Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.2e-264 916.0 470 100.0
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 3.0e-228 795.0 495 84.2
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 6.8e-212 740.7 506 78.3
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 5.4e-201 704.5 520 72.1
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 4.6e-200 701.4 519 73.0
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 2.6e-195 685.6 504 73.6
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 8.7e-191 670.6 508 71.5
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 3.2e-185 652.1 515 68.7
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 9.6e-174 614.0 513 65.7
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 7.9e-168 594.3 542 62.2
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.5e-166 589.3 551 61.9
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.3e-162 577.0 512 61.9
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 7.1e-161 571.2 503 62.0
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 1.6e-157 560.1 504 62.3
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 6.9e-156 554.7 409 75.8
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 8.5e-154 547.7 506 58.5
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 3.2e-153 545.8 500 59.2
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 4.2e-153 545.4 494 58.9
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 2.1e-152 543.1 483 62.7
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 8.8e-151 537.7 501 58.9
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 4.1e-148 528.9 515 56.7
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 5.3e-148 528.5 531 57.6
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.5e-147 526.9 505 59.2
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.0e-147 526.6 511 58.7
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 5.9e-147 525.0 521 57.2
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.7e-146 523.5 515 56.7
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 1.2e-144 517.3 508 57.5
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 9.1e-140 501.1 476 60.3
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.2e-139 500.7 490 59.2
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.7e-138 496.9 368 70.1
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.9e-138 496.1 540 53.7
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.5e-138 495.0 494 57.3
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 8.5e-138 494.6 502 55.8
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.1e-136 490.0 442 60.2
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.0e-135 487.6 481 58.8
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.4e-135 487.3 487 57.1
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 8.8e-135 484.6 334 75.7
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 7.4e-134 481.5 478 56.5
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 9.7e-134 481.1 477 56.6
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.2e-133 479.9 471 57.5
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.2e-133 479.9 512 55.1
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 4.8e-133 478.8 517 52.6
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.8e-132 476.9 509 54.2
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 5.3e-132 475.3 491 54.2
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.2e-130 469.9 478 56.3
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 3.8e-130 469.2 520 53.8
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 5.0e-130 468.8 485 54.4
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 5.0e-130 468.8 509 55.2
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.5e-129 466.5 447 58.2
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 5.5e-129 465.3 534 51.7
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 7.2e-129 464.9 546 50.2
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 2.0e-126 456.8 477 54.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 4.4e-126 455.7 510 51.4
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 4.8e-125 452.2 476 53.6
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 8.3e-125 451.4 559 49.9
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.4e-124 449.9 522 50.6
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 3.1e-124 449.5 519 50.7
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 2.0e-123 446.8 546 48.9
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 3.8e-122 442.6 558 47.1
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 8.5e-122 441.4 462 54.3
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.5e-122 441.4 451 53.9
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 5.5e-121 438.7 537 50.1
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 9.4e-121 438.0 497 50.3
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 2.1e-120 436.8 536 50.2
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 3.6e-120 436.0 480 52.5
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 3.6e-120 436.0 472 53.4
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.7e-120 435.6 519 50.3
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.8e-119 431.8 386 58.5
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 2.8e-117 426.4 434 55.8
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 6.3e-117 425.2 451 53.4
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.4e-116 424.1 372 59.4
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 9.1e-116 421.4 458 52.0
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 3.5e-115 419.5 461 51.6
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 1.7e-114 417.2 511 48.3
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.9e-113 413.7 434 53.7
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 9.5e-113 411.4 355 62.0
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 2.1e-112 410.2 427 53.6
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.3e-111 406.8 492 50.4
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 3.0e-111 406.4 462 51.9
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.2e-110 404.4 439 54.4
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.0e-110 403.7 341 62.8
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 3.4e-110 402.9 485 49.5
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 8.3e-109 398.3 471 51.6
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 2.4e-108 396.7 393 55.5
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.7e-107 393.3 419 52.5
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.9e-106 389.4 513 48.0
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 4.7e-104 382.5 415 53.7
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 5.8e-102 375.6 501 46.9
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.2e-100 368.2 450 51.1
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 6.4e-93 345.5 476 47.1
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.6e-91 340.9 386 52.3
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 6.2e-88 328.9 379 53.8
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.9e-87 325.1 377 53.3
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 5.8e-86 322.4 440 45.5
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.0e-83 312.4 217 73.3
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.3e-82 310.5 323 58.5
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 4.7e-80 302.8 186 79.0
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.3e-77 294.7 302 53.3
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 4.9e-77 292.7 299 53.2
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.4e-76 291.2 367 45.0
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.2e-75 288.1 310 51.9
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 7.3e-73 278.9 406 41.4
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.0e-66 256.9 292 51.4
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 4.0e-63 246.5 197 71.6
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 5.3e-63 246.1 234 58.5
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.6e-62 243.8 281 49.8
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 5.8e-62 242.7 185 65.9
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.2e-59 235.0 281 47.7
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 2.7e-59 233.8 508 34.3
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.3e-58 230.7 281 46.6
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 3.9e-58 229.9 197 58.9
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.9e-57 227.6 289 48.4
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 2.5e-57 227.3 320 42.2
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 2.1e-56 224.2 154 74.0
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 2.1e-56 224.2 281 46.6
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-55 221.9 144 74.3
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.0e-54 217.6 292 44.9
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.9e-52 211.1 279 47.7
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 7.9e-51 205.7 292 42.8
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.3e-50 204.9 164 62.2
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 3.0e-50 203.8 292 42.8
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 3.9e-50 203.4 292 42.5
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.3e-49 200.3 168 60.7
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 4.8e-48 196.4 164 61.6
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 8.2e-48 195.7 306 39.9
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-46 191.4 283 40.6
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.6e-46 190.7 165 60.6
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 8.4e-45 185.7 121 74.4
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.9e-41 174.5 170 53.5
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 5.7e-41 172.9 180 50.6
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 5.1e-34 149.8 275 37.1
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.0e-33 147.9 179 46.4
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 3.3e-33 147.1 256 34.8
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 7.4e-33 146.0 142 57.7
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 9.7e-33 145.6 100 79.0
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.0e-29 135.6 115 60.9
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.9e-28 131.3 194 41.2
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 5.5e-28 129.8 397 25.9
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.7e-24 117.1 174 41.4
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 5.0e-21 106.7 302 33.4
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.5e-20 105.1 122 45.9
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 4.2e-20 103.6 123 45.5
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 3.0e-18 97.4 48 85.4
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-17 95.5 88 51.1
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.3e-16 92.0 63 63.5
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.7e-16 91.7 179 30.7
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 4.8e-16 90.1 67 61.2
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 1.6e-11 75.1 137 37.2
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.6e-11 75.1 137 37.2
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 2.7e-11 74.3 189 32.3
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 1.8e-10 71.6 91 47.3
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 4.8e-08 63.5 41 78.0
QL05p021244 Quercus lobata HOM05D001353 ORTHO05D029171 6.3e-08 63.2 128 35.9
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 4.1e-07 60.5 39 71.8
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 4.5e-06 57.0 39 64.1
SHI11060 Sapria himalayana HOM05D001353 ORTHO05D005187 5.9e-06 56.6 54 61.1


User provided reference genes

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