Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 3.7e-113 411.8 243 100.0
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 5.8e-106 387.9 243 92.6
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 9.9e-106 387.1 243 95.1
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 9.2e-104 380.6 243 91.4
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.1e-103 379.4 244 91.0
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 7.8e-103 377.5 243 90.9
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.7e-102 376.3 243 92.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 8.1e-100 367.5 242 89.7
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 2.4e-99 365.9 245 79.6
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.4e-96 356.7 241 85.5
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 7.1e-96 354.4 241 83.0
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 7.1e-96 354.4 241 82.6
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.1e-95 352.8 241 85.1
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.3e-94 350.1 241 84.2
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.3e-94 349.4 237 76.4
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 3.0e-94 349.0 241 83.8
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 3.9e-94 348.6 246 85.0
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 6.6e-94 347.8 241 85.1
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 6.6e-94 347.8 241 85.1
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 6.6e-94 347.8 241 85.5
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.1e-93 347.1 241 83.0
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.5e-93 346.7 241 79.3
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.5e-93 346.7 238 76.1
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.9e-93 346.3 241 73.9
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 5.6e-93 344.7 241 82.2
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.3e-92 343.6 241 82.2
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 2.8e-92 342.4 241 82.6
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.6e-92 342.0 241 82.6
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 3.6e-92 342.0 238 84.0
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 6.2e-92 341.3 241 83.4
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 1.1e-91 340.5 238 81.5
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.4e-91 340.1 234 84.6
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 1.8e-91 339.7 241 73.4
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.4e-91 339.3 205 83.9
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.4e-91 339.3 238 75.6
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.1e-91 339.0 242 73.1
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 4.0e-91 338.6 241 80.1
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 6.9e-91 337.8 241 74.7
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.2e-90 337.0 241 80.1
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.5e-90 336.7 241 79.3
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.4e-90 335.5 241 81.3
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.4e-90 335.5 242 76.4
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 4.5e-90 335.1 236 79.2
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 9.9e-90 334.0 242 76.4
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.7e-89 333.2 238 73.5
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.7e-89 333.2 241 79.3
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.2e-89 332.8 238 73.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 72.7
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.2e-89 332.8 242 76.0
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.9e-89 332.4 238 80.7
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 2.9e-89 332.4 242 73.1
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.9e-89 331.6 242 72.7
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 4.9e-89 331.6 241 73.0
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.1e-88 330.5 242 72.7
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.1e-88 330.5 242 75.2
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.9e-88 329.7 238 81.5
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 3.2e-88 328.9 242 76.0
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 4.2e-88 328.6 227 83.7
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 4.2e-88 328.6 242 72.7
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 5.4e-88 328.2 241 80.1
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 9.3e-88 327.4 242 74.8
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.2e-87 327.0 240 79.2
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 2.1e-87 326.2 227 80.2
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 4.6e-87 325.1 241 70.1
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.3e-86 323.6 235 74.0
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 77.3
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.9e-85 319.7 238 79.8
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.9e-85 319.7 239 73.6
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.9e-85 319.7 200 80.5
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.9e-85 319.7 200 81.5
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.5e-85 319.3 241 77.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 5.6e-85 318.2 202 80.2
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.6e-84 316.6 196 81.1
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.8e-84 315.8 244 76.6
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 2.8e-84 315.8 241 76.3
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.8e-84 315.8 193 83.4
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 3.7e-84 315.5 238 76.1
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 3.7e-84 315.5 242 69.8
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 3.7e-84 315.5 238 76.9
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.7e-84 315.5 239 72.8
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 3.7e-84 315.5 200 79.0
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.4e-83 313.5 245 66.5
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 3.1e-83 312.4 197 79.2
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.0e-83 312.0 242 70.7
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.3e-83 311.6 239 71.5
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 9.0e-83 310.8 248 68.5
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 9.0e-83 310.8 237 71.7
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.5e-82 310.1 240 75.8
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.6e-82 309.3 238 66.0
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 3.4e-82 308.9 241 76.3
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.3e-81 307.0 238 73.5
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 1.3e-81 307.0 199 78.9
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.8e-81 305.4 242 72.7
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.9e-80 303.1 200 79.0
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.5e-80 302.8 200 79.0
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.5e-80 302.8 233 69.1
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 7.1e-80 301.2 240 68.3
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 7.1e-80 301.2 209 82.8
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 7.1e-80 301.2 238 66.0
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.1e-79 299.7 204 76.5
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 2.7e-79 299.3 204 74.5
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.3e-78 297.0 204 76.0
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.8e-78 296.6 228 72.8
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.3e-78 296.2 204 76.5
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.0e-78 295.8 238 65.5
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.0e-78 295.8 229 71.6
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.9e-78 295.4 238 65.1
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.5e-77 292.7 204 74.5
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.3e-77 292.4 238 66.0
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 4.3e-77 292.0 204 75.0
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.3e-76 290.4 242 69.4
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 3.7e-76 288.9 242 69.8
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 4.8e-76 288.5 204 74.0
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 4.8e-76 288.5 204 74.0
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 2.4e-75 286.2 204 73.5
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 2.4e-75 286.2 204 73.5
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 3.1e-75 285.8 183 77.6
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 3.4e-74 282.3 238 71.4
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 6.5e-73 278.1 203 70.9
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 7.1e-72 274.6 203 68.0
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 4.3e-69 265.4 178 73.6
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 7.4e-69 264.6 238 57.6
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 4.1e-67 258.8 227 59.9
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 4.5e-66 255.4 191 68.1
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 2.0e-61 240.0 151 80.8
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 5.7e-61 238.4 191 62.3
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 2.0e-58 229.9 205 63.4
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.7e-57 226.9 191 62.8
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.4e-56 223.8 243 53.5
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 2.2e-49 199.9 169 65.1
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.2e-47 194.1 133 75.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 8.2e-44 181.4 111 81.1
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 2.4e-43 179.9 105 86.7
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.0e-41 174.5 205 53.7
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 4.0e-38 162.5 174 49.4
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 3.1e-35 152.9 171 46.8
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 3.1e-27 126.3 182 39.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 3.1e-27 126.3 129 54.3
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-26 124.4 86 68.6
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 5.4e-19 99.0 182 34.1
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.5e-18 96.3 90 71.1
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 3.3e-16 89.7 89 56.2
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 2.8e-15 86.7 56 76.8
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.9e-12 76.6 179 30.2
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 3.3e-08 63.2 81 48.1
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 6.8e-06 55.5 82 43.9


User provided reference genes

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