Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 1.2e-161 573.2 290 100.0
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 4.0e-154 548.1 290 94.8
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 1.1e-151 540.0 290 92.4
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 3.5e-150 535.0 289 91.3
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 2.3e-149 532.3 289 90.7
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 7.3e-148 527.3 294 90.8
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 7.3e-148 527.3 289 90.0
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 9.2e-143 510.4 290 86.9
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 8.6e-141 503.8 258 97.3
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 6.8e-138 494.2 289 85.8
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 5.8e-137 491.1 257 96.5
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 1.9e-135 486.1 289 82.7
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 4.2e-135 485.0 290 80.7
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 9.3e-135 483.8 288 82.3
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 2.1e-134 482.6 290 81.0
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 4.6e-134 481.5 289 82.0
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 4.6e-134 481.5 290 80.7
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 5.6e-132 474.6 289 81.0
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 1.6e-131 473.0 290 78.6
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 1.8e-130 469.5 291 79.0
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.0e-130 468.4 288 79.9
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 9.0e-130 467.2 291 79.4
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.6e-129 465.7 289 78.9
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 3.4e-129 465.3 289 78.9
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 4.4e-129 464.9 289 77.5
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 4.4e-129 464.9 289 78.5
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 5.8e-129 464.5 290 77.9
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 7.6e-129 464.2 290 76.9
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 7.6e-129 464.2 290 77.9
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 9.9e-129 463.8 290 79.3
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 9.9e-129 463.8 289 78.9
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.7e-128 463.0 287 79.4
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 2.2e-128 462.6 287 78.4
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 2.2e-128 462.6 302 76.5
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 2.2e-128 462.6 290 77.9
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 3.8e-128 461.8 290 79.0
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 4.9e-128 461.5 289 77.9
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 4.9e-128 461.5 287 79.1
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 6.4e-128 461.1 290 76.2
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 6.4e-128 461.1 289 77.9
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.1e-127 460.3 290 75.9
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.1e-127 460.3 287 76.3
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 1.1e-127 460.3 287 78.7
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.1e-127 460.3 284 79.2
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 1.4e-127 459.9 289 77.9
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.4e-127 459.9 290 75.9
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.9e-127 459.5 289 77.5
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 1.9e-127 459.5 290 77.9
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.9e-127 459.5 290 76.9
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.4e-127 459.1 289 77.5
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 2.4e-127 459.1 290 77.6
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 4.2e-127 458.4 289 77.9
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.2e-127 458.4 289 77.5
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 5.4e-127 458.0 287 79.1
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.2e-126 456.8 289 78.2
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 2.1e-126 456.1 287 78.4
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 2.1e-126 456.1 290 77.2
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 3.5e-126 455.3 289 78.2
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 4.6e-126 454.9 290 77.9
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 6.0e-126 454.5 289 76.5
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 6.0e-126 454.5 287 78.0
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 7.9e-126 454.1 290 76.6
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 1.0e-125 453.8 289 76.8
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 1.0e-125 453.8 289 76.8
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 1.0e-125 453.8 289 77.2
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 1.0e-125 453.8 289 77.5
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 1.3e-125 453.4 289 76.8
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.3e-125 453.4 287 77.4
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.7e-125 453.0 287 77.0
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 2.3e-125 452.6 289 76.8
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.3e-125 452.6 288 77.8
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.3e-125 452.6 287 78.4
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 2.3e-125 452.6 287 78.4
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 5.1e-125 451.4 287 76.7
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 6.6e-125 451.1 289 74.0
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 6.6e-125 451.1 287 77.4
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.1e-124 450.3 288 77.4
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 1.5e-124 449.9 287 76.0
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.5e-124 449.9 287 77.0
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 1.9e-124 449.5 286 76.9
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 2.5e-124 449.1 289 73.7
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 2.5e-124 449.1 289 73.7
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 2.5e-124 449.1 289 73.7
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 3.3e-124 448.7 289 75.4
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 3.3e-124 448.7 290 75.2
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 4.3e-124 448.4 290 74.8
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 4.3e-124 448.4 289 74.4
