Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 3.9e-67 258.1 137 100.0
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.5e-63 246.1 137 94.2
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 4.5e-63 244.6 137 93.4
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.7e-62 242.7 137 92.0
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 3.8e-62 241.5 137 92.0
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 3.5e-60 235.0 135 89.6
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 1.8e-59 232.6 135 88.9
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 2.3e-59 232.3 134 91.8
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 3.9e-59 231.5 135 88.9
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 8.2e-57 223.8 137 86.9
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 1.8e-56 222.6 131 88.5
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 1.2e-55 219.9 131 86.3
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 4.2e-53 211.5 124 87.9
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 7.9e-52 207.2 137 81.8
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 2.3e-51 205.7 124 84.7
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 6.7e-51 204.1 135 78.5
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 6.7e-51 204.1 124 84.7
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 6.7e-51 204.1 138 82.6
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 1.1e-50 203.4 135 78.5
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 1.1e-50 203.4 124 85.5
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.5e-50 203.0 124 83.9
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 1.5e-50 203.0 124 83.9
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.9e-50 202.6 124 84.7
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 2.5e-50 202.2 124 84.7
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 9.7e-50 200.3 124 83.9
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 9.7e-50 200.3 124 83.9
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 4.8e-49 198.0 128 82.0
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 4.8e-49 198.0 126 84.1
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 6.3e-49 197.6 122 84.4
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 8.2e-49 197.2 126 83.3
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.1e-48 196.8 128 82.0
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.1e-48 196.8 135 74.8
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 1.1e-48 196.8 124 83.1
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 1.4e-48 196.4 127 78.7
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 2.4e-48 195.7 126 84.1
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.4e-48 195.7 126 84.1
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 3.1e-48 195.3 142 73.9
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 3.1e-48 195.3 125 81.6
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 5.3e-48 194.5 127 79.5
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 6.9e-48 194.1 124 80.6
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 6.9e-48 194.1 124 79.8
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 6.9e-48 194.1 123 80.5
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 9.0e-48 193.7 129 80.6
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 9.0e-48 193.7 126 82.5
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.5e-47 193.0 127 76.4
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.5e-47 193.0 124 80.6
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.6e-47 192.2 124 82.3
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 3.4e-47 191.8 130 74.6
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 5.9e-47 191.0 128 79.7
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 7.7e-47 190.7 125 80.8
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.0e-46 190.3 125 80.0
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 1.3e-46 189.9 128 78.1
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.3e-46 189.9 127 74.8
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.3e-46 189.9 125 80.8
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.7e-46 189.5 127 76.4
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 2.2e-46 189.1 104 94.2
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.2e-46 189.1 124 76.6
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 2.2e-46 189.1 124 76.6
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 2.2e-46 189.1 124 76.6
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 3.8e-46 188.3 124 76.6
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 3.8e-46 188.3 124 76.6
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 3.8e-46 188.3 127 75.6
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 3.8e-46 188.3 127 78.7
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 6.5e-46 187.6 122 76.2
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 8.5e-46 187.2 127 74.8
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 8.5e-46 187.2 127 74.8
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 8.5e-46 187.2 122 81.1
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.1e-45 186.8 129 76.0
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 1.4e-45 186.4 124 75.8
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.9e-45 186.0 124 78.2
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.9e-45 186.0 127 74.0
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 2.5e-45 185.7 127 74.8
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 3.2e-45 185.3 121 77.7
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.2e-44 183.3 124 75.0
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.2e-44 183.3 127 73.2
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.6e-44 183.0 128 75.0
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 3.6e-44 181.8 124 76.6
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 7.9e-44 180.6 124 75.0
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 7.9e-44 180.6 142 68.3
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.0e-43 180.3 125 74.4
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.4e-43 179.9 131 74.0
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 1.4e-43 179.9 124 77.4
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 3.0e-43 178.7 128 73.4
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 3.0e-43 178.7 125 76.0
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.0e-43 178.7 105 83.8
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 3.0e-43 178.7 134 70.1
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 8.8e-43 177.2 139 69.1
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.1e-42 176.8 126 73.0
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.5e-42 176.4 128 72.7
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.5e-42 175.6 124 73.4
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 3.3e-42 175.3 128 72.7
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 5.7e-42 174.5 124 69.4
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 7.4e-42 174.1 126 72.2
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 8.2e-41 170.6 126 71.4
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.4e-40 169.9 135 70.4
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 1.8e-40 169.5 127 69.3
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 2.4e-40 169.1 165 58.8
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 4.1e-40 168.3 130 70.8
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 6.9e-40 167.5 105 79.0
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 9.1e-40 167.2 122 68.9
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 2.0e-39 166.0 127 67.7
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 2.0e-39 166.0 124 74.2
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.4e-39 165.2 135 69.6
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 3.4e-39 165.2 105 78.1
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 4.5e-39 164.9 117 69.2
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 5.9e-39 164.5 94 89.4
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 8.5e-38 160.6 125 68.0
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 1.1e-37 160.2 127 67.7
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.1e-37 160.2 124 66.9
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 2.5e-37 159.1 119 70.6
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 3.2e-37 158.7 122 68.0
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 5.5e-37 157.9 111 70.3
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 7.2e-37 157.5 127 68.5
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 7.2e-37 157.5 127 68.5
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 7.2e-37 157.5 127 68.5
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.2e-36 156.8 165 55.2
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.1e-36 156.0 154 60.4
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 4.7e-36 154.8 127 66.9
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 6.1e-36 154.5 112 68.8
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 7.9e-36 154.1 87 86.2
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.0e-35 153.7 112 69.6
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.4e-35 153.3 115 66.1
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 3.0e-35 152.1 124 62.1
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 3.0e-35 152.1 124 62.1
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 5.1e-35 151.4 127 63.0
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 5.1e-35 151.4 90 81.1
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 6.7e-35 151.0 87 82.8
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.2e-33 146.0 108 63.9
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 6.3e-33 144.4 124 66.1
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 1.1e-32 143.7 158 53.2
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 9.1e-32 140.6 96 74.0
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 9.1e-32 140.6 112 58.0
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.2e-31 140.2 108 60.2
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.2e-31 140.2 114 58.8
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.5e-31 139.8 114 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.5e-31 138.7 114 58.8
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.2e-30 136.0 122 54.9
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 5.5e-29 131.3 90 72.2
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 9.4e-29 130.6 93 71.0
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 9.4e-29 130.6 103 57.3
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.2e-28 130.2 107 59.8
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 7.4e-26 120.9 80 75.0
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.8e-24 116.3 69 82.6
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 4.1e-24 115.2 92 65.2
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 9.1e-24 114.0 78 73.1
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 2.0e-23 112.8 126 54.8
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 3.8e-22 108.6 73 71.2
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 3.8e-22 108.6 82 64.6
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 8.5e-22 107.5 63 74.6
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 4.2e-21 105.1 105 47.6
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 3.4e-18 95.5 99 50.5
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 5.7e-18 94.7 114 40.4
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 2.2e-17 92.8 59 76.3
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 1.8e-16 89.7 89 47.2
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 4.5e-15 85.1 52 78.8
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 1.6e-12 76.6 122 38.5
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 2.1e-12 76.3 47 83.0
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 5.2e-11 71.6 95 35.8
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.2e-10 70.5 50 70.0
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 5.0e-06 55.1 33 78.8


User provided reference genes

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