Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.2e-98 363.2 188 100.0
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.0e-90 335.9 189 93.1
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 8.8e-86 320.5 188 87.8
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 4.4e-85 318.2 188 86.2
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 5.7e-85 317.8 188 86.7
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.7e-84 316.2 188 86.2
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.8e-83 312.8 188 85.1
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 4.1e-83 311.6 188 86.7
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.8e-78 296.2 187 81.8
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 5.2e-78 294.7 191 80.6
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 7.5e-77 290.8 189 80.4
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.7e-76 289.7 187 80.2
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.8e-76 288.9 190 78.9
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 2.8e-76 288.9 185 79.5
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 4.8e-76 288.1 189 78.8
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.4e-75 286.6 190 78.4
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.8e-75 286.2 188 82.4
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 5.3e-75 284.6 189 78.3
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 3.5e-74 282.0 187 77.0
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 3.5e-74 282.0 187 78.1
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 3.5e-74 282.0 186 76.9
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 3.5e-74 282.0 189 78.3
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 5.9e-74 281.2 187 77.0
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.2e-73 279.3 186 75.3
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.9e-73 278.9 187 76.5
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 6.5e-73 277.7 186 75.3
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 8.5e-73 277.3 186 75.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.5e-72 275.8 187 75.9
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 2.5e-72 275.8 187 77.0
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.5e-72 275.8 187 77.0
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.5e-72 275.8 187 77.0
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 9.4e-72 273.9 184 78.3
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 9.4e-72 273.9 187 77.0
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.2e-71 273.5 188 74.5
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.2e-71 273.5 189 76.2
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 3.6e-71 271.9 189 74.1
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.8e-70 269.6 189 74.1
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 3.0e-70 268.9 185 75.1
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.0e-70 268.5 188 75.0
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.0e-70 268.5 189 73.5
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.0e-70 268.5 189 73.5
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 5.2e-70 268.1 185 76.8
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 5.2e-70 268.1 185 76.8
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.2e-69 266.9 186 73.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.2e-69 266.9 185 74.6
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.0e-69 266.2 185 75.1
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 2.6e-69 265.8 185 75.7
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 2.6e-69 265.8 189 74.1
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.4e-69 265.4 185 75.1
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 4.4e-69 265.0 188 73.4
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 9.8e-69 263.8 188 76.1
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 3.7e-68 261.9 192 72.9
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 4.8e-68 261.5 191 72.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 6.3e-68 261.2 214 66.4
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 6.3e-68 261.2 176 76.1
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.1e-67 260.4 189 74.6
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.8e-67 259.6 188 71.3
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 3.1e-67 258.8 190 75.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.2e-66 256.9 188 72.9
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.6e-66 256.5 192 73.4
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 2.7e-66 255.8 191 70.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 3.5e-66 255.4 187 74.3
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.5e-66 255.4 183 74.3
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.7e-65 253.1 187 72.7
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.3e-65 252.7 182 76.4
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.3e-65 252.7 187 70.6
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 2.9e-65 252.3 183 72.7
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.9e-65 252.3 183 73.8
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 5.0e-65 251.5 190 70.5
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 5.0e-65 251.5 172 75.6
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.1e-64 250.4 188 72.3
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.9e-64 249.6 186 70.4
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 5.5e-64 248.1 187 69.5
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 9.5e-64 247.3 188 72.9
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 9.5e-64 247.3 187 70.1
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 2.8e-63 245.7 184 70.1
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.6e-63 245.4 203 66.5
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 6.1e-63 244.6 185 70.3
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.3e-62 242.7 169 73.4
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 3.0e-62 242.3 189 68.3
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 3.0e-62 242.3 161 79.5
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.0e-62 242.3 188 67.6
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 8.8e-62 240.7 188 66.5
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.6e-61 239.2 189 67.7
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 4.4e-61 238.4 189 67.7
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 7.5e-61 237.7 192 69.8
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.7e-60 236.5 191 68.6
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.7e-60 236.5 191 68.6
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 2.2e-60 236.1 190 67.9
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 6.3e-60 234.6 190 67.4
