08 62.4 28 78.6
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 8.3e-08 62.4 309 23.0
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 1.4e-07 61.6 355 22.8
HanXRQChr05g0140561 Helianthus annuus HOM05D002561 ORTHO05D006466 1.4e-07 61.6 362 23.2
Thecc.02G185400 Theobroma cacao HOM05D002561 ORTHO05D006466 1.4e-07 61.6 362 23.5
Duzib052G0349 Durio zibethinus HOM05D002561 ORTHO05D006466 2.4e-07 60.8 357 24.4
Gohir.D02G177700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 2.4e-07 60.8 355 22.5
CDE05G1505 Ceratophyllum demersum HOM05D005790 ORTHO05D007464 3.2e-07 60.5 41 63.4
Peaxi162Scf00153g01716 Petunia axillaris HOM05D003335 ORTHO05D003853 4.1e-07 60.1 329 24.3
SMO347G0106 Selaginella moellendorffii HOM05D002561 ORTHO05D006466 5.4e-07 59.7 354 22.0
ATR0665G052 Amborella trichopoda HOM05D002561 ORTHO05D006466 7.0e-07 59.3 361 22.2
Manes.03G159500 Manihot esculenta HOM05D003335 ORTHO05D003853 7.0e-07 59.3 333 21.0
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 1.6e-06 58.2 315 22.9
GSVIVG01020601001 Vitis vinifera HOM05D002561 ORTHO05D006466 2.0e-06 57.8 366 22.7
Actinidia29794 Actinidia chinensis HOM05D005790 ORTHO05D030850 2.7e-06 57.4 31 64.5
HPP92_000278 Vanilla planifolia HOM05D002561 ORTHO05D006466 3.5e-06 57.0 366 22.4
PSO210G7210 Papaver somniferum HOM05D002561 ORTHO05D006466 4.6e-06 56.6 359 22.6
Carub.0007s1225 Capsella rubella HOM05D002561 ORTHO05D006466 6.0e-06 56.2 366 23.8
Gohir.A03G154700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 6.0e-06 56.2 96 33.3
SalBow3G1035 Salvia bowleyana HOM05D003335 ORTHO05D003853 7.8e-06 55.8 309 22.3


User provided reference genes

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