Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 8.5e-118 427.2 240 100.0
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 7.5e-74 281.2 315 61.6
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 7.8e-71 271.2 315 59.7
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 3.0e-70 269.2 315 59.4
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 6.6e-70 268.1 318 58.8
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 1.9e-69 266.5 315 59.4
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 2.5e-69 266.2 315 58.4
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 5.6e-69 265.0 315 59.4
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 5.6e-69 265.0 315 59.4
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 9.5e-69 264.2 315 58.1
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 6.2e-68 261.5 318 57.2
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 4.0e-67 258.8 315 57.1
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 4.0e-67 258.8 315 56.8
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 2.0e-66 256.5 315 56.5
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 4.4e-66 255.4 315 56.2
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.3e-65 253.8 315 56.2
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.2e-65 253.1 318 56.6
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 6.4e-65 251.5 318 55.3
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 6.4e-65 251.5 306 58.2
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 3.2e-64 249.2 315 56.5
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 7.1e-64 248.1 315 54.6
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.6e-63 246.9 318 54.7
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.6e-63 246.9 315 55.2
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 3.5e-63 245.7 318 55.0
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 6.0e-63 245.0 315 54.6
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 7.8e-63 244.6 315 54.3
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.3e-62 243.8 315 54.6
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 1.7e-62 243.4 290 57.6
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 2.3e-62 243.0 315 54.9
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 3.9e-62 242.3 296 56.4
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 5.1e-62 241.9 315 55.2
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 6.6e-62 241.5 318 53.1
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 8.6e-62 241.1 315 55.2
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.1e-61 240.7 318 53.8
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 1.5e-61 240.4 315 53.3
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 1.9e-61 240.0 293 56.3
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 2.5e-61 239.6 315 54.6
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 4.3e-61 238.8 315 53.7
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 7.3e-61 238.0 315 54.0
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.2e-60 237.3 315 53.3
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 1.2e-60 237.3 315 54.3
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 1.6e-60 236.9 315 53.7
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 2.8e-60 236.1 317 54.6
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 2.8e-60 236.1 317 54.6
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 2.8e-60 236.1 336 52.1
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 3.6e-60 235.7 315 52.4
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 6.2e-60 235.0 319 54.2
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 6.2e-60 235.0 319 54.2
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 6.2e-60 235.0 315 53.3
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 6.2e-60 235.0 315 52.7
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 6.2e-60 235.0 313 53.7
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 8.1e-60 234.6 315 53.7
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 8.1e-60 234.6 315 52.7
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 8.1e-60 234.6 315 54.3
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 1.1e-59 234.2 315 53.3
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 1.1e-59 234.2 315 53.3
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 1.1e-59 234.2 315 53.3
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 1.4e-59 233.8 315 53.0
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.4e-59 233.8 318 52.8
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 3.1e-59 232.6 315 53.0
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 1.2e-58 230.7 315 53.3
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.2e-58 230.7 317 52.1
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 2.0e-58 229.9 318 52.8
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 5.8e-58 228.4 296 54.4
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 9.9e-58 227.6 315 51.7
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 2.2e-57 226.5 315 52.4
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.8e-57 225.7 296 55.4
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 3.8e-57 225.7 318 51.3
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 4.9e-57 225.3 315 53.3
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 4.9e-57 225.3 296 55.4
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 4.9e-57 225.3 315 51.7
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 6.4e-57 224.9 315 50.8
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 1.9e-56 223.4 291 53.6
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 2.4e-56 223.0 244 59.4
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.4e-56 223.0 315 53.0
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.4e-56 223.0 296 55.1
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 7.1e-56 221.5 315 52.7
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 9.3e-56 221.1 296 53.7
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 9.3e-56 221.1 296 53.7
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 9.3e-56 221.1 315 52.1
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 1.2e-55 220.7 315 52.1
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 1.6e-55 220.3 315 50.5
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 2.1e-55 219.9 315 52.4
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.0e-54 217.6 355 47.6
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.7e-54 216.9 315 51.4
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 3.9e-54 215.7 315 51.4
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 1.5e-53 213.8 315 50.5
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 1.9e-53 213.4 294 53.1
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 3.3e-53 212.6 315 51.1
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 3.3e-53 212.6 315 50.5
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.6e-52 210.3 295 51.2
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 1.6e-52 210.3 315 51.1
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.6e-52 210.3 315 50.5
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 2.8e-52 209.5 315 50.5
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 3.6e-52 209.1 315 49.8
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 8.1e-52 208.0 296 50.3
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 1.1e-51 207.6 315 49.5
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 1.8e-51 206.8 315 48.9
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 2.4e-51 206.5 315 50.8
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 9.0e-51 204.5 343 46.6
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.0e-50 203.4 315 48.9
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 3.4e-50 202.6 315 48.6
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 3.4e-50 202.6 275 52.7
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.7e-49 200.3 321 47.4
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.2e-49 199.9 315 47.9
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 2.9e-49 199.5 290 51.7
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 1.1e-48 197.6 315 49.5
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 5.4e-48 195.3 347 45.5
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 9.3e-48 194.5 294 47.3
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 9.3e-48 194.5 342 44.7
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 1.6e-47 193.7 315 48.9
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 4.6e-47 192.2 315 47.6
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 6.0e-47 191.8 318 47.2
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 1.0e-46 191.0 296 49.7
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 1.0e-46 191.0 296 49.3
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 1.3e-44 184.1 301 46.8
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 2.1e-44 183.3 296 46.6
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 1.1e-43 181.0 312 44.9
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.4e-43 180.6 275 48.7
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 4.0e-43 179.1 315 46.0
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 1.2e-42 177.6 315 45.7
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 6.4e-41 171.8 294 43.9
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.9e-40 170.2 311 41.8
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 7.9e-39 164.9 314 43.6
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 2.1e-36 156.8 294 41.8
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 1.6e-31 140.6 302 41.4
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 2.7e-31 139.8 356 35.4
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 3.9e-30 136.0 299 39.8
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 7.4e-21 105.1 135 52.6
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.1e-16 91.3 94 61.7
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 6.7e-14 82.0 154 42.9
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 4.8e-12 75.9 46 93.5
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.8e-11 73.9 103 51.5
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 2.0e-10 70.5 83 54.2
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 4.5e-10 69.3 78 55.1
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 5.9e-10 68.9 74 59.5
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 1.9e-08 63.9 211 32.2
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 4.2e-08 62.8 202 34.7
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 3.6e-07 59.7 243 29.2
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 6.7e-06 55.5 290 28.3


User provided reference genes

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