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 5.6e-124 448.0 289 73.4
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 5.6e-124 448.0 289 76.1
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 5.6e-124 448.0 289 73.4
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.3e-123 446.8 289 75.8
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 1.3e-123 446.8 285 75.8
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 1.6e-123 446.4 289 75.8
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.6e-123 445.3 289 76.1
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 4.8e-123 444.9 287 77.4
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 8.1e-123 444.1 290 75.5
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 1.1e-122 443.7 290 74.5
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 1.1e-122 443.7 289 75.1
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.1e-122 443.7 287 77.0
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.8e-122 443.0 289 75.4
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 2.4e-122 442.6 289 75.4
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 3.1e-122 442.2 290 73.8
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 3.1e-122 442.2 287 77.0
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 9.0e-122 440.7 293 74.7
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.2e-121 440.3 289 74.0
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 3.4e-121 438.7 290 73.1
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 9.9e-121 437.2 287 76.0
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 1.3e-120 436.8 290 75.9
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.2e-120 436.0 290 74.5
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 2.9e-120 435.6 322 69.9
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 3.8e-120 435.3 306 71.9
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 6.4e-120 434.5 287 73.9
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 6.4e-120 434.5 287 76.0
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 8.4e-120 434.1 301 73.1
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 3.2e-119 432.2 290 73.8
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 4.2e-119 431.8 302 72.2
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 9.3e-119 430.6 288 74.0
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 4.6e-118 428.3 292 74.3
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 7.9e-118 427.6 291 73.5
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 1.3e-117 426.8 232 91.4
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 2.3e-117 426.0 289 73.0
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.3e-115 420.2 293 72.4
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.6e-115 419.9 289 72.7
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.8e-115 419.1 293 72.4
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.8e-114 416.4 291 72.5
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.4e-114 416.0 291 72.2
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 3.1e-114 415.6 307 68.1
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 4.0e-114 415.2 291 72.2
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 5.3e-114 414.8 283 72.1
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 5.8e-113 411.4 259 78.4
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 8.4e-112 407.5 272 73.9
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 3.5e-110 402.1 448 51.1
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 3.0e-109 399.1 307 68.4
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.9e-109 398.7 292 70.9
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 1.6e-107 393.3 297 68.4
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 3.1e-106 389.0 290 64.8
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 4.5e-105 385.2 290 64.1
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 7.6e-105 384.4 290 63.8
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 1.9e-103 379.8 232 80.2
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 2.5e-103 379.4 293 63.5
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.2e-102 377.1 294 64.6
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 1.8e-101 373.2 283 64.3
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 5.7e-100 368.2 229 78.6
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 5.1e-93 345.1 289 59.5
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 3.7e-91 339.0 298 61.4
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 4.4e-84 315.5 285 57.2
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.0e-81 306.6 203 74.4
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 8.8e-77 291.2 270 59.6
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 1.1e-71 274.2 287 48.8
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 2.1e-70 270.0 285 49.5
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 1.0e-69 267.7 281 49.8
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 1.1e-66 257.7 281 47.3
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 5.5e-63 245.4 164 72.6
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 7.3e-55 218.4 152 66.4
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 8.0e-54 214.9 151 72.2
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 3.2e-50 203.0 129 78.3
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 2.3e-48 196.8 111 83.8
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 1.7e-24 117.5 145 45.5
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 4.3e-23 112.8 152 44.1
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 9.6e-23 111.7 83 67.5
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 9.9e-20 101.7 79 67.1
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 2.9e-19 100.1 75 65.3
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 3.8e-19 99.8 79 67.1
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 6.4e-19 99.0 70 71.4
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 5.4e-18 95.9 66 69.7
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 9.3e-18 95.1 79 64.6
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 1.0e-16 91.7 52 80.8
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 1.3e-16 91.3 57 73.7
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 5.1e-16 89.4 58 72.4
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 5.1e-16 89.4 58 72.4
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 1.6e-14 84.3 80 58.8
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 1.6e-09 67.8 54 66.7
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 2.3e-08 63.9 98 41.8


User provided reference genes

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