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 6.3e-60 234.6 190 67.4
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 6.3e-60 234.6 190 67.4
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 8.3e-60 234.2 189 66.7
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.4e-59 233.4 189 66.7
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.4e-59 233.4 160 76.2
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.8e-59 233.0 189 67.2
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 3.1e-59 232.3 193 64.2
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 4.1e-59 231.9 185 69.2
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 4.1e-59 231.9 190 66.3
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 5.4e-59 231.5 189 68.8
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 7.0e-59 231.1 225 58.2
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.2e-58 230.3 204 62.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.0e-58 229.6 180 68.9
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 5.9e-58 228.0 125 91.2
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 7.8e-58 227.6 190 65.3
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 1.0e-57 227.3 189 65.1
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 3.8e-57 225.3 126 91.3
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 5.0e-57 224.9 216 58.8
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 6.6e-57 224.6 189 67.2
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 8.6e-57 224.2 194 66.0
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 8.6e-57 224.2 187 67.9
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 9.5e-56 220.7 148 77.7
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-55 220.3 155 74.2
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 1.6e-55 219.9 186 66.7
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.6e-55 218.8 156 73.1
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 4.7e-55 218.4 143 77.6
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 6.1e-55 218.0 143 76.9
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 6.1e-55 218.0 143 76.9
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 1.8e-54 216.5 125 87.2
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 4.0e-54 215.3 196 62.2
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 4.0e-54 215.3 146 76.7
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.5e-53 213.4 187 64.2
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 2.2e-52 209.5 141 76.6
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 2.9e-52 209.1 195 60.0
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.9e-52 209.1 156 74.4
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 3.7e-52 208.8 124 83.1
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 8.3e-52 207.6 125 84.0
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 4.1e-51 205.3 154 70.8
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 9.2e-51 204.1 185 65.4
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.2e-50 203.8 185 59.5
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.0e-50 203.0 146 76.7
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 2.0e-50 203.0 154 68.2
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 7.8e-50 201.1 154 67.5
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 7.8e-50 201.1 185 57.8
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.7e-49 199.9 163 66.3
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 3.9e-49 198.7 152 70.4
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 5.0e-49 198.4 194 57.7
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 6.6e-49 198.0 174 60.9
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-48 197.2 152 69.1
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-48 196.8 152 69.1
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 3.3e-48 195.7 132 72.7
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.2e-47 193.7 124 78.2
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 4.1e-43 178.7 195 53.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 7.8e-42 174.5 140 65.7
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.3e-41 173.7 192 52.6
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.5e-40 169.5 190 51.6
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 4.3e-40 168.7 125 67.2
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.1e-38 164.1 190 50.5
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 1.4e-38 163.7 190 53.2
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 9.9e-37 157.5 124 62.9
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.7e-36 156.8 125 63.2
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.2e-36 156.4 190 50.0
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.2e-34 150.6 113 67.3
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 2.3e-33 146.4 126 61.1
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.9e-33 145.6 176 47.2
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.1e-32 144.1 111 69.4
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 4.7e-31 138.7 96 75.0
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 4.0e-30 135.6 150 53.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 2.0e-29 133.3 119 64.7
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.8e-29 131.7 103 60.2
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-28 130.6 79 81.0
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.7e-25 120.2 69 87.0
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 7.3e-24 114.8 68 83.8
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.6e-23 113.6 68 83.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.2e-18 97.4 91 57.1
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.0e-17 94.4 53 84.9
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.3e-17 93.2 56 80.4
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 3.9e-17 92.4 122 46.7
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.9e-17 92.4 53 83.0
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 5.1e-17 92.0 85 61.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 6.6e-17 91.7 122 46.7
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.3e-16 89.4 47 91.5
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 2.8e-15 86.3 124 39.5
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 2.1e-10 70.1 79 54.4
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 8.7e-09 64.7 51 66.7
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.1e-08 64.3 78 42.3
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 7.4e-08 61.6 57 56.1
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.3e-07 60.8 57 56.1
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 3.7e-07 59.3 31 93.5
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 8.1e-07 58.2 57 54.4


User provided reference genes

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