Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 2379.7 1330 100.0
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 2021.1 1334 84.6
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 2011.1 1335 85.3
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1999.2 1371 83.8
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1837.4 1342 76.4
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1815.4 1344 75.0
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1804.3 1339 77.4
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1803.9 1342 73.7
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1791.9 1341 73.9
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1756.9 1366 70.9
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1732.2 1406 70.1
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1619.8 1277 70.3
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1593.6 1374 65.4
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1591.6 1362 64.8
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1587.8 1368 64.0
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1582.8 1361 64.1
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1552.0 1366 63.8
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1530.8 1362 62.3
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1521.9 1360 61.8
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1520.8 1362 62.2
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1518.1 1364 62.0
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1516.1 1360 61.5
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1508.8 1364 61.1
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1498.4 1366 60.9
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1480.3 1346 61.4
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1479.2 1361 60.9
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1475.7 1360 59.7
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1470.3 1361 60.5
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1469.1 1362 60.4
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1468.4 1398 59.3
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1464.9 1359 60.4
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1456.0 1375 59.3
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1454.5 1366 59.5
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1448.7 1355 60.6
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1448.3 1369 58.7
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1442.6 1356 60.0
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1442.2 1371 58.9
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1429.5 1389 58.7
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1426.0 1372 58.2
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1425.6 1367 59.2
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1417.5 1351 58.1
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1417.1 1356 59.0
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1415.2 1356 59.0
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1414.4 1347 58.8
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1412.5 1353 58.0
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1403.7 1353 57.8
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1381.3 1363 56.4
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1378.6 1381 56.7
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1377.8 1332 57.9
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1375.1 1369 58.8
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1371.7 1368 58.8
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1369.8 1356 57.2
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1368.2 1368 59.1
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1367.4 1378 57.8
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1359.7 1361 55.5
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1353.6 1192 61.1
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1347.4 1367 55.7
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1344.3 1283 59.2
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1333.9 1357 55.7
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1331.2 1364 55.9
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1330.5 1364 55.9
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1329.3 1324 56.9
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1328.2 1359 55.9
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1324.7 1329 58.5
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1324.3 1324 56.6
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1323.5 1327 56.6
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1321.6 1327 56.7
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1320.4 1326 56.6
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1318.9 1199 59.7
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1316.6 1335 55.9
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1316.2 1368 54.9
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1310.8 1324 56.2
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1310.4 1326 55.8
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1309.7 1370 55.3
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1308.9 1321 56.5
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1306.2 1366 55.4
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1305.4 1357 54.8
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1303.5 1368 56.3
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1296.6 1391 54.9
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1296.6 1238 57.8
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1296.6 1373 54.9
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1294.6 1324 55.9
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1294.3 1304 58.7
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1285.0 1360 55.4
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1255.0 1346 52.9
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1253.4 1194 58.5
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1228.8 1368 53.6
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1205.7 1075 62.6
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1199.1 1061 61.4
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1190.6 1072 60.7
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 0.0e+00 1188.7 950 68.1
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1159.4 1071 59.4
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1154.8 1415 50.4
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1151.0 1380 50.3
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1107.4 1363 50.0
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1105.5 1066 57.8
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1103.2 977 61.6
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1085.1 1376 48.0
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1076.2 1070 61.4
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 1.3e-295 1020.4 985 56.5
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 1.2e-290 1003.8 1344 45.3
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 5.1e-289 998.4 1196 49.3
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 1.6e-282 976.9 1335 49.7
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 1.6e-282 976.9 1361 47.5
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.5e-260 901.7 765 62.9
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.7e-247 859.4 962 51.6
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.4e-241 840.9 1033 48.2
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.9e-239 833.2 1181 45.7
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.0e-237 827.0 717 60.9
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 2.4e-230 803.5 785 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 4.0e-225 786.2 1258 41.5
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 4.9e-223 779.2 1120 44.2
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 1.4e-209 734.6 765 53.6
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.4e-198 697.2 843 49.7
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 2.5e-195 687.2 1252 37.7
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.2e-184 651.7 504 70.0
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 1.6e-173 614.8 405 83.2
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.2e-168 598.6 458 71.2
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 2.3e-156 557.8 1069 40.6
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 9.4e-142 509.2 410 69.5
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 7.5e-139 499.6 1270 31.5
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 3.6e-133 480.7 619 46.2
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 1.2e-115 422.5 345 70.4
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.2e-107 396.0 361 61.2
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.3e-102 377.5 328 60.4
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.5e-86 325.1 364 54.7
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 1.4e-84 319.3 278 68.7
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 1.1e-78 299.7 434 43.1
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 6.4e-74 283.9 908 28.3
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 1.3e-63 249.6 913 26.6
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.7e-58 232.6 607 36.1
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 8.5e-50 203.8 249 50.6
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 1.1e-38 166.8 113 70.8
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 5.5e-33 147.9 232 40.1
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 1.6e-32 146.4 106 70.8
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 1.4e-28 133.3 82 80.5
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 2.4e-28 132.5 160 44.4
Medtr4g120490 Medicago truncatula HOM05D001406 ORTHO05D265975 9.1e-28 130.6 91 76.9
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 2.7e-27 129.0 113 59.3
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 2.9e-26 125.6 114 56.1
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 8.8e-23 114.0 195 42.1
Medtr6g046230 Medicago truncatula HOM05D000076 ORTHO05D264292 8.8e-23 114.0 74 78.4
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.5e-22 113.2 87 60.9
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.0e-15 90.5 81 58.0
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.0e-15 90.5 81 58.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.4e-14 85.5 71 62.0
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 3.4e-14 85.5 84 58.3
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 6.6e-10 71.2 89 46.1
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 1.9e-09 69.7 66 59.1
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 4.7e-08 65.1 58 62.1
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 6.8e-07 61.2 150 28.7
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 6.8e-07 61.2 62 51.6
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 8.9e-07 60.8 162 29.0
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 8.9e-07 60.8 164 27.4
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 8.9e-07 60.8 162 29.0
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 2.0e-06 59.7 150 27.3
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 2.0e-06 59.7 150 26.7
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 2.6e-06 59.3 162 26.5
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 2.6e-06 59.3 150 27.3
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 2.6e-06 59.3 150 28.0
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 3.4e-06 58.9 135 27.4
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 3.4e-06 58.9 150 26.7
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 4.4e-06 58.5 134 26.9
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 4.4e-06 58.5 150 27.3
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 4.4e-06 58.5 150 28.0
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 4.4e-06 58.5 150 28.0
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 4.4e-06 58.5 135 26.7
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 5.8e-06 58.2 150 27.3
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 5.8e-06 58.2 135 25.2
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 7.5e-06 57.8 134 26.9
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 7.5e-06 57.8 134 26.1
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 7.5e-06 57.8 134 26.1
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 7.5e-06 57.8 135 25.9
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 9.8e-06 57.4 150 26.7
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 9.8e-06 57.4 135 26.7
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 9.8e-06 57.4 134 26.1


User provided reference genes

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