Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 5042.6 2566 100.0
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 4222.2 2573 83.7
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 4194.8 2568 84.0
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 4134.7 2566 83.0
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 3600.4 2539 73.5
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 3597.0 2557 73.0
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 3577.3 2587 72.1
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 3307.3 2615 66.7
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 3262.6 2592 66.7
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 2943.3 2090 73.3
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 2778.0 1980 72.0
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2381.7 2613 50.7
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2275.0 2599 49.3
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2273.4 2593 49.7
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2269.6 2621 48.5
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2261.1 2603 49.6
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2258.8 2611 49.2
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2252.2 2629 48.1
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2241.1 2674 48.1
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2222.6 2623 48.1
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2167.1 2602 47.3
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2150.2 2609 47.5
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2138.2 2607 47.1
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2125.9 2620 45.9
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2125.1 2643 46.4
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2093.5 2605 46.4
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2077.0 2619 45.7
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 2025.0 2614 45.1
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2009.6 2609 45.2
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2002.3 2690 45.2
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1996.1 2603 44.9
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1994.5 2630 44.6
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1974.5 2673 43.8
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1963.0 2731 44.0
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1928.3 2247 48.2
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1914.4 2629 42.4
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1905.2 2597 44.6
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1888.2 2603 42.9
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1876.3 2595 44.2
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1872.1 2596 43.8
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1863.2 2605 42.9
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1862.0 2597 43.1
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1856.3 2607 44.0
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1824.3 2377 44.8
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1806.6 2612 42.0
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1792.7 2594 41.6
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1762.7 2598 41.0
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1760.7 2662 41.5
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1756.9 2631 41.0
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1746.9 2538 41.6
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1742.2 2617 40.8
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1737.6 2608 40.5
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1726.1 2613 40.6
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1722.2 2612 40.7
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1695.2 2666 40.0
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1689.1 2660 39.9
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1684.8 2605 40.2
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1683.7 2661 39.8
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1678.7 2560 41.1
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1675.6 2586 40.1
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1673.7 2632 40.1
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1672.1 2676 40.0
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1656.0 2595 40.6
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1655.6 2615 39.9
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1652.1 2636 40.3
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1638.2 2579 41.0
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1637.1 2553 40.1
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1630.9 2634 39.7
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1623.6 2764 38.1
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1610.1 2632 38.8
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1602.8 2671 39.3
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1568.1 2668 38.2
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1549.3 2661 37.8
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1530.8 2665 37.9
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1524.6 2698 37.1
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1516.9 2698 37.4
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1514.6 2447 38.6
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1499.6 1794 46.9
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1498.8 2591 37.5
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1480.7 2612 37.8
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1468.4 2343 39.1
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1424.1 2590 36.4
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1372.5 2664 35.7
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1356.7 2611 37.0
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1342.8 2055 40.6
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1333.2 2592 35.1
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1328.5 2295 37.5
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1318.1 2586 35.0
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1295.8 1755 43.1
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1239.6 2244 36.4
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1236.5 2348 35.4
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1229.2 2040 37.4
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1184.1 2222 35.6
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1146.0 2132 36.9
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1082.0 1800 39.2
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 2.0e-305 1053.9 2550 32.4
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 8.4e-288 995.3 1723 36.6
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 5.2e-229 800.0 616 69.2
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.4e-221 775.4 792 54.4
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.3e-216 758.8 912 47.7
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.8e-210 738.4 535 70.7
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 6.6e-200 703.4 810 47.4
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.2e-187 661.8 2752 25.9
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.8e-174 618.2 584 57.5
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.5e-172 612.5 606 57.6
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.0e-169 600.5 1228 33.2
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 6.9e-165 587.0 2721 25.4
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.5e-164 584.3 1145 34.5
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.3e-155 556.2 2740 24.7
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 2.4e-154 552.0 2576 23.9
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.6e-153 549.3 2565 25.2
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.4e-141 509.6 744 42.7
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.6e-137 495.0 1115 34.1
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 2.6e-132 478.8 1141 32.3
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 3.9e-128 464.9 566 47.3
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.2e-121 443.4 767 38.6
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.2e-113 416.8 482 52.7
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 9.1e-109 400.6 914 31.5
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 5.5e-106 391.3 668 40.7
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 2.3e-99 369.4 205 93.7
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.5e-98 366.7 492 43.1
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.2e-97 363.6 420 48.8
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.8e-97 362.5 678 36.7
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.8e-96 359.8 864 31.2
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 3.0e-88 332.4 357 52.9
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 2.0e-87 329.7 331 56.8
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.7e-81 308.5 468 43.2
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.4e-77 297.0 174 85.6
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.4e-64 253.1 392 38.8
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 6.4e-46 191.8 205 54.1
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.6e-44 185.7 530 27.5
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.0e-43 184.5 330 39.4
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.3e-43 184.1 351 34.2
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 9.6e-42 177.9 415 30.8
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 2.1e-41 176.8 242 42.6
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.5e-39 169.1 323 36.2
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 2.2e-38 166.8 190 52.1
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.9e-37 163.7 149 57.0
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 9.3e-37 161.4 209 43.5
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.0e-35 156.4 279 36.2
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 3.8e-30 139.4 87 78.2
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 2.5e-29 136.7 92 75.0
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 4.2e-29 136.0 212 41.0
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.2e-28 134.4 140 49.3
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 6.7e-27 128.6 181 42.5
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 6.7e-27 128.6 349 27.2
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 1.5e-26 127.5 124 48.4
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.3e-22 114.4 217 31.8
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 6.5e-22 112.1 229 35.4
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 2.3e-19 103.6 149 44.3
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 8.8e-19 101.7 345 26.7
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 3.7e-17 96.3 236 27.5
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.4e-16 93.6 121 47.1
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.5e-15 90.9 125 39.2
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 7.7e-15 88.6 106 48.1
arahy.Tifrunner.gnm1.ann1.PHJ7DT Arachis hypogaea HOM05D003876 ORTHO05D004560 3.8e-14 86.3 119 43.7
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.4e-13 84.3 189 30.2
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.2e-13 83.2 134 38.8
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 9.4e-13 81.6 89 55.1
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 9.4e-13 81.6 86 48.8
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 9.4e-13 81.6 86 48.8
Psat5g198960 Pisum sativum HOM05D000263 ORTHO05D000213 7.9e-12 78.6 63 73.0
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.0e-11 78.2 72 54.2
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 3.0e-11 76.6 112 36.6
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.1e-10 74.7 165 35.8
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 2.0e-10 73.9 90 53.3
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.1e-08 68.2 276 21.4
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 3.1e-08 66.6 57 57.9
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 5.3e-08 65.9 424 25.2
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-07 64.7 141 35.5
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 2.6e-07 63.5 54 55.6
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.5e-07 62.8 231 26.0
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 5.9e-07 62.4 47 63.8
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 3.8e-06 59.7 46 63.0


User provided reference genes

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