Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 4.4e-311 1070.5 534 100.0
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.2e-233 813.1 533 75.8
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 8.2e-230 800.4 533 75.0
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 4.0e-208 728.4 532 69.2
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.5e-207 726.5 537 68.2
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 2.6e-207 725.7 535 67.3
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 4.3e-202 708.4 535 66.9
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 3.0e-200 702.2 538 65.1
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 3.4e-199 698.7 536 65.1
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 5.6e-162 575.1 546 54.6
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.4e-160 570.5 545 53.2
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.4e-160 569.7 544 54.4
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 4.5e-159 565.5 536 55.6
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.5e-159 565.5 547 54.5
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 2.7e-156 556.2 531 53.7
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 7.9e-156 554.7 536 53.0
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 3.9e-155 552.4 536 53.2
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 5.6e-154 548.5 542 53.7
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 7.4e-154 548.1 534 53.9
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 9.6e-154 547.7 536 56.2
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.4e-152 543.9 533 51.8
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.8e-152 543.5 535 53.5
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 3.1e-152 542.7 535 53.5
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.6e-151 539.7 538 51.3
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.4e-151 539.3 531 53.5
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 9.9e-151 537.7 542 51.3
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 1.3e-150 537.3 536 52.6
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.7e-150 537.0 537 52.9
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.2e-149 532.7 537 50.7
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.2e-149 532.7 537 52.7
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 9.3e-149 531.2 535 51.6
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.2e-148 530.8 531 51.6
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 1.3e-147 527.3 536 50.9
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.8e-147 526.9 537 51.6
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.9e-147 525.8 532 52.6
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 6.7e-147 525.0 536 52.1
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.5e-146 523.9 543 49.5
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.5e-146 523.1 531 52.4
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 7.4e-146 521.5 533 50.3
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 9.6e-146 521.2 547 51.4
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.6e-145 520.4 531 51.6
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.8e-145 519.6 541 51.2
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 3.1e-144 516.2 538 50.4
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 3.1e-144 516.2 540 50.2
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 5.8e-143 511.9 545 51.9
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 5.8e-143 511.9 538 49.4
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 2.2e-142 510.0 534 52.1
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 6.5e-142 508.4 542 51.3
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.4e-141 507.3 534 51.9
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.0e-139 501.1 542 51.1
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.3e-139 500.7 531 51.6
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.3e-139 500.7 533 48.4
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 5.1e-139 498.8 533 52.9
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 1.1e-138 497.7 538 49.4
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.5e-138 497.3 547 50.3
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.6e-137 493.8 530 47.5
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 2.2e-137 493.4 531 47.6
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 6.3e-137 491.9 532 49.6
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.4e-136 490.7 539 50.3
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.5e-135 487.3 536 46.8
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 2.0e-135 486.9 529 48.6
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.7e-134 483.8 528 50.4
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 3.8e-134 482.6 537 46.7
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.2e-133 479.6 545 46.8
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 5.5e-133 478.8 447 57.5
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 9.4e-133 478.0 548 47.1
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 3.6e-132 476.1 531 48.2
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.9e-132 474.9 547 48.4
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.4e-131 474.2 540 49.1
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 6.7e-131 471.9 538 48.9
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.3e-130 469.5 548 46.4
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 6.9e-128 461.8 539 46.4
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 8.5e-126 454.9 561 44.6
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 8.5e-126 454.9 538 46.3
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.2e-124 451.1 536 44.8
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.6e-124 450.7 536 44.8
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 2.7e-124 449.9 543 47.0
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 6.7e-123 445.3 542 46.3
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 9.7e-122 441.4 548 45.3
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.6e-119 433.3 554 44.8
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 4.5e-119 432.6 543 44.9
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 7.7e-119 431.8 536 46.1
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.0e-118 431.4 449 52.1
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.7e-118 430.6 562 43.6
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 7.2e-117 425.2 533 43.5
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 5.2e-115 419.1 536 43.5
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 1.7e-113 414.1 541 44.4
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 2.8e-113 413.3 539 43.2
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 5.3e-112 409.1 528 42.6
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 5.3e-112 409.1 553 41.4
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.2e-110 403.7 528 42.6
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-109 401.4 528 42.8
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.1e-109 401.4 528 42.8
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.1e-109 401.4 528 42.8
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.0e-107 392.9 593 39.6
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.2e-106 391.3 535 42.2
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 9.7e-106 388.3 529 41.6
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.7e-102 377.5 432 49.8
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.2e-101 372.9 528 40.0
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.2e-100 371.3 534 42.3
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.7e-100 369.4 516 41.1
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.4e-96 357.8 470 41.7
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.9e-89 332.8 583 37.7
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 8.0e-84 315.5 514 38.5
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-83 314.7 282 56.7
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 8.9e-83 312.0 548 37.8
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 7.0e-80 302.4 617 33.5
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.2e-79 301.6 207 71.5
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.0e-79 300.8 305 50.5
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 4.6e-79 299.7 488 38.5
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 7.8e-79 298.9 329 47.4
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 7.3e-69 265.8 283 47.0
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 4.7e-68 263.1 420 39.8
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.1e-61 241.9 228 50.4
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 7.3e-61 239.2 329 42.2
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.8e-59 234.6 578 32.0
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 3.8e-57 226.9 563 30.6
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 1.7e-46 191.4 562 28.5
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 6.9e-43 179.5 199 44.7
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.5e-42 178.3 425 30.1
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.2e-39 168.7 300 35.0
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 2.7e-39 167.5 532 27.1
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.4e-32 145.2 328 29.3
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 4.5e-26 123.6 104 52.9
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 3.5e-23 114.0 127 48.8
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.4e-19 102.1 105 48.6
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 5.0e-17 93.6 211 33.6
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 6.5e-17 93.2 204 32.4
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 7.2e-16 89.7 296 26.7
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-15 88.6 188 32.4
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.1e-15 88.2 136 36.0
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.7e-15 87.8 188 32.4
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 7.9e-15 86.3 96 46.9
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 7.9e-15 86.3 128 36.7
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 7.9e-15 86.3 59 64.4
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.5e-10 72.0 89 42.7
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.0e-10 71.6 69 53.6
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.5e-08 64.7 66 53.0
HanXRQChr04g0118861 Helianthus annuus HOM05D002702 ORTHO05D003416 2.5e-08 64.7 265 24.2
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.6e-07 60.8 65 43.1
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.7e-07 60.5 74 48.6
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.9e-07 59.7 119 33.6
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 1.0e-06 59.3 279 21.5
Aqoxy4G00362 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 1.8e-06 58.5 264 21.6
FAN14G1453 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.3e-06 58.2 49 61.2
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 2.3e-06 58.2 264 22.0
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.9e-06 57.4 60 46.7
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-06 56.6 84 33.3


User provided reference genes

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